KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:52 2014 Check: 00 .. Name: ENSTTRP00000015752/1-318 Len: 1742 Check: 2981 Weight: 1.00 Name: ENSP00000309501/1-1742 Len: 1742 Check: 4468 Weight: 1.00 Name: ENSBTAP00000001952/1-1623 Len: 1742 Check: 8014 Weight: 1.00 Name: bmy_17430T0/1-1601 Len: 1742 Check: 2211 Weight: 1.00 Name: BACU007652/1-1284 Len: 1742 Check: 1800 Weight: 1.00 // 1 50 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 MWPAGAGTKL PCPRDSALRR AAFSGNLTAL PSHLVPAGRS VRVFISANPE ENSBTAP00000001952/1-1623 ---------- ---------- ---------- ---------- ---------- bmy_17430T0/1-1601 ---------- ---------- ---------- ---------- ---------- BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 DTGAERQALR ENVYPKLREF CRENYGLEFQ VIDLYWGVEE DEWDSPELQK ENSBTAP00000001952/1-1623 ---------- ---------- ---------- ---------- ---------- bmy_17430T0/1-1601 ---------- ---------- ---------- ---------- ---------- BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015752/1-318 ---------- ---------G LLGEKYGNIR IPGEVEASEF EMILDAAIEA ENSP00000309501/1-1742 TRMKLLENCL KTSAGPCFVG LLGEKYGNIR IPGEVEASEF EMILDAAIEA ENSBTAP00000001952/1-1623 ---------- ---------G LLGEKYGNIR IPGEVEASEF EMILDAAIEA bmy_17430T0/1-1601 ---------- ---------- ---------- ---------- -MILDAAVEA BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015752/1-318 KLETKLLEEW YCRDENAVPA AYYLRPKSEM LKSNKNAVQP PANAENEKTW ENSP00000309501/1-1742 KLETKLLEEW YCRDENSVPA AYYLRPKSEM LRSNRNAMQP STNAENEKTW ENSBTAP00000001952/1-1623 KLDTKLLEEW YCRDENSVPA AYYLRPKSEM LKSNTNAMQP SANAENEKTW bmy_17430T0/1-1601 KLETKLLEEW YCRDENSVPA AYYLRPKSEM LKSNKNAMQP SANAENEKTW BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000015752/1-318 QEISDEIKKV FKVAVKLLHE KRKMKHSQAK RYLFSAIEDE FDFALGKQTP ENSP00000309501/1-1742 QEISDEIKKI FKAAVKLLHE KGKMKHSQAK RYLFSAIEDE FDFALGKQTP ENSBTAP00000001952/1-1623 QEISDEIKKI FKTAVKLLHE KGKMKHSQAK RYLFSAIEDE FDFALGKQTP bmy_17430T0/1-1601 QEISDEIKKV FKVAVKLLHE KRKMKHSQAK RYLFSAIEDE FDFALGKQTP BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015752/1-318 AFLKKCVCYI RKIANIERFV KIPEMGKYMD ITGAEPRIIR DPEAQEKLIK ENSP00000309501/1-1742 AFLKKCVCYI RKIANIERFV KIPEMGKYMD ITGTEPRIIR DPEAQEKLIK ENSBTAP00000001952/1-1623 AFLKKCVCYI RKIANIERFV KIPEMGKYMD ITGTEPRIIR DPEAQEKLIK bmy_17430T0/1-1601 AFLKKCVCYI RKIANIERFV KIPEMGKYMD ITGAEPRIIR DPEAQEKLIK BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000015752/1-318 LRDEFIPTIV ASSNLRVYTS VTHCDMKLGY SQEIENHYIE GLGKQFYEDM ENSP00000309501/1-1742 LRDEFIPTIV ASSNLRVYTS VTHCDMKLGY SQEIENHYIE GLGKQFYEDM ENSBTAP00000001952/1-1623 LRDEFIPTIV ASSNLRVYTS VTHCDMKLGY SQEIENHYIE GLGKQFYEDM bmy_17430T0/1-1601 LRDEFIPTIV ASSNLRVYTS VTHCDMKLGY SQEIENHYIE GLGKQFYEDM BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000015752/1-318 IDIIQATVQQ NFDTETDTLY DEILQHSSLC KTYASFYEYK CESLNIVHKY ENSP00000309501/1-1742 IDIIQATIQQ NFDTETDTLY DEILQHSSLC KTYASFYEYK CESLNIVHNY ENSBTAP00000001952/1-1623 IDIIQATVQQ NFDTETDTLY DEILQHSSLC KTYASFYEYK CESLNIVHKY bmy_17430T0/1-1601 IDIIQATVQQ NFDTETDTLY DEILQHSSLC KTYASFYEYK CESLNIVXKY BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000015752/1-318 ILPSKTGHIN PLVIYGGPCT GKTLLLAEVA KK-------- ---------- ENSP00000309501/1-1742 ILPSKAGHIN PLIIYGGPCT GKTLLLAEVA KKAYGWLHED TGPESDPVVI ENSBTAP00000001952/1-1623 ILPSKTGHIN PLIVYGGPCT GKTLLLAEVA KKAYGWLHED TGPESDPVVV bmy_17430T0/1-1601 ILPSKTGHIN PLIIYGGPCX GKTFLLAEVA KKAYGWLHED TGPESDPVIV BACU007652/1-1284 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000015752/1-318 ---------- ---------- ---------- -VKAYS---- ---------- ENSP00000309501/1-1742 VRFLGTTDMS SDLRTLLLSV CEQLAVNYRC LVQSYPKKIH DLCDLFINLL ENSBTAP00000001952/1-1623 VRFLGTTDLS TDLKSLLLSV CEQLAVNYRC LVQSYPKKIH DLRDLFINLL bmy_17430T0/1-1601 VRFLGTTDMS TDLRTLLLSV CEQLAVNYRC LVQSYPKKIH DLRDLFINLL BACU007652/1-1284 --------MS TDLRTLLLSV CEQLAVNYRC LVQSYPKKIH DLRDLFINLL 501 550 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 NESSLQRPLV IIFDALEQLS ENDDARKLWW LPAHLPRFVR IVLSTLPNKH ENSBTAP00000001952/1-1623 NESSLQRPLV VIFDALEQLS ESDEARKLWW LPVHLPRFVR IVLSTLPNKH bmy_17430T0/1-1601 NESSLQRPLV VIFDALEQLS ESHEARKLWW LPVHLPRFVR IVLSTLPNKH BACU007652/1-1284 NESSLQRPLV VIFDALEQLS ESHEARKLWW LPVHLPRFVR IVLSTLPNKH 551 600 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 GILQKLRCLI HEEDNYIELI PRDRKMCSQV LKHQLLRVKR KVTSGQQIYV ENSBTAP00000001952/1-1623 GILQKLRCLI HEEDNYIELI PRDRKMCSQV LKHQLLRVKR KVTSGQQIYV bmy_17430T0/1-1601 GILQKLRCLI HEEDNYIELI PRDRKMCSQV LKHQLLRVKR KVTSGQQIYV BACU007652/1-1284 GILQKLRCLI HEEDNYIELI PRDRKMCSQV LKHQLLRVKR KVTSGQQIYV 601 650 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 NNALSKCTLP MFVNLTFREV RHWRSHKDVD ESSLSVTVHE SIEQLFWSLE ENSBTAP00000001952/1-1623 NNAFSKCTLP MFVNLTFREV RHWRSHRDVD ESSLCVTVHE SIEQLFWSLE bmy_17430T0/1-1601 NNAFSKCTLP MFVNLTFREV RNWRSHRDVD ESSLCVTVHE SIEQLFCSLE BACU007652/1-1284 NNAFSKCTLP MFVNLTFREV RNWRSHRDVD ESSLCVTVHE SIEQLFCSLE 651 700 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 KKCGQKLVSR ALGYITMAKM GLSEMELEDV LALDNSVMSE LKENTRPSNP ENSBTAP00000001952/1-1623 RKCGQKLVSR ALGYITMAKM GLSEMELEDV LALDNSVMNE LNENTRPSNP bmy_17430T0/1-1601 RKCGQKLVSR ALGYITMAKM GLSEMELEDV LALDNSVMNE LNESARPSNP BACU007652/1-1284 RKCGQKLVSR ALGYITMAKM GLSEMELEDV LALDNSVMNE LNESARPSNP 701 750 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 LRVPYLYIAR LKEGLSGYLI ERHVKNVTLL VWANRHLQLI AQKLYLQDDN ENSBTAP00000001952/1-1623 LRVPYLYIAK LKEGLSGYLI ERHVKNVTLL VWANRHLQLI AQKLYLQDKS bmy_17430T0/1-1601 LRVPYLYIAR LKEGLSGYLI ERHVKNITLL VWANRHLQLI AQKLYLQDNS BACU007652/1-1284 LRVPYLYIAR LKEGLSGYLI ERHVKNITLL VWANRHLQLI AQKLYLQDNS 751 800 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 DLREMHTILA DYFLGVWSGG RRKAFCLEDP YLNGCLDLEN RSLLEEEKHF ENSBTAP00000001952/1-1623 DLHEMHTILA DYFLGVWSGG RRKAFCLEDP YLNGCLDLES RSLLEEERHF bmy_17430T0/1-1601 DLHEMHTILA DYFLGVWSGG RRKAFCLEDP YLNGCLDLDS RSLLEEEKHF BACU007652/1-1284 DLHEMHTILA DYFLGVWSGG RRKAFCLEDP YLNGCLDLDS RSLLEEEKHF 801 850 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 MEQASFDRQA PDQPWVFQCN PLEPDIFFVN HRKMSELLYH LTRCGKTDDL ENSBTAP00000001952/1-1623 MEQASFDRQA PDQPWVFQCN PLEPDIFFVN HRKMCELLYH LTRCGKTDDL bmy_17430T0/1-1601 MEQASFDRQA PDQPWVFQCN PLEPDIFFVN HRKMCELLHH LTRCGKTDDL BACU007652/1-1284 MEQASFDRQA PDQPWVFQCN PLEPDIFFVN HRKMCELLHH LTRCGKTDDL 851 900 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 LYGIIMNFSW LYTMIKIGQF DKVLSDIELA YNYSQEKELK FLANTLRSIK ENSBTAP00000001952/1-1623 LYGIIMNFSW LYTMIKIGQF DKVLADIELA YIYSQEKELK FLASTLRSIK bmy_17430T0/1-1601 LYGIIMNFSW LYTMIKIGQF DKVLLDIELA YNYSQEKELK YLASTLRSIK BACU007652/1-1284 LYGIIMNFSW LYTMIKIGQF DKVLLDIELA YNYSQEKELK FLASTLRSIK 901 950 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 NKVTAFPGSL SAELQQRLLP VVSSLPKLRH LLLECDKDGP KYCSIVPLHS ENSBTAP00000001952/1-1623 TKVVAFPGSL SAELQQRLLP VVSSLPKLRH LLLECDKDGP KYCSIVPLHS bmy_17430T0/1-1601 TKVVAFPGSL SAELQQRLLP VVSSLPKLRH LLLECDKDGP KYCSIVPLHS BACU007652/1-1284 TKVVAFPGSL SAELQQRLLP VVSSLPKLRH LLLECDKDGP KYCSIVPLHS 951 1000 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 SMDVTYSPER LPLSSSHLHV TEILPTCNPS TVLTALENGS ISTWDVETRQ ENSBTAP00000001952/1-1623 SMDVTYSPER LPLSSSHLHV TEILPTCNPS TVLTALENGS ISTWDVETRQ bmy_17430T0/1-1601 SMDVTYSPER LPLSSSHLHV TEILPTCNPS TVLTALENGS ISTWDVETRQ BACU007652/1-1284 SMDVTYSPER LPLSSSHLHV TEILPTCNPS TVLTALENGS ISTWDVETRQ 1001 1050 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 LLRQITTAQS VILGMKLTSD EKYLVVATTN NTLLIYDNVN SCLLSEVEIK ENSBTAP00000001952/1-1623 LLRQITTAQS VILGMKLSND EKYLVVATTN NTLLVYDNVN SCLLSEVEIK bmy_17430T0/1-1601 LLRQITTAQS VILGMKLTSD EKYLVVATTN NTLLVYDNVN SCLLSEVEIK BACU007652/1-1284 LLRQITTAQS VILGMKLTSD EKYLVVATTN NTLLVYDNVN SCLLSEVEIK 1051 1100 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 GTKHGSSATY INGFTLSANH ALAWLEASKD VTVIDLLYGW PLYQFHCWYE ENSBTAP00000001952/1-1623 GTKHGSGSTY INGFTLSVKH ALAWLEASKD VTVIDLLYGW PLYQFHCWYE bmy_17430T0/1-1601 GTKHGSGSTY INGFTLSVKH ALAWLEASKD VTVIDLLYGW PLYQFHCWYE BACU007652/1-1284 GTKHGSGSTY INGFTLSVKH ALAWLEASKD VTVIDLLYGW PLYQFHCWYE 1101 1150 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 VTCVQCSLDG LYAFCGQYLN TTTIFHLGSG EKLCTVTSEF SGGFVKFLLI ENSBTAP00000001952/1-1623 VTCVQCSLDG VYAFCGQYLN TTTIFHLGSG EKLCTVTSEF SGGFVKFLLI bmy_17430T0/1-1601 VTCVQCSLDG VYAFCGQYLN TTTIFHLGSG EKLCTVTSEF SGGFVKFLLI BACU007652/1-1284 VTCVQCSLDG VYAFCGQYLN TTTIFHLGSG EKLCTVTSEF SGGFVKFLLI 1151 1200 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 LDTAQEMVMV DSEGSLSVWN TEDISSPQLT DDFDCRREDS EVVSIELSED ENSBTAP00000001952/1-1623 LDTAQEMVMV DSEGSLSVWN TEDISNPQLT DDFDCRREDS EVVSIELSED bmy_17430T0/1-1601 LDTAQEMVMV DSEGSLSVWN TEDISNPQLT DDFDCRREDS EVVSVELSED BACU007652/1-1284 LDTAQEMVMV DSEGSLSVWN TEDISNPQLT DDFDCRREDS EVVSVELSED 1201 1250 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 QSAVLICKAL SIELLDTGLW KVAEKFRAKH NERFISAVLS KNGDCIIATM ENSBTAP00000001952/1-1623 QSAVLICKAL SIELLDTGLW KVAEKFRAKH NERFISAVLS KNGDCIIATM bmy_17430T0/1-1601 QSAVLICKAL SIELLDTGMW KVAEKFRAKH NERFISAVLS KNGDCIIATM BACU007652/1-1284 QSAVLICKAL SIELLDTGMW KVAEKFRAKH NERFISAVLS KNGDCIIATM 1251 1300 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 ENTSAVFFWR RDTGQCMASL QEISGSIVKL VKSSHHNMLL SLSTSGVLSI ENSBTAP00000001952/1-1623 ENTSAVFFWR RDTGQCMASL QEISGTIVKL VKSSHHNMLL SLSTSGVLSI bmy_17430T0/1-1601 ENTSAVFFWR RDTGQCMASL QEISGTIVKL VKSSHHNMLL SLSTSGVLSI BACU007652/1-1284 ENTSAVFFWR RDTGQCMASL QEISGTIVKL VKSSHHNMLL SLSTSGVLSI 1301 1350 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 WDIDIITAMS NIDKTGKPIQ SLLLPARGEI IYSLDGSDCV HKWNFSSGFI ENSBTAP00000001952/1-1623 WDIDIITAMS NIDKTGKPIQ SLVLPARGEI IYSLDGSDCV HKWNFSSGFL bmy_17430T0/1-1601 WDIDIITAMS NIDKTGKPIQ SLVLPARGEI IYSLDGSDCV HKWNFSSGFL BACU007652/1-1284 WDIDIITAMS NIDKTGKPIQ SLVLPARGEI IYSLDGSDCV HKWNFSSGFL 1351 1400 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 EAVFKHEGIV EHCVLTSTGD IMVTSDDKSS QYVWHTSSGE NLFRINGQRI ENSBTAP00000001952/1-1623 EAVFKHEGTV EHCVLTSSGD VMVTSDDKSS QYVWHTSSGE NLFRINGQRI bmy_17430T0/1-1601 EAVFKHEGIV EHCVLTSSGD VMVTSDDKSS QYVWHTSSGE NLFRINGQRI BACU007652/1-1284 EAVFKHEGIV EHCVLTSSGD VMVTSDDKSS QYVWHTSSGE NLFRINGQRI 1401 1450 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 SQLLITHNDQ FVVSLCEENA SRVWRLATGH RVCNILTTLQ NAFITSANTF ENSBTAP00000001952/1-1623 SQLLITHNDQ FVVSLCEENA SRVWRLATGH RVCNILTSLQ NAFITSANTF bmy_17430T0/1-1601 SQLLITHNDQ FVVSLCEENA SRVWRLATGH RVCNILTTLQ NAFITSANTF BACU007652/1-1284 SQLLITHNDQ FVVSLCEENA SRVWRLATGH RVCNILTTLQ NAFITSANTF 1451 1500 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 VVGMTKSKVL AVSLWTGSIT KKFCCEDGTT IVNFKLIPDC PDIIVFITSA ENSBTAP00000001952/1-1623 VVGMTKSKVL AVSLWTGSIT KKFCCEDGTT IVNFKLIPDC PDIIVFITSA bmy_17430T0/1-1601 VVGVTKSKVL AVSLWTGSIT KKFCCEDGTT IVNFKLIPDC PDIIVFITSA BACU007652/1-1284 VVGMTKSKVL AVSLWTGSIT KKFCCEDGTT IVNFKLIPDC PDIIVFITSA 1501 1550 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 ETVNIWSLTD EVICRRVQLP NNFLKNLEDF EISPNGKLGI IARGDENINV ENSBTAP00000001952/1-1623 ETVNIWSLTE EVICRRVQLP NNFLKNLEDF EISPNGKLGI ISRGDENINV bmy_17430T0/1-1601 ETVNIWSLTD EVICRRVQLP NNFLKNLEDF EISPNGKLGI ISRGDENINV BACU007652/1-1284 EMVNIWSLTD EVICRRVQLP NNFLKNLQDF EISPNGKLGI ISRGDENINV 1551 1600 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 LDLYSGKLRV VHASGIIWRQ RLSRDGRYLV YICFRNGEEE DENGAIFSLI ENSBTAP00000001952/1-1623 LDLHSGKLRV VHASGVIWRQ RLSRDGRYLV YICFRNGEEE DENGAISSLI bmy_17430T0/1-1601 LDLHSGKLRV VHASGVIWRH RLSRDGRYLV YICFRNGEEE DENGAISSLI BACU007652/1-1284 LDLHSGKLRV VHTSGVIWRH RLSRDGRYLV YICFRNGEEE DENGAISSLI 1601 1650 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 VMRLADGKNI GACSLYKTPT FLALSQRHLN IIVGFDDGSI GIYTVVDRVD ENSBTAP00000001952/1-1623 VMRLADGKNI GACSLYKTPT FLALSQRHLN IIVGFDDGSI GIYTVVDRVD bmy_17430T0/1-1601 VMRLADGKNI GACSLYKTPT FLALSQRHLN IIVGFEDGSI GIYTVVDRVD BACU007652/1-1284 VMRLADGKNI GACSLYKTPT FLALSQRHLN IIVGFEDGSI GIYTVVDRVD 1651 1700 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- ---------- ENSP00000309501/1-1742 AALKIKIATS NSRQIFNNAT HTSRPKCNSY CFKISVDCLW RESTEVFARD ENSBTAP00000001952/1-1623 AALKIKIATS NSRQIFNNAT QTSRPKCNSY CFKVSVDCLW RESTEVFARD bmy_17430T0/1-1601 AALKIKIATS NSRQIFNNAT QTSRPKCHSY CFKVSVDCLW RESTEVFARD BACU007652/1-1284 AALKIKIATS NSRQIFNNAT QTSRPKCHRY CFKVSVDCLW RESTEVFARD 1701 1750 ENSTTRP00000015752/1-318 ---------- ---------- ---------- ---------- -- ENSP00000309501/1-1742 SPITVSDSTE SNEATPSKKH NSCYERVCSA LEARGHSYAP DN ENSBTAP00000001952/1-1623 SPITVSDSSE PNESTPSKKH NSCYERVCSA LESRGHSYAP DN bmy_17430T0/1-1601 SPITVSDSME PNEATPSKKH NSCYDRVCSA LESRGHSYAP DN BACU007652/1-1284 SPITVSDSME PNEATPSKKH NSCYDRVCSA LESRGHSYAP DN