KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:13 2014 Check: 00 .. Name: ENSP00000263062/1-836 Len: 842 Check: 7535 Weight: 1.00 Name: ENSBTAP00000002038/1-842 Len: 842 Check: 8988 Weight: 1.00 Name: ENSTTRP00000001432/1-772 Len: 842 Check: 9170 Weight: 1.00 Name: bmy_17622T0/1-594 Len: 842 Check: 443 Weight: 1.00 Name: BACU017200/1-842 Len: 842 Check: 5886 Weight: 1.00 // 1 50 ENSP00000263062/1-836 MSKLSFRARA LDASKPLPVF RCEDLPDLHE YASINRAVPQ MPTGMEKEEE ENSBTAP00000002038/1-842 MSKLSFRARA LDASKPLPVF RCEDLPDLHE YASINRAVPQ MPTGMEKEEE ENSTTRP00000001432/1-772 ---------- ---------- ---------- ---------- ---------- bmy_17622T0/1-594 ---------- ---------- ---------- ---------- ---------- BACU017200/1-842 MSKLSFRARA LDASKPLPVF RCEDLPDLHE YASINRAVPQ MPTGMEKEEE 51 100 ENSP00000263062/1-836 SEHHLQRAIS AQQVYGEKRD NMVIPVPEAE SNIAYYESIY PGEFKMPKQL ENSBTAP00000002038/1-842 SEHHLQRAIS AQQVYGEKRD NMVIPVPEAE SNIAYYESIY PGEFKMPKQL ENSTTRP00000001432/1-772 -EHHLQRAIS AQQVYGEKRD NMVIPVPEAE SNIAYYESIY PGEFRMPKQL bmy_17622T0/1-594 ---------- ---------- -MVIPVPEAE SNIAYYESIY PGEFRMPKQL BACU017200/1-842 SEHHLQRAIS AQQVYGEKRD NMVIPVPEAE SNIAYYESIY PGEFRMPKQL 101 150 ENSP00000263062/1-836 IHIQPFSLDA EQPDYDLDSE DEVFVNKLKK KMDICPLQFE EMIDRLEKGS ENSBTAP00000002038/1-842 IHIQPFSLDA EQPDYDLDSE DEVFVNKLKK KMDICPLQFE EMIDRLEKGS ENSTTRP00000001432/1-772 IHIQPFSLDA EQPDYDLDSE DEVFVNKLKK KMDICPLQFE EMIDRLEKGS bmy_17622T0/1-594 IHIQPFSLDA EQPDYDLDSE DEVFVNKLKK KMDICPLQFE EMIDRLEKGS BACU017200/1-842 IHIQPFSLDA EQPDYDLDSE DEVFVNKLKK KMDICPLQFE EMIDRLEKGS 151 200 ENSP00000263062/1-836 GQQPVSLQEA KLLLKEDDEL IREVYEYWIK KRKNCRGPSL IPSVKQEKRD ENSBTAP00000002038/1-842 GQQPVSLQEA KLLLKEDDEL IREVYEYWIK KRKNCRGPSL IPSVKQEKRD ENSTTRP00000001432/1-772 GQQPVSLQEA KLLLKEDDEL IRDVHEHWVR RRRDCRGPAL IPAVKQEKRD bmy_17622T0/1-594 GQQPVSLQEA KLLLKEDDEL IREVYEYWIK KRKNCRGPSL IPSVKQEKRD BACU017200/1-842 GQQPVSLQEA KLLLKEDDEL IREVYEYWIK KRKNCRGPSL IPSVKQEKRD 201 250 ENSP00000263062/1-836 GSSTNDPYVA FRRRTEKMQT RKNRKNDEAS YEKMLKLRRD LSRAVTILEM ENSBTAP00000002038/1-842 GSSTNDPYVA FRRRTEKMQT RKNRKNDEAS YEKMLKLRRD LSRAVTILEM ENSTTRP00000001432/1-772 GSSTNDPYVA FRRRTEKMQT RKNRKNDEAS YEKMLKLRRD LSRAVTILEM bmy_17622T0/1-594 GSSTNDPYVA FRRRTEKMQT RKNRKNDEAS YEKMLKLRRD LSRAVTILEM BACU017200/1-842 GSSTNDPYVA FRRRTEKMQT RKNRKNDEAS YEKMLKLRRD LSRAVTILEM 251 300 ENSP00000263062/1-836 IKRREKSKRE LLHLTLEIME KRYNLGDYNG EIMSEVMAQR QPMKPTYAIP ENSBTAP00000002038/1-842 IKRREKSKRE LLHLTLEIME KRYNLGDYSG EIMSEVMAQR QPVKPTYTIP ENSTTRP00000001432/1-772 IKRREKSKRE LLHLTLEIME K--------- ----EVMAQR QPMKPAYSIP bmy_17622T0/1-594 IKRREKSKRE LLHLTLEIME KRYSLGDYSG EIVSEVMAQR QPMKPAYSIP BACU017200/1-842 IKRREKSKRE LLHLTLEIME KRYSLGDYSG EIVSEVMAQR QPMKPAYSIP 301 350 ENSP00000263062/1-836 IIPITNSSQF KHQEAMDVKE FKVNKQDKAD LIRPKRKYEK KPKVLPSSAA ENSBTAP00000002038/1-842 LIPIANSSQF KHQEAMDVKE FKVNKQDKAD LIRPKRKYEK KPKVLPSSAA ENSTTRP00000001432/1-772 VVPLTNSGQF KHQEAMDVKE FKANKQDKAE LIRPKRKYEK KPKVLPSSAA bmy_17622T0/1-594 VVALTNSGQF KHQEAMDVKE FKANKPDKAD LTRPKRKYEK KPKVLPPSAA BACU017200/1-842 VVALTNSGQF KHQEAMDVKE FKANKPDKAD LTRPKRKYEK KPKVLPPSAA 351 400 ENSP00000263062/1-836 ATPQQTSPAA LPVFNAKDLN QYDFPSSDEE PLSQVLSGSS EAEEDNDPDG ENSBTAP00000002038/1-842 AAPQQASPTT LPVFNAKDLN QYDFPSSDEE PLSQVLSGSS EAEEENDPDG ENSTTRP00000001432/1-772 ATPQQAGPAA LPGFSAKDLN QYDFPSSDEE PLSQVLSGSS EAEEENDPDG bmy_17622T0/1-594 A-PQQAGPAA LPVFNAKDLN QYDFPSSDEE PLSQVLSGSS EAEEENDPDG BACU017200/1-842 AAPQQAGPAT LPVFNAKDLN QYDFPSSDEE PLSQVLSGSS EAEEENDPDG 401 450 ENSP00000263062/1-836 PFAFRRKAGC QYYAPHLDQT GNWPWTSPKD GGLGDVRYRY CLTTLTVPQR ENSBTAP00000002038/1-842 PFAFRRKAGC QYYAPHLDQT GNWPWTSPSD GGIGDVRYRY CLTTLTVPQR ENSTTRP00000001432/1-772 PFAFRRKAGC QYYAPHLDQT GNWPWTSPSD GGLGDVRYRY CLTTLTVPQR bmy_17622T0/1-594 PFAFRRKAGC QYYAPHLDQT GNWPWTSPSD GGLGDXRYRY CLTTLSVPQR BACU017200/1-842 PFAFRRKAGC QYYAPHLDQT GNWPWTSPSD GGLGDARYRY CLTTLSVPQR 451 500 ENSP00000263062/1-836 CIGFARRRVG RGGRVLLDRA HSDYDSVFHH LDLEMLSSPQ HSPVNQFANT ENSBTAP00000002038/1-842 CIGFARRRVG RGGRVLLDRA HSDYDSVFRH LDLDMLSSPQ HSPVNQSANT ENSTTRP00000001432/1-772 CIGFARRRVG RGGRVLLDRA HSDYDSMFRH LDLEMLSSPQ HSPVNQIANT bmy_17622T0/1-594 CIGFARRRVG RGGRVLLDRA HSDYDSMFRH LDLEMLSSPQ HSPVNQIANT BACU017200/1-842 CIGFARRRVG RGGRVLLDRA HSDYDSMFRH LDLEMLSSPQ HSPVSQIANT 501 550 ENSP00000263062/1-836 SETNTSDKSF SKDLSQILVN IKSCRWRHFR PRTPSLHDSD NDELSCRKLY ENSBTAP00000002038/1-842 SETNTSDKSF SKDLSQILVN IKSCRWRHFR PRTPSLHDSD NDELSCRKLY ENSTTRP00000001432/1-772 SETNTSDKSF SKDLSQILVN IKSCRWRHFR PRTPSLRDSD SDGVSCRKWY bmy_17622T0/1-594 SETNTSDKSF SKDLSQILVN IKSCRWRHFR PRTPSLRDSD SDGVSCRKWC BACU017200/1-842 SETNTSDKSF SKDLSQILVN IKSCRWRHFR PRTPSLRDSD SDGVSCRKWY 551 600 ENSP00000263062/1-836 RSINRTGTAQ PGTQTCSTST QSKSSSGSAH FAFTAEQYQQ HQQQLALMQK ENSBTAP00000002038/1-842 RSINRTGTAQ PGTQTCSTST QSKSSSGSAH FAFTAEQYQQ HQQQLALMQK ENSTTRP00000001432/1-772 RSVSRTGAAQ PGTQTCSASA QSKSGSGSAH FAFTAEQYQQ HQQQLALMQK bmy_17622T0/1-594 RNVSRTGAAQ PRTQTCSASA QSKSGSGSAH FAFTAEQYQQ HQHQLALMQK BACU017200/1-842 RNVSRTRAAQ PGTQTCSASA QSKSSSGSAH FAFTAEQYQQ HQHQLALMQK 601 650 ENSP00000263062/1-836 QQLAQIQQQQ ANSNSSTNTS QNLASNQQKS GFRLN----- -IQGLERTLQ ENSBTAP00000002038/1-842 QQLAQIQQQQ ATSNSSTTVP QNLASNQQKS GFRLNPHHSH SIQGLERTLQ ENSTTRP00000001432/1-772 QQLAQIQQQQ ASSNSSTTTS QSLASNQQES GFHLN----- -VQGLERTFQ bmy_17622T0/1-594 QQLAQIQQQQ ASSHSSTATS QSLASNQQKS GFHLNLHHSH SMQGLERTLQ BACU017200/1-842 QQLAQIQQQQ ASSHSSTATS QSLASNQQKS GFHLNLHHSH SIQGLERTLQ 651 700 ENSP00000263062/1-836 GFVSKTLDSA SAQFAASALV TSEQLMGFKM KDDVVLGIGV NGVLPASGVY ENSBTAP00000002038/1-842 GFVSKTLDSA SAQFAASALV TSEQLMGFKM KEDVVLGIGV NGVLPASGVY ENSTTRP00000001432/1-772 GFVSKTLDSA SAQFAASALV TSEQLMGFKM KEDVVLGIGV NGVLPASGVY bmy_17622T0/1-594 ---------- ---------- ---------- ---------- ---------- BACU017200/1-842 GFVSKTLDSA SAQFAASALV TSEQLMGFKM KEDVVLGIGV NGVLPASGVY 701 750 ENSP00000263062/1-836 KGLHLSSTTP TALVHTSPST AGSALLQPSN ITQTSSSHSA LSHQVTAANS ENSBTAP00000002038/1-842 KGLHLSSTTP TALVHTSPST AGPALLQPAS VTQTAGSHSA PGHPATAANS ENSTTRP00000001432/1-772 KGLHLSSTAP PALVHTSPST AGPALLQPAN ATQTAGSHSA PSHPVTAASS bmy_17622T0/1-594 ---------- ---------- ---------- ---------- ---------- BACU017200/1-842 KGLHLSSTTP PALVHTSPST AGPALLQPAN VTQTAGSHSG PSHPVTAAGS 751 800 ENSP00000263062/1-836 ATTQVLIGNN IRLTVPSSVA TVNSIAPINA RHIPRTLSAV PSSALKLAAA ENSBTAP00000002038/1-842 ATTQVLIGNN IRLTVPSSVA TVNSITPINA RHIPRTLSAV PSSALKLAAA ENSTTRP00000001432/1-772 ATTQVLIGNN IRLTVPSSVA TVNSLAPINA RHIPRTLSAV PSSALKLAAA bmy_17622T0/1-594 ---------- ---------- ---------- ------LSYC PKG----ASG BACU017200/1-842 ATTQVLIGNN IRLTVPSSVA TVNSLAPINA RHIPRTLSAV PSSALKLAAA 801 850 ENSP00000263062/1-836 ANCQVSKVPS SSSVDSVPRE NHESEKPALN NIADNTVAME VT ENSBTAP00000002038/1-842 ANCQVSKVPS SSSVDAAPRE NHDSEKPALN NIADNTVAME VT ENSTTRP00000001432/1-772 ANCQVSKVPS SSAVDAVPRE NHESEKPALN NIADNTVAME VT bmy_17622T0/1-594 HVC------- ---------- ---------- ------ICM- -- BACU017200/1-842 ANCQVSKVPS SSSVDAVPRE NHESEKPALN NIADNTVAME VT