KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:41 2014 Check: 00 .. Name: ENSP00000417085/1-729 Len: 994 Check: 6898 Weight: 1.00 Name: ENSBTAP00000001891/1-737 Len: 994 Check: 4773 Weight: 1.00 Name: ENSTTRP00000010923/1-726 Len: 994 Check: 8991 Weight: 1.00 Name: BACU006062/1-853 Len: 994 Check: 4635 Weight: 1.00 Name: bmy_16364T0/1-663 Len: 994 Check: 8399 Weight: 1.00 // 1 50 ENSP00000417085/1-729 ---------- ---------- MNPFQKN--- -------ESK ---------- ENSBTAP00000001891/1-737 ---------- ---REREEPA MNPFQKN--- -------DSK ---------- ENSTTRP00000010923/1-726 ---------- ---------- MNLFQTN--- -------EFK ---------- BACU006062/1-853 MMNGTAGPSH IDSRERVLKL GESFEKQPRC AFHTVRYDFK PASIDTSCEG bmy_16364T0/1-663 ---------- ---------- MNLFQKN--- -------EFK ---------- 51 100 ENSP00000417085/1-729 ---------- ---------- ---------- ETLFS----- ---------- ENSBTAP00000001891/1-737 ---------- ---------- ---------- ETLFL----- ---------- ENSTTRP00000010923/1-726 ---------- ---------- ---------- ETPFL----- ---------- BACU006062/1-853 ELEVGKGEQV TITLPNIEGS TTPVTVFKGS KKPYLKECIL IINHDTGECR bmy_16364T0/1-663 ---------- ---------- ---------- ETPFL----- ---------- 101 150 ENSP00000417085/1-729 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001891/1-737 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010923/1-726 ---------- ---------- ---------- ---------- ---------- BACU006062/1-853 LEKLSSNITV KKTRVEGSSK IQYRIEQQQQ QMRNSTRTPN LIKHSPSEDK bmy_16364T0/1-663 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000417085/1-729 --PVSIEE-- ---------- ---------- ---------- ---------- ENSBTAP00000001891/1-737 --PVSTEE-- ---------- ---------- ---------- ---------- ENSTTRP00000010923/1-726 --PVSPEE-- ---------- ---------- ---------- ---------- BACU006062/1-853 MSPASPMDDI ERELKAEASL MDQMSSCDSS SVSKSSSSSS SEDSSSDSED bmy_16364T0/1-663 --PVSPEE-- ---------- ---------- ---------- ---------- 201 250 ENSP00000417085/1-729 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001891/1-737 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010923/1-726 ---------- ---------- ---------- ---------- ---------- BACU006062/1-853 EECRSSPSDP GNYVSKHPTM STMPQCRIPE VVAGHNKHHD SNGLLKNTLK bmy_16364T0/1-663 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000417085/1-729 VPPRPPSPPK KPSPTICGSN YPLSIAFIVV NEFCERFSYY GMKAVLILYF ENSBTAP00000001891/1-737 VPPRPPSFPE KPSPKICGSN YPLSIVFIVV NEFCERFSYY GMKAVLTLYF ENSTTRP00000010923/1-726 VPPRPPSFPK KPSPKICGSN YPLSIVFIVV NEFCERFSYY GMKAVLTLYF BACU006062/1-853 VPPRPPSFPK KPSPKICGSN YPLSIVFIVV NEFCERFSYY GMKAVLTLYF bmy_16364T0/1-663 VPPRPXSFPK KPSPKICGSN YPLSIVFIVV NEFCERFSYY GMKAVLTLYF 301 350 ENSP00000417085/1-729 LYFLHWNEDT STSIYHAFSS LCYFTPILGA AIADSWLGKF KTIIYLSLVY ENSBTAP00000001891/1-737 LYFLHWSENT STSVYHAFSS LCYFTPILGA AIADSWLGKF KTIIYLSLVY ENSTTRP00000010923/1-726 LYFLHWSEDT STSVYHAFSS LCYFTPILGA AIADSWLGKF KTIIYLSLVY BACU006062/1-853 LYFLHWSEDT STSVYHAFSS LCYFTPILGA AIADSWLGKF KTIIYLSLVY bmy_16364T0/1-663 LYFLHWSEDT STSVYHAFSS LCYFTPILGA AIADSW---- -TIIYLSLVY 351 400 ENSP00000417085/1-729 VLGHVIKSLG ALPILGGQVV HTVLSLIGLS LIALGTGGIK PCVAAFGGDQ ENSBTAP00000001891/1-737 VLGHVIKSMG ALPILGGQML HTVLSMVGLS LIALGTGGIK PCVAAFGGDQ ENSTTRP00000010923/1-726 VLGHVIKSMG ALPILGGQML HTVLSMVGLS LIALGTGGIK PCVAAFGGDQ BACU006062/1-853 VLGHVIKSMG ALPILGGQML HTVLSMVGLS LIALGTGGIK PCVAAFGGDQ bmy_16364T0/1-663 VLGHVIKSMG ALPILGGQML HTVLSMVGLS LIALGTGGIK PCVAAFGGDQ 401 450 ENSP00000417085/1-729 FEEKHAEERT RYFSVFYLSI NAGSLISTFI TPMLR-GDVQ CFGEDCYALA ENSBTAP00000001891/1-737 FEEKHAEERT RYFSVFYLSI NAGSLISTFV TPMLRVGDVQ CFGKDCYALA ENSTTRP00000010923/1-726 FEEKHAEERT RYFSVFYLSI NAGSLISTFV TPMLR-GDVQ CFGKDCYALA BACU006062/1-853 FEEKHAEERT RYFSVFYLSI NAGSLISTFV TPMLR-GDVQ CFGKDCYALA bmy_16364T0/1-663 FEEKHAEERT RYFSVFYLSI NAGSLISTFV TPMLR----- ---------- 451 500 ENSP00000417085/1-729 FGVPGLLMVI ALVVFAMGSK IYNKPPPEGN IVAQVFKCIW FAISNRFKNR ENSBTAP00000001891/1-737 FGVPGLLMLI ALVVFAMGSK LYRKPPPEGN ILNQVVKCIW FAISSRFKNH ENSTTRP00000010923/1-726 FGVPGLLMVI ALVVFAMGSK IYRKPPPEGN IVTQVVKCIW FAISNRFKNR BACU006062/1-853 FGVPGLLMVI ALVVFAMGSK IYRKPPPEGN IVTQVVKCIW FAISNRFKNR bmy_16364T0/1-663 ---------- --VVFAMGSK IYRKPPPEGN IVTQVVKCIW FAISNRFKNR 501 550 ENSP00000417085/1-729 SGDIPKRQHW LDWAAEKYPK QLIMDVKALT RVLFLYIPLP MFWALLDQQG ENSBTAP00000001891/1-737 SGDNPKREHW LDWAAEKYPK QLIMDVKALT RVLFLYIPLP MFWALLDQQG ENSTTRP00000010923/1-726 SADIPKREHW LDWAAEKYPR QLIMDVKALT RVLFLYIPLP MFWALLDQQG BACU006062/1-853 SADIPKREHW LDWAAEKYP- ---------- ---------- ---------- bmy_16364T0/1-663 SADIPKREHW LDWAAEKYP- ---------- ---------- ---------G 551 600 ENSP00000417085/1-729 SRWTLQAIRM NRNLGFFVLQ PDQMQVLNPL LVLIFIPLFD FVIYRLVSKC ENSBTAP00000001891/1-737 SRWTLQATRM NGNLGFFVLQ PDQMQVLNPF LVLIFIPLFD LVIYRLVSKC ENSTTRP00000010923/1-726 SRWTLQATRM NGNLGFFVLQ PDQMQVLNPF LVLIFIPLFD FIIYPLVSKC BACU006062/1-853 ---------- ---------- -----VLNPF LVLIFIPLFD LVIYRLVSKC bmy_16364T0/1-663 SRWTLQATRM NGNLGFFVLQ PDQMQVLNPF LVLIFIPLFD LVIYRLVSKC 601 650 ENSP00000417085/1-729 GINFSSLRKM AVGMILACLA FAVAAAVEIK INEMAPAQPG PQEVFLQVLN ENSBTAP00000001891/1-737 GINFTSLRKM AVGMILACLA FAVAAAVEIK INEMAPHQPD SQEIFLQVLN ENSTTRP00000010923/1-726 GINFTSLRKM AVGMILACLA FAVAATVEIK INEMAPPQPD SQEIFLQVLN BACU006062/1-853 GINFTSLRKM AVGMILACLA FAVAATVEIK INEMAPPQPD SQEIFLQVLN bmy_16364T0/1-663 GINFTSLRKM A--------- ---------- --EMAPPQPD SQEIFLQVLN 651 700 ENSP00000417085/1-729 LADDEVKVTV VGNENNSLLI ESIKSFQKTP HYSKLHLKTK SQDFHFHLKY ENSBTAP00000001891/1-737 LADDEVKVTV LGDENNTLLA ESIKSFQNMP HYSKLHLKTK SQNFHFQLKY ENSTTRP00000010923/1-726 LADNEVKVTV LGDENNSLLA ESIKSFQKMP HYSKLHLKTK SQNFHFQLKY BACU006062/1-853 LADNEVEVTV LGDENNSLLA ESIKSFQKMP HYSRLHLKTK SQNFHFQLKY bmy_16364T0/1-663 LADNEVEVTV LGDENNSLLA ESIKSFQKMP HYSKLHLKTK SQNFHFQLKY 701 750 ENSP00000417085/1-729 HNLSLYTEHS VQEKNWYSLV IREDGNSISS MMVKDTESRT TNGMTTVRF- ENSBTAP00000001891/1-737 HNVSVYTDHS VEEKIWYTLI IREDGESISS MMVKDEENKT TNGMTAMRF- ENSTTRP00000010923/1-726 HNLSVYTEHS VEEKKWYTLI IREDGKSISS MMVKDEENKT TNGMTAMRF- BACU006062/1-853 HNLSVYTEHS VEEKKWYTLI IREDGKSISS MMVKDEENKT TNGMTTMRF- bmy_16364T0/1-663 HNLSVYTEHS VEEKKWYTLI IREDGKSISS MMVKDEENKT TNGMTAMRFG 751 800 ENSP00000417085/1-729 ---------- --VNTL---- --HKDVN--- ---------- ---ISLSTDT ENSBTAP00000001891/1-737 ---------- --VNTL---- --HEKVN--- ---------- ---VSLGTDA ENSTTRP00000010923/1-726 ---------- --VNTL---- --HEEIN--- ---------- ---ISLGTDT BACU006062/1-853 ---------- --VNTL---- --HEEIN--- ---------- ---ISLGTDS bmy_16364T0/1-663 CQGDPGLSVL LNLGSLLICG ASHKETSHST CLGGTVIIIC FCICSFRKNS 801 850 ENSP00000417085/1-729 SLNVGEDYGV SAYRTVQRGE YPAVHCRTED KNFSLNLGLL DFGAAYLFVI ENSBTAP00000001891/1-737 SLIVDEDYGV SAYRTVQRGE YPAVHCRTKK EDFSLNLGLL DFGAVYLFVI ENSTTRP00000010923/1-726 SLSVEEDYGV SAYRTVQRGE YSAVPCRTKN EEFSLNLGLL DFGAAYLFVI BACU006062/1-853 SLHVEEDYSV SAYRSVRRGE YPAVPCRTKN EDFSLNLGLL DFGAAYLFVI bmy_16364T0/1-663 SLGVEEDYGV SAYRTVQRGE YPAVPCRTKN EDFSLNLGLL DFGAAYLFVI 851 900 ENSP00000417085/1-729 TNNTNQGLQA WKIEDIPANK MSIAWQLPQY ALVTAGEVMF SVTGLEFSYS ENSBTAP00000001891/1-737 TNRTNQGPQA WKMEYMPANK MSIAWQLPQY ALVTAGEVMF SVTGLEFSYS ENSTTRP00000010923/1-726 TNSTSQGPQA WKMEYIPANK MSIAWQLPQY ALVTAGEVMF SVTGLEFSYS BACU006062/1-853 TN-------- ---------- ---------- ---------- ---------- bmy_16364T0/1-663 TNSTSQGPQA WKMEYIPANK MSIAWQLPQY AL-------- ---------- 901 950 ENSP00000417085/1-729 QAPSSMKSVL QAAWLLTIAV GNIIVLVVAQ FSGLVQWAEF ILFSCLLLVI ENSBTAP00000001891/1-737 QAPSSMKSVL QAAWLLTVAV GNIIVLIVAQ FSGLAQWAEF ILFSCLLLVV ENSTTRP00000010923/1-726 QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXWAEF ILFS--LLVV BACU006062/1-853 -APSSMKSVL QAAWLLTVAV GNIIVLIVAQ FSSLVQWAEF ILFSCLLLVV bmy_16364T0/1-663 -APSSMKSVL QAAWLLTVAV GNIIVLIVAQ FSSLVQWAEF ILFSCLLLVV 951 1000 ENSP00000417085/1-729 CLIFSIMGYY YVPVKTEDMR GPADKHIPHI QGNMIKLETK KTKL ENSBTAP00000001891/1-737 CLIFSIMGYY YVPLKPGDVQ GSADKQTPQI QGNMINLETK KTKF ENSTTRP00000010923/1-726 CI-FSIMGHY YVPIKLEDIQ GSADKQIPQI QGNMINLETK KTKL BACU006062/1-853 CLIFSIMGHY YVPIKPEDIQ GSADKQIPKI QGNMINLETK KTKL bmy_16364T0/1-663 CLIFSIMGHY YVPIKPEDIQ GSADKQIPKI QGNMINLETK KTKL