KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:07 2014 Check: 00 .. Name: ENSP00000430494/1-140 Len: 142 Check: 9356 Weight: 1.00 Name: BACU009375/1-115 Len: 142 Check: 3696 Weight: 1.00 Name: ENSBTAP00000001993/1-111 Len: 142 Check: 8789 Weight: 1.00 Name: bmy_11953T0/1-111 Len: 142 Check: 8899 Weight: 1.00 Name: ENSTTRP00000006953/1-111 Len: 142 Check: 9095 Weight: 1.00 // 1 50 ENSP00000430494/1-140 MAGKQAVSAS GKWLDGIRKW YYNAAGFNKL GLMRDDTIYE DEDVKEAIRR BACU009375/1-115 MVSRPAVAAS SKWLEGIRKW YYNAAGFNKL GLMRDDTVYE NDDVKEAIRR ENSBTAP00000001993/1-111 MAGRPAVSAS SRWLEGIRKW YYNAAGFNKL GLMRDDTIHE NDDVKEAIRR bmy_11953T0/1-111 MASRPAVAAS SKWLEGIRKW YYNAAGFNKL GLMRDDTIYE NEDVKEAIRR ENSTTRP00000006953/1-111 MASRPAVAAS SKWLEGIRKW YYNAAGFNKL GLMRDDTIYE NDDVKEAIKR 51 100 ENSP00000430494/1-140 LPENLYNDRM FRIKRALDLN LKHQILPKEQ WTKYEEVFAV PALHSASYLD BACU009375/1-115 LPENLYNDRV FRIKRALDLT MRQQILPKEQ WTKYEE---- DTFYLEPYLK ENSBTAP00000001993/1-111 LPENLYNDRV FRIKRALDLS MRQQILPKEQ WTKYEE---- DKSYLEPYLK bmy_11953T0/1-111 LPENLYNDRV FRIKRALDLT MRQQILPKEQ WTKYEE---- DKFYLEPYLK ENSTTRP00000006953/1-111 LPENVYNERV FRIKRALDLT MTQQILPKEQ WTKYEE---- DKFYLEPYLK 101 150 ENSP00000430494/1-140 EKISPLSVPP DPKKSFCEAN SHPLNCIETR QRKISTLNRI -- BACU009375/1-115 EVIW------ ---------- -------ERK EREDGQRNNH VV ENSBTAP00000001993/1-111 EVIR------ ---------- -------ERK EREEWAKK-- -- bmy_11953T0/1-111 EVIR------ ---------- -------ERK EREEWAKK-- -- ENSTTRP00000006953/1-111 EVIR------ ---------- -------ERK EREEWAKK-- --