KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:46 2014 Check: 00 .. Name: ENSTTRP00000014070/1-544 Len: 1335 Check: 7809 Weight: 1.00 Name: ENSP00000322885/1-622 Len: 1335 Check: 9534 Weight: 1.00 Name: ENSBTAP00000001923/1-572 Len: 1335 Check: 3034 Weight: 1.00 Name: BACU012041/1-972 Len: 1335 Check: 4961 Weight: 1.00 Name: bmy_17490T0/1-885 Len: 1335 Check: 6568 Weight: 1.00 // 1 50 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 MGSSYRLFVC FLLWGSLELC NPQPVWHDES QHLMPSKPPA VMVECQEDQL bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 VVTVSKDLFG TGKLIRPADL TLGPDNCEPL VSMDTDTVVR FEVGLHACGN bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 SVQVTDDALV YSTFLFHNPR PVGNLSILRT NRAEVPIECR YPRQGNVSSW bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 AILPTWVPFR TTMFSEEKLV FSLRLMEENW SAEKTTPTFQ LGDRAHLQAQ bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 VHTGSHVPLR VFVDHCVATL TPDWSTSPYH TIVDFHGCLV DGLTDASSAF bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 KTPRPRPETL QFTVDVFQFA NDSRNTIYIT CHLKVTPVDR VPDQISKACS bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 FSKSSSRWSP VEGPVDICRC CNKGHCGVSG RSRRLTHLEG QSVPRSRRHV bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 TEEADVTVGP LIFLGKTSDH GLLEALGNGP ETRAQSGLKP LGKTEGVLGK bmy_17490T0/1-885 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000014070/1-544 MAMAPSPSLA QVYTSPVAVA VWEWQDGLGT WHPYSATVCN YIEQQFVQQK ENSP00000322885/1-622 MAMAPSPSLV QVYTSPAAVA VWEWQDGLGT WHPYSATVCS FIEQQFVQQK ENSBTAP00000001923/1-572 MAMAPSPSLA QVYTSPVAVA VWEWQDGLGT WHPYSAAVCS YIEQQFVQQK BACU012041/1-972 MAMAPSPSLA QVYTSPVAVA VWEWQDGLGT WHPYSATVCS YIEQQFVQQK bmy_17490T0/1-885 MAMAPSPSLA QGYTSPVAVA VWEWQDGLGT WHPYSATVCN YIEQQFVQQK 451 500 ENSTTRP00000014070/1-544 GQRFGLGSLA HSIPLGQADP SLAPYIIDLP SWTQFRQDTG TMRAVRRHLF ENSP00000322885/1-622 GQRFGLGSLA HSIPLGQADP SLAPYIIDLP SWTQFRQDTG TMRAVRRHLF ENSBTAP00000001923/1-572 GQRFGLGSLA HSIPLGQADP SLAPYIIDLP SWTQFRQDTG TMRAVRRHLF BACU012041/1-972 GQRFGLGSLA HSIPLGQADP SLAPYIIDLP SWTQFRQDTG TMRAVRRHLF bmy_17490T0/1-885 GQRFGLGSLA HSIPLGQADP SLAPYIIDLP SWTQFRQDTG TMRAVRRHLF 501 550 ENSTTRP00000014070/1-544 PQHSAPGRGI VWEWLSDDGS WTAYEASVCD YLEQQVARGA QLVDLAALGY ENSP00000322885/1-622 PQHSAPGRGV VWEWLSDDGS WTAYEASVCD YLEQQVARGN QLVDLAPLGY ENSBTAP00000001923/1-572 AQHSAPGRGI VWEWLGDDNS WTAYEASVCD YLEQQVAQGN QLVDLAPLGY BACU012041/1-972 PQHSAPGLGI VWEWLSDDGS WTAYEASVCD YLEQQVARGS QLMDLAPLGY bmy_17490T0/1-885 PQHSAPGRGI VWEWLSDDGS WTAYEASVCD HLEQQVARGN QLVDLAPLGY 551 600 ENSTTRP00000014070/1-544 NYTVNCATHT QTNKTSSFCR SVRRQAGPPY PATTVIAPPG HTGVACSCHQ ENSP00000322885/1-622 NYTVNYTTHT QTNKTSSFCR SVRRQAGPPY PVTTIIAPPG HTGVACSCHQ ENSBTAP00000001923/1-572 NYTVNYATHT QTNKTSSFCR SVRRQAGPPY PVTTVIAPPG HTGVACSCHQ BACU012041/1-972 NYTVNYATHT QTNKTSSFCR SVRRQAGPPY PVTTVIAPPG HTGVACSCHQ bmy_17490T0/1-885 NYTVNYATHT QTNKTSSFCR SVRRQAGPPY PVTTVIAPPG HTGVACSCHQ 601 650 ENSTTRP00000014070/1-544 CLGGGAAGPM SGRYRHSMTN LPAYAVPQ-P PHRTAVVLGA HQAFSPYNKP ENSP00000322885/1-622 CLSGSRTGPV SGRYRHSMTN LPAYPVPQHP PHRTASVFGT HQAFAPYNKP ENSBTAP00000001923/1-572 CLSGGTTGPV SGRYRHSMTN LPAYPVPQ-P PHRTAIVWGT HQAFAPYNKP BACU012041/1-972 CLGGGAAGPV SGRYRHSMTS LPAYPVPQ-P PHRTAVVLGA HQAFAPYNKP bmy_17490T0/1-885 CLGGGAAGPV SGRYRHSMTS LPAYPVPQ-P PHRTAVVLGA HQAFAPYNKP 651 700 ENSTTRP00000014070/1-544 SLSGARSAPK LSTANLWAGA LPSLGNQPLY RSSLSHVGPQ HQPPGLSAAG ENSP00000322885/1-622 SLSGARSAPR LNTTNAWGAA PPSLGSQPLY RSSLSHLGPQ HLPPGSSTSG ENSBTAP00000001923/1-572 SLSGARSAPR LNTTNPWAGA PPSLGSAPLC RSSLSHLASQ HQPSGPSATG BACU012041/1-972 SLSGARSAPR LSTANLWAGA LPSLGNQPLY RSSLSHLGPQ HQPPGPSAAG bmy_17490T0/1-885 SLSGARSAPR LSTANLWAGA LPSLGNQPLY RSSLSHLGPQ HQPPGPSAAG 701 750 ENSTTRP00000014070/1-544 AAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXMTS ILMSAIGLPV ENSP00000322885/1-622 AVSASLPSGP SSSPGSVPAT VPMQMPKPSR VQQALAGMTS VLMSAIGLPV ENSBTAP00000001923/1-572 AASASLPSGP VSSPRSVPAT VPVKMPKPSR VQQALAG--- ---------- BACU012041/1-972 AASASLPGGP VSSPRSVPAT VPVQMPKPSR VQQALAG--- ---------- bmy_17490T0/1-885 AASASLPGGP VSSPRSVPAT VPVQMPKPSR VQQALAG--- ---------- 751 800 ENSTTRP00000014070/1-544 CLSRAPQPAS PPASCLASKS HSSVKRLRKM SMKGGPPK-- PEPEQVIKNY ENSP00000322885/1-622 CLSRAPQPTS PPASRLASKS HGSVKRLRKM SVKGATPKPE PEPEQVIKNY ENSBTAP00000001923/1-572 ---------- ---------- ---------- ----GSPK-- PEPEQVIRNY BACU012041/1-972 ---------- ---------- ---------- ----GPPK-- PEPEQVIKNY bmy_17490T0/1-885 ---------- ---------- ---------- ----GPPK-- PEPEQVIKNY 801 850 ENSTTRP00000014070/1-544 TEELKTALDE XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000322885/1-622 TEELKVPPDE DCIICMEKLS TASGYSDVTD SKAIGSLAVG HLTKCSHAFH ENSBTAP00000001923/1-572 TEELKTAPEE DCIICMEKLS VASGYSDVTD SKTFGPMAVG CLAKCSHTFH BACU012041/1-972 TEELKTALDE DCIICMEKLS MASGYSDVTD STTFGPVAVG RLAKCSHAFH bmy_17490T0/1-885 TEELKTALDE DCIICMEKLS MASGYSDVTD SKTFGPVAVG RLAKCSHAFH 851 900 ENSTTRP00000014070/1-544 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000322885/1-622 LLCLLAMYCN GNKDGSLQCP SCKTIYGEKT GTQPQGKMEV LRFQMSLPGH ENSBTAP00000001923/1-572 LLCLLAMYCN GNKDGSLQCP SCKTIYGEKT GTQPRGKMEV FTFQMSLPGH BACU012041/1-972 LLCLLAMYCN GNKDGSLQCP SCKTIYGEKT GTQPRGKMEV FTFQVSLPGH bmy_17490T0/1-885 LLCLLAMYCN GNKDGSLQCP SCKTIYGEKT GTQPRGKMEV FTFQVSLPGH 901 950 ENSTTRP00000014070/1-544 XXXXXXXXXX XXXXXXXGPE HPNPGKPFTA RGFPRQCYLP DNAQGRK--- ENSP00000322885/1-622 EDCGTILIVY SIPHGIQGPE HPNPGKPFTA RGFPRQCYLP DNAQGRKVLE ENSBTAP00000001923/1-572 EDCGTILIVY NIPHGIQGPE HPNPGKPFTA RGFPRQCYLP DNAQGRKVLE BACU012041/1-972 EDCGTILIVY NIPHGIQGPE HPNPGKPFTA RGFPRQCYLP DNAQGRKVLE bmy_17490T0/1-885 EDCGTILIVY NIPHGIQGPE HPNPGKPFTA RGFPRQCYLP DNAQGRKVLE 951 1000 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 LLKVAWKRRL IFTVGTSSTT GETDTVVWNE IHHKTEMDRN ITGHGYPDPN ENSBTAP00000001923/1-572 LLKVAWKRRL IFTVGTSSTT GETDTVVWNE IHHKTEMDRN VTGHGYPDPN BACU012041/1-972 LLKVAWKRRL IFTVGTSSTT GETDTVVWNE IHHKTEMDRN VTGHGYPDPN bmy_17490T0/1-885 LLKVAWKRRL IFTVGTSSTT GETDTVVWNE IHHKTEMDRN VTGHGYPDPN 1001 1050 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 YLQNVLAELA AQGV------ ---------- ---------- ---------- ENSBTAP00000001923/1-572 YLQNVLAELA AQGV------ ---------- ---------- ---------- BACU012041/1-972 YLENVLAELA AQGV------ ---------- ---------- ---------- bmy_17490T0/1-885 YLENVLAELA AQGLRPWLLL LVVLVWPQPC VSLGEWGSRD GCPWPDPRGW 1051 1100 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 ---------- ---------- ---------- ---------- ---------- bmy_17490T0/1-885 GTCWDPGSPP PPIGRGSPRG SGPWTLTPIS MAAELVPYTP RITAWDLEGK 1101 1150 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 ---------- ---------- ---------- ---------- ---------- bmy_17490T0/1-885 VTAATFSLEQ PRCVLEGHAS VASTVWLVVA FSNASRDFQN PQTLAEIPAF 1151 1200 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- --------TE DCLEQQ---- ENSBTAP00000001923/1-572 ---------- ---------- ---------- --------TE DCLEQQ---- BACU012041/1-972 ---------- ---------- ---------- --------TE DCLGQQ---- bmy_17490T0/1-885 PRLLTDGHYM TLPLTLDQLP CEDPVGGRGG ALVLRVGNDA GCLAHLQQPR 1201 1250 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 ---------- ---------- ---------- ---------- ---------- bmy_17490T0/1-885 YCNAPLPGPG PYRVKFLLMD SKGSPQAQTR WSDPITLRQG KSPGSIDMWP 1251 1300 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ---------- ---------- ENSP00000322885/1-622 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ---------- ---------- BACU012041/1-972 ---------- ---------- ---------- ---------- ---------- bmy_17490T0/1-885 GRRSGDMIVI TSILSSLAGL LLLAFLAASS VRFSSLWWPE EAPEQLRIGS 1301 1350 ENSTTRP00000014070/1-544 ---------- ---------- ---------- ----- ENSP00000322885/1-622 ---------- ---------- ---------- ----- ENSBTAP00000001923/1-572 ---------- ---------- ---------- ----- BACU012041/1-972 ---------- ---------- ---------- ----- bmy_17490T0/1-885 FMGTRYMTHH IPPSEAATLP VGCEPGLEPL PSLSP