KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:45 2014 Check: 00 .. Name: ENSP00000417261/1-814 Len: 817 Check: 6506 Weight: 1.00 Name: ENSBTAP00000001918/1-808 Len: 817 Check: 9959 Weight: 1.00 Name: ENSTTRP00000015788/1-812 Len: 817 Check: 7690 Weight: 1.00 Name: bmy_11751T0/1-718 Len: 817 Check: 4160 Weight: 1.00 Name: BACU009296/1-738 Len: 817 Check: 2432 Weight: 1.00 // 1 50 ENSP00000417261/1-814 MEPEINCSEL CDSFPGQELD RRPLHDLCKT TITSSHHSSK TISSLSPVLL ENSBTAP00000001918/1-808 MEPEINCSEL CDGFSGQELE RRPLHDLCRT TITSSHHSSK TISSLSPALL ENSTTRP00000015788/1-812 MESEISCSEL CDGFPGQELE RRPLHDLCRT TITSSHHSSK TISSLSPALL bmy_11751T0/1-718 ---------- ---------- ---------- ---------- ---------- BACU009296/1-738 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000417261/1-814 GIVWTFLSCG LLLILFFLAF TIHCRKNRIV KMSSPNLNIV TLLGSCLTYS ENSBTAP00000001918/1-808 GIVWTFLSCG LLLIAFFLGF TIRCRKNRIV KMSSPNLNIV TLLGSCLTYS ENSTTRP00000015788/1-812 GVVWTFLSCG ILLIAFFLGF TIRCRKNRIV KMSSPNLNIV TLLGSCLTYS bmy_11751T0/1-718 ---------- ---------- ---------- ---------- ------MTYS BACU009296/1-738 ---------- ---------- -------RIV KMSSPNLNIV TLLGSCMTYS 101 150 ENSP00000417261/1-814 SAYLFGI--Q DVLVGSSMET LIQTRLSMLC IGTSLVFGPI LGKSWRLYKV ENSBTAP00000001918/1-808 SAYLFGIHNQ GALVGSSMES LIQIRLSMLC IGTSLVFGPI LGKSWRLYKV ENSTTRP00000015788/1-812 SAYLFGIHHQ GALAGRSMET LIQVRLSMLC IGTSLVFGPI LGKSWRLYKV bmy_11751T0/1-718 SAYLFGIHHQ GALAGSSMET LIQVRLSMLC IGTSLVFGPI LGKSWRLYKV BACU009296/1-738 SAYLFGIHHQ GALAGSSMET LIQVRLSMLC IGTSLVFGPI LGKSWRLYKV 151 200 ENSP00000417261/1-814 FTQRVPDKRV IIKDLQLLGL VAALLMADVI LLMTWVLTDP IQCLQILSVS ENSBTAP00000001918/1-808 FTQRVPDKRV IIKDLQLLGL VAALVIADVI LLMTWVLTDP IQCLQILGVS ENSTTRP00000015788/1-812 FTQRVPDKRV IIKDLQLLGL VAALVVADVI LLMTWVLTDP IRCLQILSVS bmy_11751T0/1-718 FTQRVPDKRV IIKDLQLLGL VAALVIADVI LLMTWVLTDP IQCLQILSVS BACU009296/1-738 FTQRVPDKRV IIKDLQLLGL VAALVIADVI LLVTWVLTDP IQCLQILSVS 201 250 ENSP00000417261/1-814 MTVTGKDVSC TSTSTHFCAS RYSDVWIALI WGCKGLLLLY GAYLAGLTGH ENSBTAP00000001918/1-808 MTVTGRDVSC SLTSTHFCAS RYSDVWIALI LGCKGLLLLY GAYLAGLTDH ENSTTRP00000015788/1-812 MTVTGRDVSC SLTSTHFCAS RYPDVWIALV LGCKXXXXXX XXXXXXXTDH bmy_11751T0/1-718 MTVTGRDVSC SLTSTHFCAS RYSDVWIALV LGCKGLLLLY GAYLAGLTDH BACU009296/1-738 MTVTGRDVSC SLTSTHFCAS RYSDVWIALV LGCKGLLLLY GAYLAGLTDH 251 300 ENSP00000417261/1-814 VSSPPVNQSL TIMVGVNLLV LAAGLLFVVT RYLHSWPNLV FGLTSGGIFV ENSBTAP00000001918/1-808 VSSPPVNQSL TIMVGVNLVV LAAGLLFVVT RYLYSWPNLV FGLTSGGIFV ENSTTRP00000015788/1-812 VSSPPVNQSL TIMVGVNR-V LAAG--FVVT RYLHSWPNLV YGLTSGSIFV bmy_11751T0/1-718 VSSPPVNQSL TIMVGVNLVV LAAGLLFVVT RYLHSWPNLV FGLTSGGIFV BACU009296/1-738 VSSPPVNQSL TIMVGVNLVV LAAGLLFVVT RYLHSWPNLV FGLTSGGIFV 301 350 ENSP00000417261/1-814 CTTTINCFIF IPQLKQWKAF EEENQTIRRM AKYFSTPNKS FHTQYGEEEN ENSBTAP00000001918/1-808 CTTTINCFIF IPQLKQWKAF EEENQTIRRM AKYFSTPSKS LHTQYGEEQN ENSTTRP00000015788/1-812 CTTTINCFIF IPQLKQWKAF EEENQTVRRM AKYFSTPSKS LHTQYGEEQS bmy_11751T0/1-718 CTTTINCFVF IPQLKQWKAF EEENQTIRRM AKYFSTPSKS LHTQYGEEQS BACU009296/1-738 CTTTINCFIF IPQLKQWKAF EEENQTIRRM AKYFSTPSKS LHTHYGEEQS 351 400 ENSP00000417261/1-814 CHPRGEKSSM ERLLTEKNAV IESLQEQVNN AKEKIVRLMS AECTYDLPEG ENSBTAP00000001918/1-808 CHIRGEKNSM ERLLTEKNAV IESLQEQVNN AREKLVRLMS AGCSSDLPEE ENSTTRP00000015788/1-812 CHVRGEKNSM ERLLTEKNAV IESLQEQVNN AKEKLVRLMS AECTYDPPEG bmy_11751T0/1-718 CHVRGEKNSM ERLLTEKNAV IESLQEQVNN AKEKLVRLMS AECTYDPPEG BACU009296/1-738 CHVRGEKNSM ERLLTEKNAV IESLQEQVNN AKEKLVRLMS AECTYDPPEG 401 450 ENSP00000417261/1-814 AAPPASSPNK DVQAVASVHT LAAAQGPSGH LSDFQNDPGM AARDSQCTSG ENSBTAP00000001918/1-808 AVPPASSHHK DILATASAHS L-APQGPSEC LSDSQNDTSA ATQDSQSTSV ENSTTRP00000015788/1-812 AIPPASSHSK DILAAAPPHS L-AAQGSLKC LPDSLSDTTP ATQDSQSTSA bmy_11751T0/1-718 AVPPASSHSK DILAAAPPHS L-AAQGSLKC LSDSLNDTSP ATQDSQSTSA BACU009296/1-738 AVPPASSHSK DILAAAPPHS R-AAQGSLKC PSDSLNDTSP ATQDSQSTSA 451 500 ENSP00000417261/1-814 PSSYAQSLEG PGKDSSFSPG KEEKISDSKD FSDHLDSGCS QKPWTEQSLG ENSBTAP00000001918/1-808 LASSVQGLRG PVKDTSPSTG QKKKISDLKD LSNPLHLGCS QKPWAEQSQT ENSTTRP00000015788/1-812 PASGVQGVKG PVEDTSPSPG QKEKIAASQD FSDHLNLGCS QKPRAEQSQG bmy_11751T0/1-718 PASSVQGLKG PVXDTSPSPG QKEKISASQD FSDHLNLGCS QKPRAEQSRG BACU009296/1-738 PASSVQGLKG PVKDTSPSPG QKEKISASQD FSDHLNLGCS QKPRAEQSQG 501 550 ENSP00000417261/1-814 PERGDQVPMN PSQSLLPERG GSDPQRQRHL ENSEEPPERR -SRVSSVIRE ENSBTAP00000001918/1-808 AERRDQVPMA LHQCLMQSEE GSVPQRHGQV ENSEGSPEQL GSRVNSVIRE ENSTTRP00000015788/1-812 VERRDQVPMA LQQGLTPGGE GSVPQRQGQL ENSEGPQARP -SRVNSVIRE bmy_11751T0/1-718 AERRDQVPMA LQQGLMPGGE GSVPQRQGQL ENSEGPQARL -SRVNSVIRE BACU009296/1-738 AERRDQVPMA LQQGLMPGGE GSVPQRQGQL ENSEGPQVRL -SRVNSVIRE 551 600 ENSP00000417261/1-814 KLQEVLQDLG LGPEASLSTA PSCHQQTWKN SAAFSPQKMP LSKELGFSPY ENSBTAP00000001918/1-808 KLQEVLQDLG LGPRAPLPSS LSCPQQPWKS ITAHSPQKVP LSKEPGFSPS ENSTTRP00000015788/1-812 KLQEVLQDLG LGPEAPVPRP PSCPQQPWKS SACCSPQKMP LSKELGFSPY bmy_11751T0/1-718 KLQEVLQDLG LGPEAPVPSP PSCPQQPWKS SACRSPQKMP LSKELGFSPY BACU009296/1-738 KLQEVLQDLG LGPEAPVPSP PSCPQQPWKS SACRSPQKMP LSKELGFSPY 601 650 ENSP00000417261/1-814 MVRRRRAAQR ARSHFPGSAP SSVGHRANRT VPGAHSRLHV QNGDSPSLAP ENSBTAP00000001918/1-808 MVRRRRAAQR ARSHFLGAVP SYVGHRVNRA ISG----QNV Q--DSPCLDP ENSTTRP00000015788/1-812 MVRRRGVAQR ARSHLPGSVP CSVGRRVNRA DSGARTGRNV QDRDSPCLDP bmy_11751T0/1-718 MVRRRGAAQR ARSHLPGSVP SSVGRRVNRA DSGARTGRNV QDRDSPCLDP BACU009296/1-738 MVRRRGAAQR ARSHLPGSVP SSVGRRVNRA DSGAHTGRNV QDRDSPCLDP 651 700 ENSP00000417261/1-814 QTTDSRVRRP SSRKPSLPSD PQDRPGTLEG SKQSQTEPEG ARGSKAAFLR ENSBTAP00000001918/1-808 QTADPRVARP SSGNPLVLPA PQGKPGALEG HTQRQAEPRG AERSLESFPQ ENSTTRP00000015788/1-812 QTADSRVARP SSRKPLLLPA PQGKADSPEG SKQCQTEPQG AEGSRAALSH bmy_11751T0/1-718 QTADSRVARP SSGKPLLLPA PQGKPDALEG SKQCQTEPQR AEGSRAALSH BACU009296/1-738 QTADSRVARP SSGKPLLLPA PQGKPDALEG SKRCQTESQR AEGSRTALSH 701 750 ENSP00000417261/1-814 QPSGSGRAPS PAAPCLSKAS PDLPEQWQLW PPVPSGCASL SSQHSYFDTE ENSBTAP00000001918/1-808 KSSGSGRKLC PAAPRPSRAS PDLPGQRQ-- PPGSPGCPSL SSPSSYLDTE ENSTTRP00000015788/1-812 QPSGPGQALC PAAPRRARAS PDLPEQRLQR SPVPPGCPSL SPPHSYLDTE bmy_11751T0/1-718 QPSGPGRALC PTAPRRARAS PDLPEQRLQR SPAPTGCPSL SPPRSYLDTE BACU009296/1-738 QPSGPGGALC PAAPRRARAS PDLPEQRLQR SPAPPGCPAL SPPRSYLDTE 751 800 ENSP00000417261/1-814 SSSSDEFFCR CHRPYCEICF QSSSDSSDSG TSDTDPEPTG GLASWEKLWA ENSBTAP00000001918/1-808 SSSSDELFCP CHRPYCEICF QSSSDSSDSG SSDTDPEPAG ALASWEKLWA ENSTTRP00000015788/1-812 SSSSDEFFCR CHRPYCEICF QSSSDSSDSG SSDSDPEPAG RLASWEKLWA bmy_11751T0/1-718 SSSSDE-FCR CHRPCCEICF QSSSDSSDSG SSDSDPEPTG RLASWEKLWA BACU009296/1-738 SSSSDEFFCR CHRPYCEICF QSSSDSSDSG SSDSDPEPAG RLASWEKLWA 801 850 ENSP00000417261/1-814 RSKPIVNFKD DLKPTLV ENSBTAP00000001918/1-808 RSKPIVNFKD DLKPTLV ENSTTRP00000015788/1-812 RSKPVVNFKD DLKPTLV bmy_11751T0/1-718 RSKPIVNFKD DLKPTLV BACU009296/1-738 RSKPIVNFKD DLKPTLV