KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:44 2014 Check: 00 .. Name: ENSTTRP00000006739/1-1312 Len: 1331 Check: 9277 Weight: 1.00 Name: ENSBTAP00000001917/1-1327 Len: 1331 Check: 4432 Weight: 1.00 Name: ENSP00000311579/1-1327 Len: 1331 Check: 4626 Weight: 1.00 Name: BACU005212/1-1007 Len: 1331 Check: 4201 Weight: 1.00 Name: bmy_09227T0/1-748 Len: 1331 Check: 1113 Weight: 1.00 // 1 50 ENSTTRP00000006739/1-1312 MAASRRSQHH HHHHQQQLQP APGASAPPPP PPPPLSPGLA PGTTPASPTV ENSBTAP00000001917/1-1327 MAASRRSQHH HHHHQQQLQP APGASAPPPP PPLPLSPGLA PGTTPASPTV ENSP00000311579/1-1327 MAASRRSQHH HHHHQQQLQP APGASAPPPP PPPPLSPGLA PGTTPASPTA BACU005212/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006739/1-1312 GGLAPFASPR HGLALPEGDG SRDPPDRPRS PDPVDSTSCC STTSTVCTVA ENSBTAP00000001917/1-1327 GGLAPFASPR HGLALPEGDG SRDPPDRPRS PDPVDSASCC SPTSTICTVA ENSP00000311579/1-1327 SGLAPFASPR HGLALPEGDG SRDPPDRPRS PDPVDGTSCC STTSTICTVA BACU005212/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006739/1-1312 AP--VPALPA SSAVGVAPSP AGGGSNNSPX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001917/1-1327 AAPVVPAVSA SSAVGVAPNP AGGGSNNSPS SSSSPTSSSS SSPSSPGSSL ENSP00000311579/1-1327 AAPVVPAVST SSAAGVAPNP AGSGSNNSPS SSSSPTSSSS SSPSSPGSSL BACU005212/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006739/1-1312 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001917/1-1327 AESPEAAGVS TTAPLGPGAA GPGPGVPAVS GALRELLEAC RNGDVSRVKR ENSP00000311579/1-1327 AESPEAAGVS STAPLGPGAA GPGTGVPAVS GALRELLEAC RNGDVSRVKR BACU005212/1-1007 ---------- ---------- ---------- ------MIFC NHL------- bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000006739/1-1312 XXXAANVNAK DMAGRKSSPL HFAAGFGRKD VVEHLLQMGA NVHARDDGGL ENSBTAP00000001917/1-1327 LVDAANVNAK DMAGRKSSPL HFAAGFGRKD VVEHLLQMGA NVHARDDGGL ENSP00000311579/1-1327 LVDAANVNAK DMAGRKSSPL HFAAGFGRKD VVEHLLQMGA NVHARDDGGL BACU005212/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000006739/1-1312 IPLHNACSFG HAEVVSLLLC QGADPNARDN WNYTPLHEAA IKGKIDVCIV ENSBTAP00000001917/1-1327 IPLHNACSFG HAEVVSLLLC QGADPNARDN WNYTPLHEAA IKGKIDVCIV ENSP00000311579/1-1327 IPLHNACSFG HAEVVSLLLC QGADPNARDN WNYTPLHEAA IKGKIDVCIV BACU005212/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000006739/1-1312 LLQHGADPNI RNTDGKSALD LADPSAKAVL TGEYKKDELL EAARSGNEEK ENSBTAP00000001917/1-1327 LLQHGADPNI RNTDGKSALD LADPSAKAVL TGEYKKDELL EAARSGNEEK ENSP00000311579/1-1327 LLQHGADPNI RNTDGKSALD LADPSAKAVL TGEYKKDELL EAARSGNEEK BACU005212/1-1007 ---------- ---------- ---------- -GEYKKDELL EAARSGNEEK bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000006739/1-1312 LMALLTPLNV NCHASDGRKS TPLHLAAGYN RVRIVQLLLQ HGADVHAKDK ENSBTAP00000001917/1-1327 LMALLTPLNV NCHASDGRKS TPLHLAAGYN RVRIVQLLLQ HGADVHAKDK ENSP00000311579/1-1327 LMALLTPLNV NCHASDGRKS TPLHLAAGYN RVRIVQLLLQ HGADVHAKDK BACU005212/1-1007 LMALLTPLNV NCHASDGRKS TPLHLAAGYN RVRIVQLLLQ HGADVHAKDK bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000006739/1-1312 GGLVPLHNAC SYGHYEVTEL LLKHGACVNA MDLWQFTPLH EAASKNRVEV ENSBTAP00000001917/1-1327 GGLVPLHNAC SYGHYEVTEL LLKHGACVNA MDLWQFTPLH EAASKNRVEV ENSP00000311579/1-1327 GGLVPLHNAC SYGHYEVTEL LLKHGACVNA MDLWQFTPLH EAASKNRVEV BACU005212/1-1007 GGLVPLHNAC SYGHYEVTEL LLKHGACVNA MDLWQFTPLH EAASKNRVEV bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000006739/1-1312 CSLLLSHGAD PTLVNCHGKS AVDMAPTPEL RERLTYEFKG HSLLQAAREA ENSBTAP00000001917/1-1327 CSLLLSHGAD PTLVNCHGKS AVDMAPTPEL RERLTYEFKG HSLLQAAREA ENSP00000311579/1-1327 CSLLLSHGAD PTLVNCHGKS AVDMAPTPEL RERLTYEFKG HSLLQAAREA BACU005212/1-1007 CSLLLSHGAD PTLVNCHGKS AVDMAPTPEL RERLTYEFKG HSLLQAAREA bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000006739/1-1312 DLAKVKKTLA LEIINFKQPQ SHETALHCAV ASLHPKRKQV TELLLRKGAN ENSBTAP00000001917/1-1327 DLAKVKKTLA LEIINFKQPQ SHETALHCAV ASLHPKRKQV TELLLRKGAN ENSP00000311579/1-1327 DLAKVKKTLA LEIINFKQPQ SHETALHCAV ASLHPKRKQV TELLLRKGAN BACU005212/1-1007 DLAKVKKTLA LEIINFKQPQ SHETALHCAV ASLHPKRKQV TELLLRKGAN bmy_09227T0/1-748 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000006739/1-1312 VNEKNKDFMT PLHVAAERAH NDVMEVLHKH GAKMNALDTL GQTALHRAAL ENSBTAP00000001917/1-1327 VNEKNKDFMT PLHVAAERAH NDVMEVLHKH GAKMNALDTL GQTALHRAAL ENSP00000311579/1-1327 VNEKNKDFMT PLHVAAERAH NDVMEVLHKH GAKMNALDTL GQTALHRAAL BACU005212/1-1007 VNEKNKDFMT PLHVAAERAH NDVMEVLHKH GAKMNALDTL GQTALHRAAL bmy_09227T0/1-748 ---------- ---------- ---------- ---MNALDTL GQTALHRAAL 601 650 ENSTTRP00000006739/1-1312 AGHLQTCRLL LSYGSDPSII SLQGFTAAQM GNEAVQQILS E--------F ENSBTAP00000001917/1-1327 AGHLQTCRLL LSYGSDPSII SLQGFTAAQM GNEAVQQILS ESTPIRTSDV ENSP00000311579/1-1327 AGHLQTCRLL LSYGSDPSII SLQGFTAAQM GNEAVQQILS ESTPIRTSDV BACU005212/1-1007 AGHLQTCRLL LSYGSDPSII SLQGFTAAQM GNEAVQQILS ESTPIRTSDV bmy_09227T0/1-748 AGHLQTCRLL LSYGSDPSII SLQGFTAAQM GNEAVQQILS ESTPIRTSDV 651 700 ENSTTRP00000006739/1-1312 DHKI-----K TELGTVKQLC SPQNVNCRDL EGRHSTPLHF AAGYNRVSVV ENSBTAP00000001917/1-1327 DYRLLEASKA GDLETVKQLC SPQNVNCRDL EGRHSTPLHF AAGYNRVSVV ENSP00000311579/1-1327 DYRLLEASKA GDLETVKQLC SSQNVNCRDL EGRHSTPLHF AAGYNRVSVV BACU005212/1-1007 DYRLLEASKA GDLETVKQLC SPQNVNCRDL EGRHSTPLHF AAGYNRVSVV bmy_09227T0/1-748 DYRLLEASKA GDLETVKQLC SPQNVNCRDL EGRHSTPLHF AAGYNRVSVV 701 750 ENSTTRP00000006739/1-1312 EYLLHHGADV HAKDKGGLVP LHNACSYGHY EVAELLVRHG ASVNVADLWK ENSBTAP00000001917/1-1327 EYLLHHGADV HAKDKGGLVP LHNACSYGHY EVAELLVRHG ASVNVADLWK ENSP00000311579/1-1327 EYLLHHGADV HAKDKGGLVP LHNACSYGHY EVAELLVRHG ASVNVADLWK BACU005212/1-1007 EYLLHHGADV HAKDKGGLVP LHNACSYGHY EVAELLVRHG ASVNVADLWK bmy_09227T0/1-748 EYLLHHGADV HAKDKGGLVP LHNACSYGHY EVAELLVRHG ASVNVADLWK 751 800 ENSTTRP00000006739/1-1312 FTPLHEAAAK GKYEICKLLL KHGADPTKKN RDGNTPLDLV KEGDTDIQDL ENSBTAP00000001917/1-1327 FTPLHEAAAK GKYEICKLLL KHGADPTKKN RDGNTPLDLV KEGDTDIQDL ENSP00000311579/1-1327 FTPLHEAAAK GKYEICKLLL KHGADPTKKN RDGNTPLDLV KEGDTDIQDL BACU005212/1-1007 FTPLHEAAAK GKYEISKLLL KHGADPTKKN RDGNTPLDLV KEGDTDIQDL bmy_09227T0/1-748 FTPLHEAAAK GKYEICKLLL KHGADPTKKN RDGNTPLDLV KEGDTDIQDL 801 850 ENSTTRP00000006739/1-1312 LRGDAALLDA AKKGCLARVQ KLCTPENINC RDTQGRNSTP LHLAAGYNNL ENSBTAP00000001917/1-1327 LRGDAALLDA AKKGCLARVQ KLCTPENINC RDTQGRNSTP LHLAAGYNNL ENSP00000311579/1-1327 LRGDAALLDA AKKGCLARVQ KLCTPENINC RDTQGRNSTP LHLAAGYNNL BACU005212/1-1007 LRGDAALLDA AKKGCLARVQ KLCTPENINC RDTQGRNSTP LHLAAGYNNL bmy_09227T0/1-748 LRGDAALLDA AKKGCLARVQ KLCTPENINC RDTQGRNSTP LHLAAGYNNL 851 900 ENSTTRP00000006739/1-1312 EVAEYLLEHG ADVNAQDKGG LIPLHNAASY GHVDIAALLI KYNTCVNATD ENSBTAP00000001917/1-1327 EVAEYLLEHG ADVNAQDKGG LIPLHNAASY GHVDIAALLI KYNTCVNATD ENSP00000311579/1-1327 EVAEYLLEHG ADVNAQDKGG LIPLHNAASY GHVDIAALLI KYNTCVNATD BACU005212/1-1007 EVAEYLLEHG ADVNAQDKGG LIPLHNAASY GHVDIAALLI KYNTCVNATD bmy_09227T0/1-748 EVAEYLLEHG ADVNAQDKGG LIPLHNAASY GHVDIAALLI KYNTCVNATD 901 950 ENSTTRP00000006739/1-1312 KWAFTPLHEA AQKGRTQLCA LLLAHGADPT MKNQEGQTPL DLATADDIRA ENSBTAP00000001917/1-1327 KWAFTPLHEA AQKGRTQLCA LLLAHGADPT MKNQEGQTPL DLATADDIRA ENSP00000311579/1-1327 KWAFTPLHEA AQKGRTQLCA LLLAHGADPT MKNQEGQTPL DLATADDIRA BACU005212/1-1007 KWAFTPLHEA AQKGRTQLCA LLLAHGADPT MKNQEGQTPL DLATADDIRA bmy_09227T0/1-748 KWAFTPLHEA AQKGRTQLCA LLLAHGADPT MKNQEGQTPL DLATADDIRA 951 1000 ENSTTRP00000006739/1-1312 LLIDAMPPEA LPTCFKPQAT VVSASLISPA STPSCLSAAS SIDNLAGPLA ENSBTAP00000001917/1-1327 LLIDAMPPEA LPTCFKPQAT VVSASLISPA STPSCLSAAS SIDNLTGPLA ENSP00000311579/1-1327 LLIDAMPPEA LPTCFKPQAT VVSASLISPA STPSCLSAAS SIDNLTGPLA BACU005212/1-1007 LLIDAMPPEA SPTCFKPQAT VVSASLISPA STPSCLSAAS SIDNLTGPLA bmy_09227T0/1-748 LLIDAMPPEA LPTCFKPQAT VVSASLISPA STPSCLSAAS SIDNLTGPLA 1001 1050 ENSTTRP00000006739/1-1312 ELAVGGASNA GDGAAGTERK EGE----VAG LDMNISQFLK SLGLEHLRDI ENSBTAP00000001917/1-1327 ELAVGGASNT GDGAAGAERK EGE----VAG LDMNISQFLK SLGLEHLRDI ENSP00000311579/1-1327 ELAVGGASNA GDGAAGTERK EGE----VAG LDMNISQFLK SLGLEHLRDI BACU005212/1-1007 ELAVGGASNA GDGAAGAERK EGEGKYTFAG LDMNISQFLK SLGLEHLRDI bmy_09227T0/1-748 ELAVGGASNA GDGAAGAERK EGEGKYTFAG LDMNISQFLK SLGLEHLRDI 1051 1100 ENSTTRP00000006739/1-1312 FETEQITLDV LADMGHEELK EIGINAYGHR HKLIKGVERL LGGQQGTNPY ENSBTAP00000001917/1-1327 FETEQITLDV LADMGHEELK EIGINAYGHR HKLIKGVERL LGGQQGTNPY ENSP00000311579/1-1327 FETEQITLDV LADMGHEELK EIGINAYGHR HKLIKGVERL LGGQQGTNPY BACU005212/1-1007 FETEQITLDV LADMGHEELK EIGINAYGHR HKLIKGVERL LGGQQGTNPY bmy_09227T0/1-748 FETEQITLDV LADMGHEELK EIGINAYGHR HKLIKGVERL LGGQQGTNPY 1101 1150 ENSTTRP00000006739/1-1312 LTFHCVNQGT ILLDLAPEDK EYQSVEEEMQ STIREHRDGG NAGGIFNRYN ENSBTAP00000001917/1-1327 LTFHCVNQGT ILLDLAPEDK EYQSVEEEMQ STIREHRDGG NAGGVFNRYN ENSP00000311579/1-1327 LTFHCVNQGT ILLDLAPEDK EYQSVEEEMQ STIREHRDGG NAGGIFNRYN BACU005212/1-1007 LTFHCVNQGT ILLDLAPEDK EYQSVEEEMQ STIREHRDGG NAGGVFNRYN bmy_09227T0/1-748 LTFHCVNQGT ILLDLAPEDK EYQSVEEEMQ STIREHRDGG NAGGIFNRYN 1151 1200 ENSTTRP00000006739/1-1312 VIRXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS PFINAIIHKG ENSBTAP00000001917/1-1327 VIRIQKVVNK KLRERFCHRQ KEVSEENHNH HNERMLFHGS PFINAIIHKG ENSP00000311579/1-1327 VIRIQKVVNK KLRERFCHRQ KEVSEENHNH HNERMLFHGS PFINAIIHKG BACU005212/1-1007 VIRIQKVVNK KLRERFCHRQ KEVSEENHNH HNERMLFHGS PFINAIIHKG bmy_09227T0/1-748 VIRIQKVVNK KLRERFCHRQ KEVSEENHNH HNERMLFHGS PFINAIIHKG 1201 1250 ENSTTRP00000006739/1-1312 FDERHAYIGG MFGAGIYFAE NSSKSNQYVY GIGGGTGCPT HKDRSCYICH ENSBTAP00000001917/1-1327 FDERHAYIGG MFGAGIYFAE NSSKSNQYVY GIGGGTGCPT HKDRSCYICH ENSP00000311579/1-1327 FDERHAYIGG MFGAGIYFAE NSSKSNQYVY GIGGGTGCPT HKDRSCYICH BACU005212/1-1007 FDERHAYIGG MFGAGIYFAE NSSKSNQYVY GIGGGTGCPA HKDRSCYVCH bmy_09227T0/1-748 FDERHAYIGG MFGAGIYFAE NSSKSNQYVY GIGGGTGCPA HKDRSCYICH 1251 1300 ENSTTRP00000006739/1-1312 RQMLFCRVTL GKSFLQFSTM KMAHAPPGHH SVIGRPSVNG LAYAEYVIYR ENSBTAP00000001917/1-1327 RQMLFCRVTL GKSFLQFSTM KMAHAPPGHH SVIGRPSVNG LAYAEYVIYR ENSP00000311579/1-1327 RQMLFCRVTL GKSFLQFSTM KMAHAPPGHH SVIGRPSVNG LAYAEYVIYR BACU005212/1-1007 RQMLFCRVTL GKSFLQFSTM KMAHAPPGHH SVIGRPSVNG LAYAEYVIYR bmy_09227T0/1-748 RQMLFCRVTL GKSFLQFSTM KMAHAPPGHH SVIGRPSVNG LAYAEYVIYR 1301 1350 ENSTTRP00000006739/1-1312 GEQAYPEYLI TYQIMKPEAP SQTTAAAEQK T ENSBTAP00000001917/1-1327 GEQAYPEYLI TYQIMKPEAP SQTATAAEQK T ENSP00000311579/1-1327 GEQAYPEYLI TYQIMKPEAP SQTATAAEQK T BACU005212/1-1007 GEQAYPEYLI TYQIMKPEAP SQTAAAAEQK T bmy_09227T0/1-748 GEQAYPEYLI TYQIMKPEAP SQTAAAAEQK T