KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:11 2014 Check: 00 .. Name: ENSP00000371483/1-690 Len: 740 Check: 3529 Weight: 1.00 Name: bmy_02057T0/1-503 Len: 740 Check: 4314 Weight: 1.00 Name: ENSBTAP00000002023/1-693 Len: 740 Check: 6292 Weight: 1.00 Name: BACU002252/1-694 Len: 740 Check: 2151 Weight: 1.00 Name: ENSTTRP00000005760/1-637 Len: 740 Check: 6248 Weight: 1.00 // 1 50 ENSP00000371483/1-690 --------MA PWPELGDAQP NPDKYLEGAA GQQPTAPDKS KETNKTDNTE bmy_02057T0/1-503 ---------- ---------- -------MLD GQ-------- ---------- ENSBTAP00000002023/1-693 --------MA PWPELENSQP TSEKYTVKAD GEQSAKPEKA KETEK-DDTG BACU002252/1-694 MGSLSRRTMA PWPELENAQS NSDKYIEGAA GQQSTTPAKG KETGK-NDTD ENSTTRP00000005760/1-637 --------MA PWPELENAQP NSDKYIEGVA GQQSTTPAKG KETGKTDDTD 51 100 ENSP00000371483/1-690 APVTKIELLP SYSTATLIDE PTEVDDPWNL PTLQDSGIKW SERDTKGKIL bmy_02057T0/1-503 ---------- ------ILYS RTDRTSPHHG PIIP--GLLF S--------- ENSBTAP00000002023/1-693 TPITKIELVP SHSTATLIEE PTEVEDPWDL PELKDTGLKW SERDTKGKIL BACU002252/1-694 TPVTKIELLP SYSTMALIEE PTAVEDPWNL PELQDMGIKW SERDTKGKIL ENSTTRP00000005760/1-637 TPVTKIELLP SYSTMALIEE PTVVEDPWNL PELQDTGIKW SERDTKGKIL 101 150 ENSP00000371483/1-690 CFFQGIGRLI LLLGFLYFFV CSLDILSSAF QLVGGKMAGQ FFSNSSIMSN bmy_02057T0/1-503 C--------- -LLAYLWLPP C-LHLWRDPW K--------- ---------- ENSBTAP00000002023/1-693 CVFQGIGKFI LLLVFLYFFV CSLDVLSSAF QLVGGKVAGK FFNNNSIMSN BACU002252/1-694 CVFQGIGKFI LLLVFLYFFV CSLDVLSSAF QLVGGKVAGQ FFSNNSIMSN ENSTTRP00000005760/1-637 CVFQGIGKFI LLLAFLYFFV CSLDVLSSAF QLVGGKVAGQ FFSNNSIMSN 151 200 ENSP00000371483/1-690 PLLGLVIGVL VTVLVQSSST STSIVVSMVS SSLLTVRAAI PIIMGANIGT bmy_02057T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002023/1-693 PVAGMVIGVL VTVLVQSSST STSIVVSMVA SSLLPVHAAI PIIMGANIGT BACU002252/1-694 PVAGLVIGVL VTVLVQSSST SSSIVVSMVA SSLLNVQAAV PIIMGANIGT ENSTTRP00000005760/1-637 PVAGLVIGVL VTVLVQSSST SSSIVVSMVA SSLLNVQAAI PIIMGANIGT 201 250 ENSP00000371483/1-690 SITNTIVALM QVGDRSEFRR AFAGATVHDF FNWLSVLVLL PVEVATHYLE bmy_02057T0/1-503 ----QCIMLM ---------- ------VHEL I-WVS----- --PDASHFLP ENSBTAP00000002023/1-693 SITNTIVALM QAGDRKEFRR AFAGATVHDF FNWLSVLVLL PLEAATGYLE BACU002252/1-694 SITNTIVALM QAGDRSEFRR AFAGATVHDF FNWLSVLVLL PLEAATHYLE ENSTTRP00000005760/1-637 SITNTIVALM QAGDRSEFRR AFAGATVHDF FNWLSVLVLL PLEAATHYLE 251 300 ENSP00000371483/1-690 IITQLIVESF HFKNGEDAPD LLKVITKPFT KLIVQLDKKV ISQIAMNDEK bmy_02057T0/1-503 ---------- -FPTRNECYG L-------YI AFLM------ ---------- ENSBTAP00000002023/1-693 RLTNLVVESF HFKNGEEAPE LLKVITDPFT KLIIQLDKSI LNQIAMNDES BACU002252/1-694 RLTNLVVETF NFKNGEDAPE LLKVITDPFT KLIIQLDKKV INQIAMNDET ENSTTRP00000005760/1-637 RLTNLVVESF NFKNGEDAPE LLKVITDPFT KLIIQLDKKV INQIAMNDET 301 350 ENSP00000371483/1-690 AKNKSLVKIW CKTFTNKTQI NVTVPSTANC TSPSLCWTDG IQNWTMKNVT bmy_02057T0/1-503 ---------- ---FATQTER NVTVPSPDNC TSPSLCWMDG LHTWTIKNVT ENSBTAP00000002023/1-693 VQNKSMIKIW CKTFTNVTER NVTVPSPENC TSPSLCWTDG LYTWTIKNVT BACU002252/1-694 AKNKSMIKIW CKTFTNVTER NVTVPSPDNC TSPSLCWTDG LHTWTIKNVT ENSTTRP00000005760/1-637 -QNKSMIKIW CKTFTSMTER NVTVPSPDNC TSPSLCWTDG LHTWTIKNVT 351 400 ENSP00000371483/1-690 YKENIAKCQH IFVNFHLPDL AVGTILLILS LLVLCGCLIM IVKILGSVLK bmy_02057T0/1-503 HQENIAKCQH IFVNFNLPDV VVGTILLVVS LLVLCSCLIL IVKLLGSVLR ENSBTAP00000002023/1-693 YKENIAKCQH IFVNFNLSDA IVGTILLITS LLILCTCLIL IVKLLGSVLR BACU002252/1-694 HQENIAKCQH IFVNFNLPDV VVGTILLVVS LLVLCSCLIL IVKLLGSVLR ENSTTRP00000005760/1-637 HQENIAKCQH IFVNFNLPDV VVGTILLVVS LLVLCSCLVL IVKLLGSVLR 401 450 ENSP00000371483/1-690 GQVATVIKKT INTDFPFPFA WLTGYLAILV GAGMTFIVQS SSVFTSALTP bmy_02057T0/1-503 GQVAVVIKKT INTDFPFPFA WVTGYLAILV GAGMTFIVQS SSVFTSAMTP ENSBTAP00000002023/1-693 GQVAAVIKKT INTDFPYPFS WVTGYLAILV GAGMTFIVQS SSVFTSAMTP BACU002252/1-694 GQVAVVIKKT INTDFPFPFA WVTGYLAILV GAGMTFIVQS SSVFTSAMTP ENSTTRP00000005760/1-637 GQVAVVIKKT INTDFPFPFA WVTGYLAILV GAGMTFIVQS SSVFTSAMTP 451 500 ENSP00000371483/1-690 LIGIGVITIE RAYPLTLGSN IGTTTTAILA ALASPGNALR SSL------- bmy_02057T0/1-503 LIGIGVISIE RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSLQMKMRKT ENSBTAP00000002023/1-693 LIGIGVISIQ RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSL------- BACU002252/1-694 LIGIGVISIE RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSL------- ENSTTRP00000005760/1-637 LIGIGVISIE RAYPLTLGAN IGTTTTAILA ALASPGSTLK SSL------- 501 550 ENSP00000371483/1-690 ---------- ---------- --------QI ALCHFFFNIS GILLWYPIPF bmy_02057T0/1-503 QASATRRRPL LPDPTVQQTH SPVQPLAFQI ALCHFFFNIS GILLWYPIPF ENSBTAP00000002023/1-693 ---------- ---------- --------QI ALCHFFFNIS GIILWYPIPF BACU002252/1-694 ---------- ---------- --------QI ALCHFFFNIS GILLWYPIPF ENSTTRP00000005760/1-637 ---------- ---------- --------QI ALCHFFFNIS GILLWYPIPF 551 600 ENSP00000371483/1-690 TRLPIRMAKG LGNISAKYRW FAVFYLIIFF FLIPLTVFGL SLAGWRVLVG bmy_02057T0/1-503 TRLPIRLAKG LGSISAEYRW FAVFYLVIFF FLIPLAVFGL SLVGWPVLVG ENSBTAP00000002023/1-693 TRLPIRLAKG LGNISSKYRW FAIVYLIVFF FLIPLAVFGL SLIGWPVLVG BACU002252/1-694 TRLPIRLAKG LGSISAEYRW FAVFYLVIFF FLIPLAVFGL SLVGWPVLVG ENSTTRP00000005760/1-637 TRLPIRLAKW LGSISAKYRW FAVFYLVTFF FLIPLAVFGL SLVGWPVLVG 601 650 ENSP00000371483/1-690 VGVPVVFIII LVLCLRLLQS RCPRVLPKKL QNWNFLPLWM RSLKPWDAVV bmy_02057T0/1-503 VGAPIIFVVF LVVVLSLLQS HCPRVLPHKL QNWNFLPPWM HSLKPWDKLI ENSBTAP00000002023/1-693 VASPIVLVIL LVVVLKILQS FCPGSLPQKL RSWDFLPFWM RSLEPWDKLI BACU002252/1-694 VGAPVIFVVF LVVVLRLLQS HCPRVLPHKL QNWNFLPPWM HSLKPWDKLI ENSTTRP00000005760/1-637 VGAPIIFVVF LVVAVRLLQS RCPRVLPHKL HNWNFLPLWM HSLKPWDKLI 651 700 ENSP00000371483/1-690 SKFTGCFQMR CCCCCRVCCR ACCLLCDCPK CCRCSKCCED LEEAQEGQDV bmy_02057T0/1-503 TASTSC---- ---CRRLCCR TCCLLCGCPK CCRCSKCCED L---QEVQDV ENSBTAP00000002023/1-693 TSLTSCFQMR CCCCCRVCCR LCCGLCGCSK CCRCSKCCED L---EEGKDE BACU002252/1-694 SASTSC---- ---CRRLCCR TCCLLCGCPK CCCCSKCCED L---QEEQGI ENSTTRP00000005760/1-637 TMFTSS---- ---CQSLCCR VCCMLCGCPN CCRCSKCC-- ---------- 701 750 ENSP00000371483/1-690 PVKAPETFDN ITISREAQGE VPASDSK--- ----TECTAL bmy_02057T0/1-503 PVKSPEAFAN MAMDKEAQDG VPRSEVDASG TKTISSITAL ENSBTAP00000002023/1-693 PVKSPEAFNN LAMDKEAQDG VTKSEVDASG TKIVSSVTAL BACU002252/1-694 PVKSPEAFAN MAMDKEAQDG VPKSKVDASG TKTISSITAL ENSTTRP00000005760/1-637 ---------- ---------- ---------- ----------