KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:48 2014 Check: 00 .. Name: ENSP00000357073/1-1179 Len: 1347 Check: 3426 Weight: 1.00 Name: ENSBTAP00000001940/1-1179 Len: 1347 Check: 7954 Weight: 1.00 Name: ENSTTRP00000001711/1-1188 Len: 1347 Check: 449 Weight: 1.00 Name: bmy_06303T0/1-691 Len: 1347 Check: 8443 Weight: 1.00 Name: BACU003885/1-1338 Len: 1347 Check: 7320 Weight: 1.00 // 1 50 ENSP00000357073/1-1179 ---------M VWCLGLAVLS LVI------- ---------- ---------- ENSBTAP00000001940/1-1179 ---------M VWCLSLAILS LII------- ---------- ---------- ENSTTRP00000001711/1-1188 EGPGEQSWAM VWCLSLAILS LII------- ---------- ---------- bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 -MSGGVPKGG AWGVPLTLPA VCCPGSCVLS SAHLETHQPS CGAPPLRSSF 51 100 ENSP00000357073/1-1179 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001940/1-1179 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001711/1-1188 ---------- ---------- ---------- ---------- ---------- bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 YLSGDTLRNH VTPLGGAVSF LFPVTSEQDA GNHACEAENS VSKETSKPET 101 150 ENSP00000357073/1-1179 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001940/1-1179 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001711/1-1188 ---------- ---------- ---------- ---------- ---------- bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 LSVEGKAGLD VTYCWISWED GTDTAHEGSV LSTSWRPGDK AVSYTCRANN 151 200 ENSP00000357073/1-1179 ---------- ---------- ---------S QGADGRGKPE VVSVVGRAGE ENSBTAP00000001940/1-1179 ---------- ---------- ---------S QGADGRGKPE VVSVVGRAGE ENSTTRP00000001711/1-1188 ---------- ---------- ---------G QGADGRGKPE VVSVVGRAGE bmy_06303T0/1-691 ---------- ---------- ---------- ----GRGKPE AVS--GRAGE BACU003885/1-1338 PISDISSRLI HAGPFCAVTL FQPHVLPTPA FGKESRGKPE AVS--GRAGE 201 250 ENSP00000357073/1-1179 SVVLGCDLLP PAGRPPLHVI EWLRFGFLLP IFIQFGLYSP RIDPDYVGRV ENSBTAP00000001940/1-1179 SAVLGCDLLP PAGRPPLHVI EWLRFGFLLP IFIQFGLYSP RIDPDYVGRV ENSTTRP00000001711/1-1188 SAVLGCDLLS PAGRPPLHVI EWLRFGFLLP IFIQFGLYSP RIDPAYVGRV bmy_06303T0/1-691 SAVLGCDLLP PAGRPPLHVI EWLRFGFLLP IFIQFGLYSP RIDPAYVGRV BACU003885/1-1338 SAVLGCDLLP PAGRPPLHVI EWLRFGFLLP IFIQFGLYSP RIDPAYVGRV 251 300 ENSP00000357073/1-1179 RLQKGASLQI EGLRVEDQGW YECRVFFLDQ HIPEDDFANG SWVHLTVNSP ENSBTAP00000001940/1-1179 RLQKGASLQI EELRVEDQGW YECRVLFLDQ HTPEEDSANG SWVHLTVNSP ENSTTRP00000001711/1-1188 RLQKGASLQI EGLPAEDQGW YECRVLFLDQ HRPEDDSANG SWVHLTVNSP bmy_06303T0/1-691 RLQKGASLQI EGLRAEDQGW YECRVLFLDQ HRPEDDSANG SWVHLTVNSP BACU003885/1-1338 RLQKGASLQI EGLRAEDQGW YECRVLFLDQ HRPEDDSANG SWVHLTVNSP 301 350 ENSP00000357073/1-1179 PQFQETPPAV LEVQELEPVT LRCVARGSPL PHVTWKLRGK DLGQGQGQVQ ENSBTAP00000001940/1-1179 PQFLETPPQV LEVWEREPVT LRCVAQGNPQ PRVTWKLRGQ DLGQGQSQVQ ENSTTRP00000001711/1-1188 PQFLETPPQV LEVRELEPVT LRCAARGSPQ PRVTWKLLGQ DLGQGQSQVQ bmy_06303T0/1-691 PQFLETPPQV LEVRELEPVT LRCAARGSPQ PRVTWKLRGQ DLGQGQSQVQ BACU003885/1-1338 PQFLETPPQV LEVRELEPVT LRCAARGSPQ PRVTWKLRGQ DLGQGQSQVQ 351 400 ENSP00000357073/1-1179 VQNGTLRIRR VERGSSGVYT CQASSTEGSA THATQLLVLG PPVIVVPPKN ENSBTAP00000001940/1-1179 VLNGTLRIRR VERSSAGVYT CQASSTEGSA THATQLLVLG PPVIVVPPKN ENSTTRP00000001711/1-1188 VQNGTLRIRR VERGSSGVYT CQASSTEGSA IHATQLLVLG PPVIVVPPKN bmy_06303T0/1-691 VQNGTLRIRR VERGSSGVYT CQASSTEGSA THATQLLVLG PPVIVVPPKN BACU003885/1-1338 VQNGTLRIRR VERGSSGVYT CQASSTEGSA THATQLLVLG PPVIVVPPKN 401 450 ENSP00000357073/1-1179 STVNASQDVS LACHAEAYPA NLTYSWFQDN INVFHISRLQ PRVRILVDGS ENSBTAP00000001940/1-1179 STVNASQDVS LACRAEAYPA NLTYSWFQDS TNVFHISRLQ PRVRILVDGS ENSTTRP00000001711/1-1188 STVNASQDVS LACQAEAYPA NLTYSWFQDS TNVFHISRLQ PRVRILVDGS bmy_06303T0/1-691 STVNASQDVS LACQAEAYPA NLTYSWFQDS TNVFHISRLQ PRVRILVDGS BACU003885/1-1338 STVKASQDVS LACQAEAYPA NLTYSWFQDS TNVFHISRLQ PRVRILVDGS 451 500 ENSP00000357073/1-1179 LRLLATQPDD AGCYTCVPSN GLLHPPSASA YLTVLYPAQV TAMPPETPLP ENSBTAP00000001940/1-1179 LRLQAAQPDD AGRYTCVPSN GLPRPPSASA YLTVLYPAQV TAMPPETPLP ENSTTRP00000001711/1-1188 LRLQAAQPDD AGRYTCVPSN GLPRPPSASA YLTVLYPAQV TAMPPETPLP bmy_06303T0/1-691 LRLQAAQPDD AGRYTCVPSN GLPRPPSASA YLTVLYPAQV TAMPPETPLP BACU003885/1-1338 LRLQAAQPDD AGRYTCVPSN GLSRPPSASA YLTVLYPAQV TAMPPETPLP 501 550 ENSP00000357073/1-1179 IGMPGVIRCP VRANPPLLFV SWTKDGKALQ LDKFPGWSQG TEGSLIIALG ENSBTAP00000001940/1-1179 VGMRGVIRCP VRANPPLLFV SWTKDGQALQ LDKFPGWSQG PEGSLIIALG ENSTTRP00000001711/1-1188 MGMRGVIRCP VRANPPLLFV SWTKDGQALQ LDKFPGWSQG PEGSLIIALG bmy_06303T0/1-691 VGMRGVIRCP VRANPPLLFV SWTKDGQALQ LDKFPGWSQG PEGSLIIALG BACU003885/1-1338 VGMRGVIRCP VRANPPLLFV SWTKDGQALQ LDKFPGWSQG PEGSLIIALG 551 600 ENSP00000357073/1-1179 NEDALGEYSC TPYNSLGTAG PSPVTRVLLK APPAFIERPK EEYFQEVGRE ENSBTAP00000001940/1-1179 NEDALGEYSC TPYNSLGTAG PSPVTRVLLK APPAFLERPK EEYFQEVGRE ENSTTRP00000001711/1-1188 NEDVLGEYSC TPYNRLGTAG PSPVTRVLLK APPAFLERPK EEYFQEVGRE bmy_06303T0/1-691 NEDVLGEYSC TPYNRLGTAG PSPVTRVLLK APPAFLERPK EEYFQEVGRE BACU003885/1-1338 NEDVLGEYSC TPYNRLGTAG PSPVTRVLLK APPAFLERPK EEYFQEVGRE 601 650 ENSP00000357073/1-1179 LLIPCSAQGD PPPVVSWTKV GRGLQGQAQV DSNSSLILRP LTKEAHGHWE ENSBTAP00000001940/1-1179 LLIPCSARGD PSPTISWAKV GRGPQGQAQV DSNSSLILRP LTKEAHGRWE ENSTTRP00000001711/1-1188 LLIPCSARGD PSPTISWAKV GRGLQGQAQV DSNSSLILRP LTKEAHGRWE bmy_06303T0/1-691 LLIPCSAQGD PSPTISWAKV GRGLQGQAQV ESNSSLILRP LTKEAHGRWE BACU003885/1-1338 LLIPCSARGD PSPTISWAKV GRGLQGQAQV ESNSSLILRP LTKEAHGRWE 651 700 ENSP00000357073/1-1179 CSASNAVARV ATSTNVYVLG TSPHVVTNVS VVALPKGANV SWEPGFDGGY ENSBTAP00000001940/1-1179 CTASNAVARV AASTNVYVLG TSPHVVTNVS VVPLPKGANV SWEPGFDGGY ENSTTRP00000001711/1-1188 CTASNAVARV ATSTNVYVLG TSPHVVTNVS VVPLPKGANV SWEPGFDGGY bmy_06303T0/1-691 CTASNAVARV AASTNVYVLG TSPHVVTNVS VVPLPKGANV SWEPGFDGGY BACU003885/1-1338 CTASNAVARV ATSTNVYVLG TSPHVVTNVS VVPLPKGANV SWEPGFDGGY 701 750 ENSP00000357073/1-1179 LQRFSVWYTP LAKRPDRMHH DWVSLAVPVG AAHLLVPGLQ PHTQYQFSVL ENSBTAP00000001940/1-1179 LQRFSVWYTP LAKRPDRAHH DWVSLAVPVG TAFLLVPGLQ PHTQYQFSVL ENSTTRP00000001711/1-1188 LQRFSVWYTP LAKRPDRAHY DWVSLAVPLG AAHLLVPGLQ PHTQYQFSVL bmy_06303T0/1-691 LQRFSVWYTP LAKRPDRAHY DWVSLAVPVG AAHLLVPGLQ PHTQYQFSVL BACU003885/1-1338 LQRFSVWYTP LAKRPDRAHY DWVSLAVPVG AAHLLVPGLQ PHTQYQFSVL 751 800 ENSP00000357073/1-1179 AQNKLGSGPF SEIVLSAPEG LPTTPAAPGL PPTEIPPPLS PPRGLVAVRT ENSBTAP00000001940/1-1179 AQNKLGSGPF SEIVLSAPEG LPTTPAAPSP PPTEMSPPLS PPRGLVAVRT ENSTTRP00000001711/1-1188 AQNKLGSGPF SEIVLSAPEG LPTTPAAPSP PATEMPPPLS PPRGLVAVRT bmy_06303T0/1-691 AQNKLGSGPF SEIVLSAPEG LPTTPAAPSP PPTEMLPPLS PPRGLVAVRT BACU003885/1-1338 AQNKLGSGPF SEIVLSAPEG LPTTPAAPSP PPTEMLPPLP PPRGLVAVRT 801 850 ENSP00000357073/1-1179 PRGVLLHWDP PELVPKRLDG YVLEGRQGSQ GWEVLDPAVA GTETELLVPG ENSBTAP00000001940/1-1179 PRGVLLHWDP PELVPKRLDG YILEGRQGSQ GWEVLDRAVA GTEMQLLVPG ENSTTRP00000001711/1-1188 ARGVLLHWDP PELVPKRLDG YVLEARQSSQ GWEVLDRAVA GSEMQLLVPG bmy_06303T0/1-691 PRGVLLHWDP PELVPKRLDG YVLEARQGSQ GWEVLDRAVA GSEMQLLVPG BACU003885/1-1338 PRGVLLHWDP PELVPKRLDG YVLEARQGSQ GWEVLDRAVA GSEMQLLVPG 851 900 ENSP00000357073/1-1179 LIKDVLYEFR LVAFAGSFVS DPSNTANVST SGLEVYPSRT QLPGLLPQPV ENSBTAP00000001940/1-1179 LIKDVLYEFR LVAFSGSYVS DPSNTANVST SGLEVYPSRT QLPGLLPQPV ENSTTRP00000001711/1-1188 LIKDVLYEFR LVAFAGSYVS DPSNTANVST SGLEVYPSRT QLPGLLPQPV bmy_06303T0/1-691 LIK------- ---------- ---------- ---------- ---------- BACU003885/1-1338 LIKDVLYEFR LVAFAGSYVS DPSNTANVST SGLEVYPSRT QLPGLLPQPV 901 950 ENSP00000357073/1-1179 LAGVVGGVCF LGVAVLVSIL AGCLLNRRRA ARRRRKRLRQ DPPLIFSPTG ENSBTAP00000001940/1-1179 LAGVVGGVCF LGVAVLVSIL AACLMNRRRA ARRRRKRLRQ DPPLIFSPAG ENSTTRP00000001711/1-1188 LAGVVGGDCF LGVAVLVSIL AACLMNRRRA ARRHSKRLRQ DAPLIFSRAG bmy_06303T0/1-691 -VGVGG---- ---------- ---------- ---------- ---------- BACU003885/1-1338 LAGVVGGVCF LGVAVLVSIL AACLMNRRRA ARRRRKRLRQ DPPLIFSPAG 951 1000 ENSP00000357073/1-1179 KSAAPSALGS GSPDSVAKLK LQGSPVPSLR QSLLWGDPAG TPSPHPDPPS ENSBTAP00000001940/1-1179 KSAPHSAPGS GSPDSVAKLK LQGSPVPSLR QSLLWGDPAG PPSPPPDPPP ENSTTRP00000001711/1-1188 KSASPXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06303T0/1-691 ---------- ---------- ---------- -----GHREG PLSSPPAL-- BACU003885/1-1338 KSAPHSASGS GSPDSVAKLK LQGSPVPSLR QSLLWGEPAG PPNPPPDPPP 1001 1050 ENSP00000357073/1-1179 SRGPLPLEPI ---CRGPDGR FVMGPTVAAP QERSGREQAE PRTPAQRLAR ENSBTAP00000001940/1-1179 SRGPLPLEPI ---CRGPDGR FVMGPQVGTS REKSGPEQSE PRTPARRQAR ENSTTRP00000001711/1-1188 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06303T0/1-691 ---------- ---CSTPQT- ---------- ---------- ---------- BACU003885/1-1338 SRGPLPLEPI ---CRGPDGR FVMGPKVGTS QEKSGPEQAE PRTPAQRQAR 1051 1100 ENSP00000357073/1-1179 SFDCSSSSPS GAPQPLCIED ISPVAPPPAA PPSPLPGPGP LLQYLSLPFF ENSBTAP00000001940/1-1179 SYDCSSSSPS GMPQPLCIAD ISPVGPPRPA PPSPLPGPGP LLQYLSLPFF ENSTTRP00000001711/1-1188 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 SYD-GSSSPS GMPQPLCIAD ISPVRPPPAA PPSSLPGPGP LLQYLSLPFF 1101 1150 ENSP00000357073/1-1179 REMNVDGDWP PLEEPSPAAP PDYMDTRRCP TSSFLRSPET PPVSPRESLP ENSBTAP00000001940/1-1179 REMNVDGDWL PVEEPGPAPP PDYMDTRPCP TSSNLQPLDC SSESPRAALP ENSTTRP00000001711/1-1188 XXXXXXXXXX XXXXXX---X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 REMNVDGDWP PLEEPAP--P PDYMDTRPRP TSSLLHPLDS RSEFPRAALP 1151 1200 ENSP00000357073/1-1179 GAVVGAGATA EPPYTALADW TLRERLLPGL LPAAPRGSLT SQSSGRGSAS ENSBTAP00000001940/1-1179 GVMVGVGAAP EPPYTALVDW TMRERLLPSL LPAAPRGSLT SQSSGRGSAS ENSTTRP00000001711/1-1188 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 GAMLGVGASP EPPYTALTDW TLRERLLPSL LPAAPRGSLT SQSSGRGSAS 1201 1250 ENSP00000357073/1-1179 FLRPPSTAPS AGGSYLSPAP GDTSSWASGP ERWPRREHVV TVSKRRNTSV ENSBTAP00000001940/1-1179 FLRPPSTAPS AGGSYLSPAP GDTSSWASGP ERWPRREHVV TVSKRRNTSV ENSTTRP00000001711/1-1188 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXRNTSV bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 FLRPPSTAPS AGGSYLSPAP GDTSSWASGP ERWPRREHVV TVSTRRNTSV 1251 1300 ENSP00000357073/1-1179 DENYEWDSEF PGDMELLETL HLGLASSRLR PEAEPELGVK TPEEGCLLNT ENSBTAP00000001940/1-1179 DENYEWDSEF PGDMELLETL HLGLAGPRSR LEAEPELGVK TPEEGCLLSA ENSTTRP00000001711/1-1188 DENYEWDSEF PGDMELLETL HLGLTGPRSR LEAEPELGAK TPEEGCLLNT bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU003885/1-1338 DENYEWDSEF PGDMELLETL HLGLTGPRSR LEAEPELGAK TPEERCLLST 1301 1350 ENSP00000357073/1-1179 AHVTGPEARC AALREEFLAF RRRRDATRAR LPAYRQPVPH PEQATLL ENSBTAP00000001940/1-1179 AHAPGPEARC AALREEFLAF RRRRDAARSR LPAYRQPVFH PEQATLL ENSTTRP00000001711/1-1188 AHAPGPEARC AALREEFLAF RRRRDAARFR LPAYRQPVSH PEQATLL bmy_06303T0/1-691 ---------- ---------- ---------- ---------- ------- BACU003885/1-1338 AHAPGPEARC AALREEFLAF RRRRDAARFR LPAYRQPVSH PEQATLL