KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:09 2014 Check: 00 .. Name: ENSP00000398880/1-1490 Len: 1494 Check: 8396 Weight: 1.00 Name: ENSBTAP00000002005/1-1492 Len: 1494 Check: 7027 Weight: 1.00 Name: ENSTTRP00000008008/1-1436 Len: 1494 Check: 4164 Weight: 1.00 Name: bmy_12736T0/1-1490 Len: 1494 Check: 3335 Weight: 1.00 Name: BACU007008/1-1490 Len: 1494 Check: 3558 Weight: 1.00 // 1 50 ENSP00000398880/1-1490 MPNSERHGGK KDGSGGASGT LQPSSGGGSS NSRERHRLVS KHKRHKSKHS ENSBTAP00000002005/1-1492 MPNPERHGGK KDGSGGASGT LQPSSGGGSS NSRERHRLGS KHKRHKSKHS ENSTTRP00000008008/1-1436 ---------- ---------- ---------- ---------- ---------- bmy_12736T0/1-1490 MPNPERHGGK KDGSGGASGT LQPSSGGGSS NSRERHRLVS KHKRHRSKHS BACU007008/1-1490 MPNPERHGGK KDGSGGASGT LQPSSGGGSS NSRERHRLVS KHKRHRSKHS 51 100 ENSP00000398880/1-1490 KDMGLVTPEA ASLGTVIKPL VEYDDISSDS DTFSDDMAFK LDRRENDERR ENSBTAP00000002005/1-1492 KDMGLVTPEA APLGTVIKPL VEYDDISSDS DTFSDDLAFK VDRRENDERR ENSTTRP00000008008/1-1436 ----LVTPEA APLGTIIKPL VEYDDISSDS DTFSDDMAFK LDRRENDERR bmy_12736T0/1-1490 KDMGLVTPEA APLGTIIKPL VEYDDISSDS DTFSDDMAFK LDRRENDERR BACU007008/1-1490 KDMGLVTPEA APLGTIIKPL VEYDDISSDS DTFSDDMAFK LDRRENDERR 101 150 ENSP00000398880/1-1490 GSDRSDRLHK HRHHQHRRSR DLLKAKQTEK EKSQEVSSKS GSMKDRISGS ENSBTAP00000002005/1-1492 GTDRSDRLHK HRHHQHRRTR DLLKTKQTEK EKNLEASSKS GSTKDRISGS ENSTTRP00000008008/1-1436 GTDRSDRLHK HRHHQHRRSR DLLKTKQSEK EKNLEASSKS GSMKDRISGS bmy_12736T0/1-1490 GTDRSDRLHK HRHHQHRRSR DLLKTKQSEK EKNLEASSKS GSMKDRISGS BACU007008/1-1490 GTDRSDRLHK HRHHQHRRSR DLLKTKQSEK EKNLEASSKS GSMKDRISGS 151 200 ENSP00000398880/1-1490 SKRSNEETDD YGKAQVAK-S SSKESRSSKL HKEKTRKERE LKSGHKDRSK ENSBTAP00000002005/1-1492 SKRSNEENDD HGKAQISK-S SNKESRSSKL HKEKTRKERE LKSGHKDRSK ENSTTRP00000008008/1-1436 SKRSNEENDD HGKTQVSKSS SNKESRSSKL HKEKTRKERE LKSGHKDRSK bmy_12736T0/1-1490 SKRSNEENDD HGKTQISKSS SNKESRSSKL HKEKTRKERE LKSGHKDRSK BACU007008/1-1490 SKRSNEENDD HGKTQISKSS SNKESRSSKL HKEKTRKERE LKSGHKDRSK 201 250 ENSP00000398880/1-1490 SHRKRETPKS YKTVDSPKRR SRSPHRKWSD SSKQDDSPSG ASYGQDYDLS ENSBTAP00000002005/1-1492 SHRKRETPKS YKTVDSPKRR SRSPHRKWSD SPKQDDSPSG ASYGQDYDLS ENSTTRP00000008008/1-1436 SHRKRETPKS YKTVDSPKRR SRSPHRKWSD SPKQDDSPSG ASYGQDYDLS bmy_12736T0/1-1490 SHRKRETPKS YKTVDSPKRR SRSPHRKWSD SPKQDDSPSG ASYGQDYDLS BACU007008/1-1490 SHRKRETPKS YKTVDSPKRR SRSPHRKWSD SPKQDDSPSG ASYGQDYDLS 251 300 ENSP00000398880/1-1490 PSRSHTSSNY DSYKKSPGST SRRQSVSPPY KEPSAYQSST RSPSPYSRRQ ENSBTAP00000002005/1-1492 PPRSHTSSNY DSYKKSPGST SRRQSISPPY KEPSAYQSST RSPSPYSRRQ ENSTTRP00000008008/1-1436 PPRSHTSSNY DSYKKSPGST SRRQSISPPY KEPSAYQSST RSPSPYSRRQ bmy_12736T0/1-1490 PPRSHTSSNY DSYKKSPGST SRRQSISPPY KEPSAYQSSA RSPSPYSRRQ BACU007008/1-1490 PPRSHTSSNY DSYKKSPGST SRRQSISPPY KEPSAYQSSA RSPSPYSRRQ 301 350 ENSP00000398880/1-1490 RSVSPYSRRR SSSYERSGSY SGRSPSPYGR RRSSSPFLSK RSLSRSPLPS ENSBTAP00000002005/1-1492 RSVSPYSRRR SSSYERSGSY SGRSPSPYGR RRSSSPFLSK RSLSRSPLPS ENSTTRP00000008008/1-1436 RSVSPYSRRR SSSYERSGSY SGRSPSPYGR RRSSSPFLSK RSLSRSPLPS bmy_12736T0/1-1490 RSVSPYSRRR SSSYERSGSY SGRSPSPYGR RRSSSPFLSK RSLSRSPLPS BACU007008/1-1490 RSVSPYSRRR SSSYERSGSY SGRSPSPYGR RRSSSPFLSK RSLSRSPLPS 351 400 ENSP00000398880/1-1490 RKSMKSRSRS PAYSRHSSSH SKKKRSSSRS RHSSISPVRL PLNSSLGAEL ENSBTAP00000002005/1-1492 RKSMKSRSRS PAYSRHSSSH SKKKRSGSRS RHSSISPVRL PLNSSLGAEL ENSTTRP00000008008/1-1436 RKSMKSRSRS PAYSRHSSSH SKKKRSGSRS RHSSISPVRL PLNSSLGAEL bmy_12736T0/1-1490 RKSMKSRSRS PAYSRHSTSH SKKKRSGSRS RHSSISPVRL PLNSSLGAEL BACU007008/1-1490 RKSMKSRSRS PAYSRHSTSH SKKKRSGSRS RHSSISPVRL PLNSSLGAEL 401 450 ENSP00000398880/1-1490 SRKKKERAAA AAAAKMDGKE SKGSPVFLPR KENSSVEAKD SGLESKKLPR ENSBTAP00000002005/1-1492 SRKKKERAAA AAAAKMDGKE SKGSPIFLPK KENSSVEAKD SGLEPKKLPR ENSTTRP00000008008/1-1436 SRKKKER-AA AAAAKMDGKE SKGSPIFLPR KENSSVEAKD SGLESKKLPR bmy_12736T0/1-1490 SRKKKER-AA AAAAKMDGKE SKGSPIFLPR KENSSVEAKD SGLESKKLPR BACU007008/1-1490 SRKKKER-AA AAAAKMDGKE SKGSPIFLPR KENSSVEAKD SGLESKKLPR 451 500 ENSP00000398880/1-1490 SVKLEKSAPD TELVNVTHLN TEVKNSSDTG KVKLDENSEK H-LVKDLKAQ ENSBTAP00000002005/1-1492 GVKLEKSAPD TELVNVTHLN TEVKNSLDTG KVKLDENSEK HPVLKDTKVQ ENSTTRP00000008008/1-1436 GVKLEKSAPD TELVNVTHLN TEVKNSLDTG KIKLDENSEK HPVLKDSKGQ bmy_12736T0/1-1490 GVKLEKSAPD TELVNVTHLN TEVKNSLDTG KIKLDENSEK HPVLKDSKGQ BACU007008/1-1490 GVKLEKSAPD TELVNVTHLN TEVKSSLDTG KIKLDENSEK HPVLKDSKGQ 501 550 ENSP00000398880/1-1490 GTRDSKPIAL KEEIVTPKET ETSEKETPPP LPTIASPPPP LPTTTPPPQT ENSBTAP00000002005/1-1492 GTKDSKPVAL KEEIVTPKET ETSEKETLPP LPTVTSP-PP LPTTTPPPQT ENSTTRP00000008008/1-1436 GTRDSKPVAL KEEIATPKET ETSEKETLPP LPTVTSP-PP LPTTTPPPQT bmy_12736T0/1-1490 GTRDSKPVAL KEEIATPKET ETSEKETLPP LPTVTSP-PP LPTTTPPPQT BACU007008/1-1490 GTRDSKPVAL KEEIATPKET ETSEKETLPP LPTVTSP-PP LPTTTPPPQT 551 600 ENSP00000398880/1-1490 PPLPPLPPIP ALPQQPPLPP SQPAFSQVPA SSTSTLPPST HSKTSAVSSQ ENSBTAP00000002005/1-1492 PPLPPLPPLP AIPQQPPLPP PQPTFSQVLS SSTSTLPPSV HPRTSTLSSQ ENSTTRP00000008008/1-1436 PPLPPLPPLP ALPQQPPLPP PQPTFSQVLS SSTSTLPPSI HPRTSTLSSQ bmy_12736T0/1-1490 PPLPPLPPLP ALPQQPPLPP PQPAFSQVLS SSTSTLPPSI HPRTSTLSSQ BACU007008/1-1490 PPLPPLPPLP ALPQQPPLPP PQPAFSQVLS SSTSTLPPSI HPRTSTLSSQ 601 650 ENSP00000398880/1-1490 ANSQPPVQVS VKTQVSVTAA IPHLKTSTLP PLPLPPLLPG DDDMDSPKET ENSBTAP00000002005/1-1492 ANSQPSVQVS VKTQVSVTAA IPHLKTSTLP PLPLPPLLLG DDDMDSPKET ENSTTRP00000008008/1-1436 ANSQPPVQVS VKTQVSVTAA IPHLKTSTLP PLPLPPLLLG DDDMDSPKET bmy_12736T0/1-1490 ANSQPPVQVS VKTQVSVTAA IPHLKTSTLP PLPFPPLLLG DDDMDSPKET BACU007008/1-1490 ANSQPPVQVS VKTQVSVTAA IPHLKTSTLP PLPFPPLLLG DDDMDSPKET 651 700 ENSP00000398880/1-1490 LPSKPVKKEK EQRTRHLLTD LPLPPELPGG DLSPPDSPEP KAITPPQQPY ENSBTAP00000002005/1-1492 LPSKPVKKEK EQRPRHLLTD LPLPPELPGG DPSPPDSPEP KAITPPQQPY ENSTTRP00000008008/1-1436 LPSKPVKKEK EQRPRHLLTD LPLPPELPGG DPSPPDSPEP KAITPPQQPY bmy_12736T0/1-1490 LPSKPVKKEK EQRPRHLLTD LPLPPELPGG DPSPPDSPEP KAITPPQQPY BACU007008/1-1490 LPSKPVKKEK EQRPRHLLTD LPLPPELPGG DPSPPDSPEP KAITPPQQPY 701 750 ENSP00000398880/1-1490 KKRPKICCPR YGERRQTESD WGKRCVDKFD IIGIIGEGTY GQVYKAKDKD ENSBTAP00000002005/1-1492 KKRPKICCPR YGERRQTESD WGKRCVDKFD IIGIIGEGTY GQVYKAKDKD ENSTTRP00000008008/1-1436 KKRPKICCPR YGERRQTESD WGKRCVDKFD IIGIIGEGTY GQVYKAKDKD bmy_12736T0/1-1490 KKRPKICCPR YGERRQTESD WGKRCVDKFD IIGIIGEGTY GQVYKAKDKD BACU007008/1-1490 KKRPKICCPR YGERRQTESD WGKRCVDKFD IIGIIGEGTY GQVYKAKDKD 751 800 ENSP00000398880/1-1490 TGELVALKKV RLDNEKEGFP ITAIREIKIL RQLIHRSVVN MKEIVTDKQD ENSBTAP00000002005/1-1492 TGELVALKKV RLDNEKEGFP ITAIREIKIL RQLIHRSVVN MKEIVTDKQD ENSTTRP00000008008/1-1436 TGELVALKKV RLDNEKEGFP ITAIREIKIL RQLIHRSVVN MKEIVTDKQD bmy_12736T0/1-1490 TGELVALKKV RLDNEKEGFP ITAIREIKIL RQLIHRSVVN MKEIVTDKQD BACU007008/1-1490 TGELVALKKV RLDNEKEGFP ITAIREIKIL RQLIHRSVVN MKEIVTDKQD 801 850 ENSP00000398880/1-1490 ALDFKKDKGA FYLVFEYMDH DLMGLLESGL VHFSEDHIKS FMKQLMEGLE ENSBTAP00000002005/1-1492 ALDFKKDKGA FYLVFEYMDH DLMGLLESGL VHFSEDHIKS FMKQLMEGLD ENSTTRP00000008008/1-1436 ALDFKKDKGA FYLVFEYMDH DLMGLLESGL VHFSEDHIKS FMKQLMEGLD bmy_12736T0/1-1490 ALDFKKDKGA FYLVFEYMDH DLMGLLESGL VHFSEDHIKS FMKQLMEGLD BACU007008/1-1490 ALDFKKDKGA FYLVFEYMDH DLMGLLESGL VHFSEDHIKS FMKQLMEGLD 851 900 ENSP00000398880/1-1490 YCHKKNFLHR DIKCSNILLN NSGQIKLADF GLARLYNSEE SRPYTNKVIT ENSBTAP00000002005/1-1492 YCHKKNFLHR DIKCSNILLN NSGQIKLADF GLARLYNSEE SRPYTNKVIT ENSTTRP00000008008/1-1436 YCHKKNFLHR DIKCSNILLN NSGQIKLADF GLARLYNSEE SRPYTNKVIT bmy_12736T0/1-1490 YCHKKNFLHR DIKCSNILLN NSGQIKLADF GLARLYNSEE SRPYTNKVIT BACU007008/1-1490 YCHKKNFLHR DIKCSNILLN NSGQIKLADF GLARLYNSEE SRPYTNKVIT 901 950 ENSP00000398880/1-1490 LWYRPPELLL GEERYTPAID VWSCGCILGE LFTKKPIFQA NLELAQLELI ENSBTAP00000002005/1-1492 LWYRPPELLL GEERYTPAID VWSCGCILGE LFTKKPIFQA NLELAQLELI ENSTTRP00000008008/1-1436 LWYRPPELLL GEERYTPAID VWSCGCILGE LFTKKPIFQA NLELAQLELI bmy_12736T0/1-1490 LWYRPPELLL GEERYTPAID VWSCGCILGE LFTKKPIFQA NLELAQLELI BACU007008/1-1490 LWYRPPELLL GEERYTPAID VWSCGCILGE LFTKKPIFQA NLELAQLELI 951 1000 ENSP00000398880/1-1490 SRLCGSPCPA VWPDVIKLPY FNTMKPKKQY RRRLREEFS- -FIPSAALDL ENSBTAP00000002005/1-1492 SRLCGSPCPA VWPDVIKLPY FNTMKPKKQY RRRLREEFSF FFLPWGALDL ENSTTRP00000008008/1-1436 SRLCGSPCPA VWPDVIKLPY FNTMKPKKQY RRRLREEFS- -FIPSAALDL bmy_12736T0/1-1490 SRLCGSPCPA VWPDVIKLPY FNTMKPKKQY RRRLREEFS- -FIPSAALDL BACU007008/1-1490 SRLCGSPCPA VWPDVIKLPY FNTMKPKKQY RRRLREEFS- -FIPSAALDL 1001 1050 ENSP00000398880/1-1490 LDHMLTLDPS KRCTAEQTLQ SDFLKDVELS KMAPPDLPHW QDCHELWSKK ENSBTAP00000002005/1-1492 LDHMLTLDPS KRCTAEQTLQ SDFLKDVELS KMDPPDLPHW QDCHELWSKK ENSTTRP00000008008/1-1436 LDHMLTLDPS KRCTAEQTLQ SDFLKDVELS KMDPPDLPHW QDCHELWSKK bmy_12736T0/1-1490 LDHMLTLDPS KRCTAEQTLQ SDFLKDVELS KMDPPDLPHW QDCHELWSKK BACU007008/1-1490 LDHMLTLDPS KRCTAEQTLQ SDFLKDVELS KMDPPDLPHW QDCHELWSKK 1051 1100 ENSP00000398880/1-1490 RRRQRQSGVV VEEPPPSKTS RKETTSGTST EPVKNSSPAP PQPAPGKVES ENSBTAP00000002005/1-1492 RRRQRQSGVL VEEPPPPKAS RKETISGTSA EPVKNSSPAP PQPAPGKVEP ENSTTRP00000008008/1-1436 RRRQRQSGVL VEEPPPPKAS RKETISGTSA EPVKNSSPAP PQPAPGRVEP bmy_12736T0/1-1490 RRRQRQSGVL VEEPPPPKAS RKETISGTSA EPVKNSSPAP PQPAPGKVEP BACU007008/1-1490 RRRQRQSGVL VEEPPPPKAS RKETISGTSA EPVKNSSPAP PQPTPGKVEP 1101 1150 ENSP00000398880/1-1490 GAGDAIGLAD ITQQLNQSEL AVLLNLLQSQ TDLSIPQMAQ LLNIHSNPEM ENSBTAP00000002005/1-1492 GAGDAIGLGD ITQQLNQSEL AVLLNLLQSQ TDLSIPQMAQ LLNIHSNPEM ENSTTRP00000008008/1-1436 GAGDAIGLGD ITQQLNQSEL AVLLNLLQSQ TDLSIPQMAQ LLNIHSNPEI bmy_12736T0/1-1490 GAGDAIGLGD ITQQLNQSEL AVLLNLLQSQ TDLSIPQMAQ LLNIHSNPEI BACU007008/1-1490 GAGDAIGLGD ITQQLNQSEL AVLLNLLQSQ TDLSIPQMAQ LLNIHSNPEI 1151 1200 ENSP00000398880/1-1490 QQQLEALNQS ISALTEATSQ QQDSETMAPE ESLKEAPSAP VILPSAEQTT ENSBTAP00000002005/1-1492 QQQLEALNQS ISALTAATSQ QQDSEPTAPE ESLKEIAPAP AVQPSAEQTT ENSTTRP00000008008/1-1436 QQQLEALNQS ISALTEATSH QQDSEPTAPE ESLKEAPPAP VVQPSAEQTT bmy_12736T0/1-1490 QQQLEALNQS ISALTEATPQ QQDSEPTAPE ESLKEAPPAP VVQPSAEQTT BACU007008/1-1490 QQQLEALNQS ISALTEATPQ QQDSEPTAPE ESLKEAPPAP VVQPSAEQTT 1201 1250 ENSP00000398880/1-1490 LEASSTPADM QNILAVLLSQ LMKTQEPAGS LEENNSDKNS GPQGPRRTPT ENSBTAP00000002005/1-1492 PEASSTPADM QNMLAVLLSQ LMKTQEPAGN LEENNSDKNS GPQGPRRTPT ENSTTRP00000008008/1-1436 PEASSTPADM QNMLAVLLSQ LMKTQEPAGN LEENNSDKNS GPQGPRRTPT bmy_12736T0/1-1490 PEASSTPADM QNMLAVLLSQ LMKTQEPAGN LEENNSDKNS GPQGPRRTPT BACU007008/1-1490 PEASSTPADM QNMLAVLLSQ LMKTQEPAGN LEENNSDKNS GPQGPRRTPT 1251 1300 ENSP00000398880/1-1490 MPQEEAAACP PHILPPEKRP PEPPGPPPPP PPPPLVEGDL SSAPQELNPA ENSBTAP00000002005/1-1492 MPQEEAAACP PHILPPEKRP PEPPGPPPPP PPPPLVEGDL SSAPQELNPA ENSTTRP00000008008/1-1436 MPQEEAAACP PHILPPEKRP PEPPRPPPPP PPPPLVEGDL SSAPQELNPA bmy_12736T0/1-1490 MPQEEAAACP PHILPPEKRP PEPPGPPPPP PPPPLVEGDL SSAPQELNPA BACU007008/1-1490 MPQEEAAACP PHILPPEKRP PEPPGPPPPP PPPPLVEGDL SSAPQELNPA 1301 1350 ENSP00000398880/1-1490 VTAALLQLLS QPEAEPPGHL PHEHQALRPM EYSTRPRPNR TYGNTDGPET ENSBTAP00000002005/1-1492 VTAALLQLLS QPEAEPPGHL PHEHQALRSM DYSTRPHPNR TYGNTDGPET ENSTTRP00000008008/1-1436 VTAALLQLLS QPEAEPPGHL PHEHQALRPM DYSTRPHPNR TYGNNDGPET bmy_12736T0/1-1490 VTAALLQLLS QPEAEPPGHL PHEHQALRPM DYSTRPHPNR TYGNNDGPET BACU007008/1-1490 VTAALLQLLS QPEAEPPGHL PHEHQALRPM DYSTRPHPNR TYGNNDGPET 1351 1400 ENSP00000398880/1-1490 GFSAIDTDER NSGPALTESL VQTLVKNRTF SGSLSHLGES SSYQGTGSVQ ENSBTAP00000002005/1-1492 GFSATDTDER NSGPALTESL AQTLVKNRTF SGSVSHLGES SSYQGTGSVQ ENSTTRP00000008008/1-1436 GFSATDTDER HSGPALTESL AQTLVKNRTF SGSVSHLGES SSYQGTGSVQ bmy_12736T0/1-1490 GFSATDTDER HSGPALTESL AQTLVKNRTF SGSVSHLGES SSYQGTGSVQ BACU007008/1-1490 GFSATDTDER HSGPALTESL AQTLVKNRTF SGSVSHLGES SSYQGTGSVQ 1401 1450 ENSP00000398880/1-1490 FPGDQDLRFA RVPLALHPVV GQPFLKAEGS SNSVVHAETK LQNYGELGPG ENSBTAP00000002005/1-1492 FPGDQDLRFA RVPLALHSVV GQPFLKAEGS SNSVVHAETK LQNYGELGPG ENSTTRP00000008008/1-1436 FPGDQDLRFA RVPLALHSVV GQPFLKAEGS SNSVVHAETK LQNYGELGPG bmy_12736T0/1-1490 FPGDQDLRFA RVPLALHSVV GQPFLKAEGS SNSVVHAETK LQNYGELGPG BACU007008/1-1490 FPGDQDLRFA RVPLALHSVV GQPFLKAEGS SNSVVHAETK LQNYGELGPG 1451 1500 ENSP00000398880/1-1490 TTGASSSGAG LHWGGPTQSS AYGKLYRGPT RVPPRGGRGR GVPY ENSBTAP00000002005/1-1492 TTGTSSSGAS LNWGASAQSS AYGKVYRGPT RVPPRGGRGR GVPY ENSTTRP00000008008/1-1436 TTGASSSGAG LNWGAPAQSS AYGKLYRGPT RVPPRGGRGR GVPY bmy_12736T0/1-1490 TTGASSSGAG LNWGAPAQSS AYGKLYRGPT RVPPRGGRGR GVPY BACU007008/1-1490 TTGASSSGAG LNWGAPAQSS AYGKLYRGPT RVPPRGGRGR GVPY