KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:50 2014 Check: 00 .. Name: ENSTTRP00000000996/1-1254 Len: 1255 Check: 4589 Weight: 1.00 Name: bmy_15457T0/1-704 Len: 1255 Check: 8698 Weight: 1.00 Name: ENSP00000313070/1-1222 Len: 1255 Check: 4375 Weight: 1.00 Name: ENSBTAP00000001944/1-1228 Len: 1255 Check: 8767 Weight: 1.00 Name: BACU014809/1-1094 Len: 1255 Check: 9578 Weight: 1.00 // 1 50 ENSTTRP00000000996/1-1254 HIVIFISNEI KMSEGPRFFV GPEDTEINPG NYRHFFHHAD EDEEEEDESP bmy_15457T0/1-704 ---------- -MSEAPRFFV GPEDTEINPG NYRHFFHHAD EDDEEEDESP ENSP00000313070/1-1222 ---------- -MSEAPRFFV GPEDTEINPG NYRHFFHHAD EDDEEEDDSP ENSBTAP00000001944/1-1228 -----MSNEI KMSEAPRFFV GPEDTEINAG NYRHFFHHAD EDEEEEDESP BACU014809/1-1094 ---------- -MSEAPRFFV GPEDTEINPG NYRHFFHHAD EDDEEEDESP 51 100 ENSTTRP00000000996/1-1254 PERQIVVGIC SMAKKSKSKP MKEILERISL FKYITVVVFE EDVILNEPVE bmy_15457T0/1-704 PERQIVVGIC SMAKKSKSKP MKEILERISL FKYITVVVFE EDVILNEPVE ENSP00000313070/1-1222 PERQIVVGIC SMAKKSKSKP MKEILERISL FKYITVVVFE EEVILNEPVE ENSBTAP00000001944/1-1228 PERQIVVGIC SMAKKSKSKP MKEILERISL FKYITVVVFE EDVILNEPVE BACU014809/1-1094 PERQIVVGIC SMAKKSKSKP MKEILERISL FKYITVVVFE EDVILNEPVE 101 150 ENSTTRP00000000996/1-1254 NWPLCDCLIS FHSKGFPLDK AVAYAKLRNP FVINDLNMQY LIQDRREVYS bmy_15457T0/1-704 NWPLCDCLIS FHSKAL---- ---------Q YEVIHMKMPY EV---REVYS ENSP00000313070/1-1222 NWPLCDCLIS FHSKGFPLDK AVAYAKLRNP FVINDLNMQY LIQDRREVYS ENSBTAP00000001944/1-1228 NWPLCDCLIS FHSKGFPLDK AVAYAKLRNP FVINDLNMQY LIQDRREVYS BACU014809/1-1094 NWPLCDCLIS FHSKGFPLDK AVAYAKLRNP FVINDLNMQY LIQDRREVYS 151 200 ENSTTRP00000000996/1-1254 ILQAEGILLP RYAILNRDPN NPKECNLIEG EDHVEVNGEV FQKPFVEKPV bmy_15457T0/1-704 ILQAEGILLP RYAILNRDPN NPKECNLIEG EDHVEVNGEV FQKPFVEKPV ENSP00000313070/1-1222 ILQAEGILLP RYAILNRDPN NPKECNLIEG EDHVEVNGEV FQKPFVEKPV ENSBTAP00000001944/1-1228 ILQAEGILLP RYAILNRDPN NPKECNLIEG EDHVEVNGEV FQKPFVEKPV BACU014809/1-1094 ILQAEGILLP RYAILNRDPN NPKECNLIEG EDHVEVNGEV FQKPFVEKPV 201 250 ENSTTRP00000000996/1-1254 SAEDHNVYIY YPTSAGGGSQ RLFRKIGSRS SVYSPESNVR KTGSYIYEEF bmy_15457T0/1-704 SAEDHNVYIY YPTSAGGGSQ RLFRKIGSRS SVYSPESNVR KTGSYIYEEF ENSP00000313070/1-1222 SAEDHNVYIY YPTSAGGGSQ RLFRKIGSRS SVYSPESNVR KTGSYIYEEF ENSBTAP00000001944/1-1228 SAEDHNVYIY YPTSAGGGSQ RLFRKIGSRS SVYSPESNVR KTGSYIYEEF BACU014809/1-1094 SAEDHNVYIY YPTSAGGGSQ RLFRKIGSRS SVYSPESNVR KTGSYIYEEF 251 300 ENSTTRP00000000996/1-1254 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE VRYPVILNAR bmy_15457T0/1-704 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE VRYPVILNAR ENSP00000313070/1-1222 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE VRYPVILNAR ENSBTAP00000001944/1-1228 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE VRYPVILNAR BACU014809/1-1094 MPTDGTD--V YTVGPDYAHA EARKSPALDG KVERDSEGKE VRYPVILNAR 301 350 ENSTTRP00000000996/1-1254 EKLIAWRVCL AFKQTVCGFD LLRANGQSYV CDVNGFSFVK NSMKYYDDCA bmy_15457T0/1-704 EKLIAWKVCL AFKQTVCGFD LLRANGQSYV CDVNGFSFVK NSMKYYDDCA ENSP00000313070/1-1222 EKLIAWKVCL AFKQTVCGFD LLRANGQSYV CDVNGFSFVK NSMKYYDDCA ENSBTAP00000001944/1-1228 EKLIAWKVCL AFKQTVCGFD LLRANGQSYV CDVNGFSFVK NSMKYYDDCA BACU014809/1-1094 EKLIAWKVCL AFKQTVCGFD LLRANGQSYV CDVNGFSFVK NSMKYYDDCA 351 400 ENSTTRP00000000996/1-1254 KILGNIVMRE LAPQFHIPWS IPLEAEDIPI VPTTSGTMME LRCVIAVIRH bmy_15457T0/1-704 KILGNIVMRE LAPQFHIPWS IPLEAEDIPI VPTTSGTMME LRCVIAVIRH ENSP00000313070/1-1222 KILGNIVMRE LAPQFHIPWS IPLEAEDIPI VPTTSGTMME LRCVIAVIRH ENSBTAP00000001944/1-1228 KILGNIVMRE LAPQFHIPWS IPLEAEDIPI VPTTSGTMME LRCVIAVIRH BACU014809/1-1094 KILGNIVMRE LAPQFHIPWS IPLEAEDIPI VPTTSGTMME LRCVIAVIRH 401 450 ENSTTRP00000000996/1-1254 GDRTPKQKMK MEVRHQ-KFF DLFEKCDGYK SGKLKLKKPK QLQEVLDIAR bmy_15457T0/1-704 GDRTPKQKMK MEVRHQKKIL SFINQSRGAT S-----YSER GHTEVLDIAR ENSP00000313070/1-1222 GDRTPKQKMK MEVRHQ-KFF DLFEKCDGYK SGKLKLKKPK QLQEVLDIAR ENSBTAP00000001944/1-1228 GDRTPKQKMK MEVRHQ-KFF DLFEKCDGYK SGKLKLKKPK QLQEVLDIAR BACU014809/1-1094 GDRTPKQKMK ME-------- ---------- ---------- ---EVLDIAR 451 500 ENSTTRP00000000996/1-1254 QLLIELGQNN DSEIEENKSK LEQLKTVLEM YGHFSGINRK VQLTYLPHGC bmy_15457T0/1-704 QLLIELGQNN DSEIEENKSK LEQLKTVLEM YGHFSGINRK VQLTYLPHGC ENSP00000313070/1-1222 QLLMELGQNN DSEIEENKPK LEQLKTVLEM YGHFSGINRK VQLTYLPHGC ENSBTAP00000001944/1-1228 QLLMELGQNN DSEIEENKSK LEQLKTVLEM YGHFSGINRK VQLTYLPHGC BACU014809/1-1094 QLLIELGQNN DSEIEENKSK LEQLKTVLEM YGHFSGINRK VQLTYLPHGC 501 550 ENSTTRP00000000996/1-1254 RKTSSEEEDS RREEPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ bmy_15457T0/1-704 PKTSSEEEDS RREEPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ ENSP00000313070/1-1222 PKTSSEEEDS RREEPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ ENSBTAP00000001944/1-1228 PKTSSEEEDS RREEPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ BACU014809/1-1094 PKTSSEEEDS RREEPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ 551 600 ENSTTRP00000000996/1-1254 GDYAGFPGCG LLRLHSTYRH DLKIYASDEG RVQMTAAAFA KGLLXXXXXX bmy_15457T0/1-704 GDYAGFPGCG LLRLHSTYRH DLKIYASDEG RVQMTAAAFA ---------- ENSP00000313070/1-1222 GDYAGFPGCG LLRLHSTYRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL ENSBTAP00000001944/1-1228 GDYAGFPGCG LLRLHSTYRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL BACU014809/1-1094 GDYAGFPGCG LLRLHSTYRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL 601 650 ENSTTRP00000000996/1-1254 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15457T0/1-704 ---------- ---------- ---------- ---------- ---------- ENSP00000313070/1-1222 TPILVQMVKS ANMNGLLDSD SDSLSSCQQR VKARLHEILQ KDRDFTAEDY ENSBTAP00000001944/1-1228 TPILVQMVKS ANMNGLLDSD SDSLSSCQQR VKARLHEILQ RDRDFTAEDY BACU014809/1-1094 TPILVQMVKS ANMNGLLDSD SDSLSSCQQR VKARLHEILQ KDRDFTAEDY 651 700 ENSTTRP00000000996/1-1254 XXLTPSGSIS LIKSMHLIKN PVKTCDKVYF LIQSLTSQIR HRMEDPKSSD bmy_15457T0/1-704 -KLTPSGSIS LIKSMHLIKN PVKTCDKVYF LIQSLTSQIR HRMEDPKSSD ENSP00000313070/1-1222 EKLTPSGSIS LIKSMHLIKN PVKTCDKVYS LIQSLTSQIR HRMEDPKSSD ENSBTAP00000001944/1-1228 EKLTPSGSIS LIKSMHLIKN PVKTCDTVYS LIQSLTSQIR HRMEDPKSSD BACU014809/1-1094 EKLTPSGSIS LIKSMHLIKN PVKTCDKVYF LIQSLTSQIR HRMEDPKSSD 701 750 ENSTTRP00000000996/1-1254 IQLYHSETLE LMLRRWSKLE KDFKTKNGRY DISKIPDIYD CIKYDVQHNG bmy_15457T0/1-704 IQLYHSETLE LMLRRWSKLE KDFKTKNGRY DISKIPDIYD CIKYDVQHNG ENSP00000313070/1-1222 IQLYHSETLE LMLRRWSKLE KDFKTKNGRY DISKIPDIYD CIKYDVQHNG ENSBTAP00000001944/1-1228 IQLYHSETLE LMLRRWSKLE KDFKTKNGRY DISKIPDIYD CIKYDVQHNG BACU014809/1-1094 IQLYHSETLE LMLRRWSKLE KDFKTKNGRY DISKIPDIYD CIKYDVQHNG 751 800 ENSTTRP00000000996/1-1254 SLKLENTMEL YRLSKALADI VIPQEYGITK AEKLEIAKGY CTPLVRKIRS bmy_15457T0/1-704 SLKLENTMEL YRLSKALADI VIPQ------ -----VSNSY ---------- ENSP00000313070/1-1222 SLKLENTMEL YRLSKALADI VIPQEYGITK AEKLEIAKGY CTPLVRKIRS ENSBTAP00000001944/1-1228 SLKLEDTMEL YRLSKALADI VIPQEYGITK AEKLEIAKGY CTPLVRKIRS BACU014809/1-1094 SLKLENTMEL YRLSKALADI VIPQEYGITK AEKLEIAKGY CTPLVRKIRS 801 850 ENSTTRP00000000996/1-1254 DLQRTQDDDT VNKLHPVYSR GVLSPERHVR TRLYFTSESH VHSLLSILRY bmy_15457T0/1-704 ---------- ---------- ---------- ---------- ---------- ENSP00000313070/1-1222 DLQRTQDDDT VNKLHPVYSR GVLSPERHVR TRLYFTSESH VHSLLSILRY ENSBTAP00000001944/1-1228 DLQRTQDDDT VNKLHPVYSR GVLSPERHVR TRLYFTSESH VHSLLSILRY BACU014809/1-1094 DLQRTQDDDT VNKLHPVYSR GVLSPERHVR TRLYFTSESH VHSLLSILRY 851 900 ENSTTRP00000000996/1-1254 GALCDESKDE QWKRAMDYLN VVSELNYMTQ IVIMLYEDPN KDLSSEERFH bmy_15457T0/1-704 ---------- ---------- ---------- ISIFLY---- ---------- ENSP00000313070/1-1222 GALCNESKDE QWKRAMDYLN VVNELNYMTQ IVIMLYEDPN KDLSSEERFH ENSBTAP00000001944/1-1228 GALCDESKDE QWKRAMDYLN VVNELNYMTQ IVIMLYEDPN KDLSSEERFH BACU014809/1-1094 GALCDESKDE QWKRAMDYLN VVNELNYMTQ IVIMLYEDPN KDLSSEERFH 901 950 ENSTTRP00000000996/1-1254 VELHFSPGAK GCEEDKNLPS GYGYRPASRE SEGRRSFKID SDDEPHTSKK bmy_15457T0/1-704 ---------- -C-------- ---------- ---------- ---------- ENSP00000313070/1-1222 VELHFSPGAK GCEEDKNLPS GYGYRPASRE NEGRRPFKID NDDEPHTSKR ENSBTAP00000001944/1-1228 VELHFSPGAK GCEEDKNLPS GYGYRPASRE NEGRRAFKID SDDEPHTSKK BACU014809/1-1094 VELHFSPGAK GCEEDKNLPS GYGYRPASRE NEGRRPFKID SDDEPHTSKK 951 1000 ENSTTRP00000000996/1-1254 DEVDRAVILF KPMVSEPIHI HRKSPLPRSR KMAANEEESP LSVSSPEGTG bmy_15457T0/1-704 ---------- ---------- ---------- ---------- ---------- ENSP00000313070/1-1222 DEVDRAVILF KPMVSEPIHI HRKSPLPRSR KTATNDEESP LSVSSPEGTG ENSBTAP00000001944/1-1228 DEVDRAVILF KPMVSEPIHI HRKSPLPRSR KMATNEEESP LSVSSPEGTG BACU014809/1-1094 DEVDRAVILF KPMVSEPIHI HRKSPLPRSR KMAANEEESP LSVSSPEGTG 1001 1050 ENSTTRP00000000996/1-1254 TWLHYTSGVG TGRRRRRSGE QITSSPVSPK SLAFTSSIFG SWQQVVSENA bmy_15457T0/1-704 ---------- ---------- ---------- ---------- ---------- ENSP00000313070/1-1222 TWLHYTSGVG TGRRRRRSGE QITSSPVSPK SLAFTSSIFG SWQQVVSENA ENSBTAP00000001944/1-1228 TWLHYTSGVG TGRRRRRSGE QITSSPVSPK SLAFTSSIFG SWQQVVSENA BACU014809/1-1094 TWLHYTSGVG TGRRRRRSGE QITSSPVSPK SLAFTSSIFG SWQQVVSENA 1051 1100 ENSTTRP00000000996/1-1254 NYLRTPRTLV EQKQNPTVGS HCAGLFSTSV LGGSSSAPNL QDYARTHRKK bmy_15457T0/1-704 -YIDT----- ---------- -----FKMSI SG-------- ---------- ENSP00000313070/1-1222 NYLRTPRTLV EQKQNPTVGS HCAGLFSTSV LGGSSSAPNL QDYARTHRKK ENSBTAP00000001944/1-1228 NYLRTPRTLV EQKQNPTVGS HCASLFSTSV LGGSSSAPNL QDYARTHRKK BACU014809/1-1094 NYLRTPRTLV EQKQNPTVGS HCAGLFSTSV LGGSSSAPNL QDYARTHRKK 1101 1150 ENSTTRP00000000996/1-1254 LTSSGCIDDA TRGSAVKRFS ISFARHPTNG FELYSMVPSI CPLETLHNAL bmy_15457T0/1-704 ---------- ---------- ---------- ---------- ---------- ENSP00000313070/1-1222 LTSSGCID-- ---------- ---------G FELYSMVPSI CPLETLHNAL ENSBTAP00000001944/1-1228 LTSSGCID-- ---------- ---------G FELYSMVPSI CPLETLHNAL BACU014809/1-1094 LTSSGCID-- ---------- ---------D ---------- ---------- 1151 1200 ENSTTRP00000000996/1-1254 SLKQVDEFLA SIASPSSEVP QKTPEISSSA SRSSPIIRRK VSLNTYTPAK bmy_15457T0/1-704 ---------- ---------- ---------- ---------- ---------- ENSP00000313070/1-1222 SLKQVDEFLA SIASPSSDVP RKTAEISSTA LRSSPIMRKK VSLNTYTPAK ENSBTAP00000001944/1-1228 SLKQVDEFLA SIASPSSEVP RKTPETSSLT SRSSPIMRRK VSLNTYTPAK BACU014809/1-1094 ---------- ---------- ---------A TRGSAVKRFS ISFARH---- 1201 1250 ENSTTRP00000000996/1-1254 ILPMPEATIK STKASSKPAP SGPSSMVVPN TSSWKKGVSS KTEMHEHKKN bmy_15457T0/1-704 ---------- ---------- ---------- ---------- ---------- ENSP00000313070/1-1222 ILPTPPATLK STKASSKPAT SGPSSAVVPN TSSRKKNITS KTETHEHKKN ENSBTAP00000001944/1-1228 ILPTPPASIK STKASSKPAP SGPSNTAVPN TSSRKKGVTS KTEMHEHKKN BACU014809/1-1094 ---------- ---------- --PTNGTFCF YFKR------ ---------- 1251 1300 ENSTTRP00000000996/1-1254 TAKKK bmy_15457T0/1-704 ----- ENSP00000313070/1-1222 TGKKK ENSBTAP00000001944/1-1228 TSKKK BACU014809/1-1094 -----