KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:16:11 2014 Check: 00 ..
Name: ENSP00000371483/1-690 Len: 740 Check: 3529 Weight: 1.00
Name: bmy_02057T0/1-503 Len: 740 Check: 4314 Weight: 1.00
Name: ENSBTAP00000002023/1-693 Len: 740 Check: 6292 Weight: 1.00
Name: BACU002252/1-694 Len: 740 Check: 2151 Weight: 1.00
Name: ENSTTRP00000005760/1-637 Len: 740 Check: 6248 Weight: 1.00
//
1 50
ENSP00000371483/1-690 --------MA PWPELGDAQP NPDKYLEGAA GQQPTAPDKS KETNKTDNTE
bmy_02057T0/1-503 ---------- ---------- -------MLD GQ-------- ----------
ENSBTAP00000002023/1-693 --------MA PWPELENSQP TSEKYTVKAD GEQSAKPEKA KETEK-DDTG
BACU002252/1-694 MGSLSRRTMA PWPELENAQS NSDKYIEGAA GQQSTTPAKG KETGK-NDTD
ENSTTRP00000005760/1-637 --------MA PWPELENAQP NSDKYIEGVA GQQSTTPAKG KETGKTDDTD
51 100
ENSP00000371483/1-690 APVTKIELLP SYSTATLIDE PTEVDDPWNL PTLQDSGIKW SERDTKGKIL
bmy_02057T0/1-503 ---------- ------ILYS RTDRTSPHHG PIIP--GLLF S---------
ENSBTAP00000002023/1-693 TPITKIELVP SHSTATLIEE PTEVEDPWDL PELKDTGLKW SERDTKGKIL
BACU002252/1-694 TPVTKIELLP SYSTMALIEE PTAVEDPWNL PELQDMGIKW SERDTKGKIL
ENSTTRP00000005760/1-637 TPVTKIELLP SYSTMALIEE PTVVEDPWNL PELQDTGIKW SERDTKGKIL
101 150
ENSP00000371483/1-690 CFFQGIGRLI LLLGFLYFFV CSLDILSSAF QLVGGKMAGQ FFSNSSIMSN
bmy_02057T0/1-503 C--------- -LLAYLWLPP C-LHLWRDPW K--------- ----------
ENSBTAP00000002023/1-693 CVFQGIGKFI LLLVFLYFFV CSLDVLSSAF QLVGGKVAGK FFNNNSIMSN
BACU002252/1-694 CVFQGIGKFI LLLVFLYFFV CSLDVLSSAF QLVGGKVAGQ FFSNNSIMSN
ENSTTRP00000005760/1-637 CVFQGIGKFI LLLAFLYFFV CSLDVLSSAF QLVGGKVAGQ FFSNNSIMSN
151 200
ENSP00000371483/1-690 PLLGLVIGVL VTVLVQSSST STSIVVSMVS SSLLTVRAAI PIIMGANIGT
bmy_02057T0/1-503 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000002023/1-693 PVAGMVIGVL VTVLVQSSST STSIVVSMVA SSLLPVHAAI PIIMGANIGT
BACU002252/1-694 PVAGLVIGVL VTVLVQSSST SSSIVVSMVA SSLLNVQAAV PIIMGANIGT
ENSTTRP00000005760/1-637 PVAGLVIGVL VTVLVQSSST SSSIVVSMVA SSLLNVQAAI PIIMGANIGT
201 250
ENSP00000371483/1-690 SITNTIVALM QVGDRSEFRR AFAGATVHDF FNWLSVLVLL PVEVATHYLE
bmy_02057T0/1-503 ----QCIMLM ---------- ------VHEL I-WVS----- --PDASHFLP
ENSBTAP00000002023/1-693 SITNTIVALM QAGDRKEFRR AFAGATVHDF FNWLSVLVLL PLEAATGYLE
BACU002252/1-694 SITNTIVALM QAGDRSEFRR AFAGATVHDF FNWLSVLVLL PLEAATHYLE
ENSTTRP00000005760/1-637 SITNTIVALM QAGDRSEFRR AFAGATVHDF FNWLSVLVLL PLEAATHYLE
251 300
ENSP00000371483/1-690 IITQLIVESF HFKNGEDAPD LLKVITKPFT KLIVQLDKKV ISQIAMNDEK
bmy_02057T0/1-503 ---------- -FPTRNECYG L-------YI AFLM------ ----------
ENSBTAP00000002023/1-693 RLTNLVVESF HFKNGEEAPE LLKVITDPFT KLIIQLDKSI LNQIAMNDES
BACU002252/1-694 RLTNLVVETF NFKNGEDAPE LLKVITDPFT KLIIQLDKKV INQIAMNDET
ENSTTRP00000005760/1-637 RLTNLVVESF NFKNGEDAPE LLKVITDPFT KLIIQLDKKV INQIAMNDET
301 350
ENSP00000371483/1-690 AKNKSLVKIW CKTFTNKTQI NVTVPSTANC TSPSLCWTDG IQNWTMKNVT
bmy_02057T0/1-503 ---------- ---FATQTER NVTVPSPDNC TSPSLCWMDG LHTWTIKNVT
ENSBTAP00000002023/1-693 VQNKSMIKIW CKTFTNVTER NVTVPSPENC TSPSLCWTDG LYTWTIKNVT
BACU002252/1-694 AKNKSMIKIW CKTFTNVTER NVTVPSPDNC TSPSLCWTDG LHTWTIKNVT
ENSTTRP00000005760/1-637 -QNKSMIKIW CKTFTSMTER NVTVPSPDNC TSPSLCWTDG LHTWTIKNVT
351 400
ENSP00000371483/1-690 YKENIAKCQH IFVNFHLPDL AVGTILLILS LLVLCGCLIM IVKILGSVLK
bmy_02057T0/1-503 HQENIAKCQH IFVNFNLPDV VVGTILLVVS LLVLCSCLIL IVKLLGSVLR
ENSBTAP00000002023/1-693 YKENIAKCQH IFVNFNLSDA IVGTILLITS LLILCTCLIL IVKLLGSVLR
BACU002252/1-694 HQENIAKCQH IFVNFNLPDV VVGTILLVVS LLVLCSCLIL IVKLLGSVLR
ENSTTRP00000005760/1-637 HQENIAKCQH IFVNFNLPDV VVGTILLVVS LLVLCSCLVL IVKLLGSVLR
401 450
ENSP00000371483/1-690 GQVATVIKKT INTDFPFPFA WLTGYLAILV GAGMTFIVQS SSVFTSALTP
bmy_02057T0/1-503 GQVAVVIKKT INTDFPFPFA WVTGYLAILV GAGMTFIVQS SSVFTSAMTP
ENSBTAP00000002023/1-693 GQVAAVIKKT INTDFPYPFS WVTGYLAILV GAGMTFIVQS SSVFTSAMTP
BACU002252/1-694 GQVAVVIKKT INTDFPFPFA WVTGYLAILV GAGMTFIVQS SSVFTSAMTP
ENSTTRP00000005760/1-637 GQVAVVIKKT INTDFPFPFA WVTGYLAILV GAGMTFIVQS SSVFTSAMTP
451 500
ENSP00000371483/1-690 LIGIGVITIE RAYPLTLGSN IGTTTTAILA ALASPGNALR SSL-------
bmy_02057T0/1-503 LIGIGVISIE RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSLQMKMRKT
ENSBTAP00000002023/1-693 LIGIGVISIQ RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSL-------
BACU002252/1-694 LIGIGVISIE RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSL-------
ENSTTRP00000005760/1-637 LIGIGVISIE RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSL-------
501 550
ENSP00000371483/1-690 ---------- ---------- --------QI ALCHFFFNIS GILLWYPIPF
bmy_02057T0/1-503 QASATRRRPL LPDPTVQQTH SPVQPLAFQI ALCHFFFNIS GILLWYPIPF
ENSBTAP00000002023/1-693 ---------- ---------- --------QI ALCHFFFNIS GIILWYPIPF
BACU002252/1-694 ---------- ---------- --------QI ALCHFFFNIS GILLWYPIPF
ENSTTRP00000005760/1-637 ---------- ---------- --------QI ALCHFFFNIS GILLWYPIPF
551 600
ENSP00000371483/1-690 TRLPIRMAKG LGNISAKYRW FAVFYLIIFF FLIPLTVFGL SLAGWRVLVG
bmy_02057T0/1-503 TRLPIRLAKG LGSISAEYRW FAVFYLVIFF FLIPLAVFGL SLVGWPVLVG
ENSBTAP00000002023/1-693 TRLPIRLAKG LGNISSKYRW FAIVYLIVFF FLIPLAVFGL SLIGWPVLVG
BACU002252/1-694 TRLPIRLAKG LGSISAEYRW FAVFYLVIFF FLIPLAVFGL SLVGWPVLVG
ENSTTRP00000005760/1-637 TRLPIRLAKW LGSISAKYRW FAVFYLVTFF FLIPLAVFGL SLVGWPVLVG
601 650
ENSP00000371483/1-690 VGVPVVFIII LVLCLRLLQS RCPRVLPKKL QNWNFLPLWM RSLKPWDAVV
bmy_02057T0/1-503 VGAPIIFVVF LVVVLSLLQS HCPRVLPHKL QNWNFLPPWM HSLKPWDKLI
ENSBTAP00000002023/1-693 VASPIVLVIL LVVVLKILQS FCPGSLPQKL RSWDFLPFWM RSLEPWDKLI
BACU002252/1-694 VGAPVIFVVF LVVVLRLLQS HCPRVLPHKL QNWNFLPPWM HSLKPWDKLI
ENSTTRP00000005760/1-637 VGAPIIFVVF LVVAVRLLQS RCPRVLPHKL HNWNFLPLWM HSLKPWDKLI
651 700
ENSP00000371483/1-690 SKFTGCFQMR CCCCCRVCCR ACCLLCDCPK CCRCSKCCED LEEAQEGQDV
bmy_02057T0/1-503 TASTSC---- ---CRRLCCR TCCLLCGCPK CCRCSKCCED L---QEVQDV
ENSBTAP00000002023/1-693 TSLTSCFQMR CCCCCRVCCR LCCGLCGCSK CCRCSKCCED L---EEGKDE
BACU002252/1-694 SASTSC---- ---CRRLCCR TCCLLCGCPK CCCCSKCCED L---QEEQGI
ENSTTRP00000005760/1-637 TMFTSS---- ---CQSLCCR VCCMLCGCPN CCRCSKCC-- ----------
701 750
ENSP00000371483/1-690 PVKAPETFDN ITISREAQGE VPASDSK--- ----TECTAL
bmy_02057T0/1-503 PVKSPEAFAN MAMDKEAQDG VPRSEVDASG TKTISSITAL
ENSBTAP00000002023/1-693 PVKSPEAFNN LAMDKEAQDG VTKSEVDASG TKIVSSVTAL
BACU002252/1-694 PVKSPEAFAN MAMDKEAQDG VPKSKVDASG TKTISSITAL
ENSTTRP00000005760/1-637 ---------- ---------- ---------- ----------