KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:06 2014 Check: 00 .. Name: BACU013748/1-536 Len: 546 Check: 6096 Weight: 1.00 Name: ENSP00000373487/1-430 Len: 546 Check: 8874 Weight: 1.00 Name: ENSTTRP00000012309/1-428 Len: 546 Check: 4886 Weight: 1.00 Name: bmy_04664T0/1-397 Len: 546 Check: 5310 Weight: 1.00 Name: ENSBTAP00000001988/1-429 Len: 546 Check: 9968 Weight: 1.00 // 1 50 BACU013748/1-536 MSFSAQSPFS -NYRSLGSVQ SPGHRVRPVS SAASVYAGAR GSGSRIFVSH ENSP00000373487/1-430 MSFTTRSTFS TNYRSLGSVQ APSYGARPVS SAASVYAGAG GSGSRISVSR ENSTTRP00000012309/1-428 MSFSAQSTFS -SYRSLGSAQ SPGHGVRPVS SAASVYAGAG GSGSRISVSR bmy_04664T0/1-397 MSFSAQSTFS -SYRSAGSVQ SPGHRVRPVS SAASVYAGAG GSGSRISVSR ENSBTAP00000001988/1-429 MSFSTQSTFS -NYRSLGSVQ SSGHRVRPVS SAASVYAGAG GSGSRISVSR 51 100 BACU013748/1-536 STSVRSGWGS RNLGAGMAGG LVGVGGIQGE KETVQELNDH LASYLERVRS ENSP00000373487/1-430 STSFRGGMGS GGLATGIAGG LAGMGGIQNE KETMQSLNDR LASYLDRVRS ENSTTRP00000012309/1-428 STSVRGGWGS GNLGAGMTGD LVGVGGIQGE KETMQ-LNDR LASYLENVRS bmy_04664T0/1-397 STSVRGGWGS GNLGTGMAGG LVGVGGIQGE KETMQDLNDR LASYLERVRS ENSBTAP00000001988/1-429 TTSVRGGWGS GNLGAGMAGG LVGVGGIQGE KETMQDLNDR LASYLEKVRS 101 150 BACU013748/1-536 LEADNRRLEC KIWEHLEKKR PQVRDWGHYL KTIEDLRAQI FASSV----- ENSP00000373487/1-430 LETENRRLES KIREHLEKKG PQVRDWSHYF KIIEDLRAQI FANTVDNARI ENSTTRP00000012309/1-428 LEADNRRLES KIREHLEKKG PQVRDWGHYL KTIEDLRLQI FASSVDNARI bmy_04664T0/1-397 LEADNRRLES KIREHLEKKG PQVRDWGHYL KTIEDLRAQI FASSVDNARI ENSBTAP00000001988/1-429 LEADNRRLES KIREHLEKKG PQVRDWAHYL KIIEDLRAQI FANSVDNARI 151 200 BACU013748/1-536 ----DNACFA ADDFRVKYEM ELATCQSVES DIHRLHKVTD DTSVTWLQLE ENSP00000373487/1-430 VLQIDNARLA ADDFRVKYET ELAMRQSVEN DIHGLRKVID DTNITRLQLE ENSTTRP00000012309/1-428 VLQIDNARLA ADDFRVKYET ELAMRQSVEN DIHGLRKVID DTNVTRLQLE bmy_04664T0/1-397 VLQIDNARLA ADDFRVKYET ELAMRQSVES DIHGLRK--- ---------- ENSBTAP00000001988/1-429 VLQIDNARLA ADDFRVKYET ELAMRQSVES DIHGLRKVID DTNVTRLQLE 201 250 BACU013748/1-536 TETKALKEGL LFMKKNHEEE VKGLQNQTAN SGLTVELDTP KAQDLSKIMA ENSP00000373487/1-430 TEIEALKEEL LFMKKNHEEE VKGLQAQIAS SGLTVEVDAP KSQDLAKIMA ENSTTRP00000012309/1-428 TEIEALKEEL LFMKKNHEEE VKGLQNQIAN SGLTVELDAP KAQDLGKIMA bmy_04664T0/1-397 ---------- ---------E VKGLQNQIAN SGLTVELDAP KAQDLSKIMA ENSBTAP00000001988/1-429 TEIEALKEEL LFMKKNHEEE VKGLQNQIAN SGLTVELDAP KPQDLSKIMA 251 300 BACU013748/1-536 DIQAQYDELA QKNQEELDKY WSQQTEESTT VVTSQTAEIG AAQMTLTELR ENSP00000373487/1-430 DIRAQYDELA RKNREELDKY WSQQIEESTT VVTTQSAEVG AAETTLTELR ENSTTRP00000012309/1-428 DIRAQYDELA QKNREELDKY WSQQIEESTT VVTSKTAEIG AAEMTLTELR bmy_04664T0/1-397 DIRAQYDELA RKNREELDKY WSQQIEESAT VVTSQTAEIG AAEMTLTELR ENSBTAP00000001988/1-429 DIRAQYDELA QKNREELDKY WSQQIEESTT VVTSQTAEIG AAEMTLTELR 301 350 BACU013748/1-536 RTVQSLEIDL DSMRNLKASL ENSLREVEAR YAMQMEQLNG VLLHLESELA ENSP00000373487/1-430 RTVQSLEIDL DSMRNLKASL ENSLREVEAR YALQMEQLNG ILLHLESELA ENSTTRP00000012309/1-428 RTLQSLEIDL DSMRNLKASL ENSLREVEAR YAMQMEQLNG VLLHLESELA bmy_04664T0/1-397 RTVQSLEIDL DSMRNLKASL ENSLREVEAR YAMQMEQLNG VLLHLESELA ENSBTAP00000001988/1-429 RTVQSLEIDL DSMRNLKASL ENSLREVEAR YAMQMEQLNG VLLHLESELA 351 400 BACU013748/1-536 QTRAEGQRQT QEPAVVLTAL PGAEGLDGLS PESPGLAAIN ATVEEDILLS ENSP00000373487/1-430 QTRAEGQRQA QEYEALLN-- ---------- --------IK VKLEAEI--- ENSTTRP00000012309/1-428 ETRAEGQRQT QEYEALLN-- ---------- --------IK VKLEAEI--- bmy_04664T0/1-397 QTRAEGQRQT QEYEALLN-- ---------- --------IK VKLEAEI--- ENSBTAP00000001988/1-429 QTRAEGQRQT QEYEALLN-- ---------- --------VK VKLEAEI--- 401 450 BACU013748/1-536 VAYSCHGIPT IEWKYTSNWG VQKIVEWKPG TQANISQSHK DRVCTFDNGS ENSP00000373487/1-430 ---------- ---------- ---------A TYRRLLEDGE D--------- ENSTTRP00000012309/1-428 ---------- ---------- ---------N TYRRLLEDGE D--------- bmy_04664T0/1-397 ---------- ---------- ---------N TYRRLLEDGE D--------- ENSBTAP00000001988/1-429 ---------- ---------- ---------N TYRRLLEDGE D--------- 451 500 BACU013748/1-536 IQLFSVGVRD SGYYVITVTE RLGSSQFGTI VLHVSEILYE DLHFVAVFLA ENSP00000373487/1-430 ---FNLG--- ---------D ALDSSNSMQT IQKTTTRRIV D--------- ENSTTRP00000012309/1-428 ---FSLA--- ---------D AVDSCNSMQT IQKTTTLKFV D--------- bmy_04664T0/1-397 ---FSLG--- ---------D ALDNSNSMQT IQKTTTLRLV D--------- ENSBTAP00000001988/1-429 ---FSLG--- ---------D ALDSSNSRQT IQKTTTLRLV D--------- 501 550 BACU013748/1-536 LLAAVAAVLI SLMWVCNKCA YKFQRKRRHK LKESTTEEIE LQDVEC ENSP00000373487/1-430 ---------- ---------- --------GK VVSETNDTKV LRH--- ENSTTRP00000012309/1-428 ---------- ---------- --------GK VVSETSDTKV LRH--- bmy_04664T0/1-397 ---------- ---------- --------GK VVSETSDTKV LRH--- ENSBTAP00000001988/1-429 ---------- ---------- --------GK VVSETSDTKV LRH---