KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:16:16 2014  Check: 00 ..

 Name: bmy_08341T0/1-179         Len:    210  Check:  3983  Weight:  1.00
 Name: BACU013064/1-210          Len:    210  Check:  9535  Weight:  1.00
 Name: ENSBTAP00000002054/1-143  Len:    210  Check:  5779  Weight:  1.00
 Name: ENSP00000296871/1-144     Len:    210  Check:  8567  Weight:  1.00
 Name: ENSTTRP00000006597/1-144  Len:    210  Check:  8047  Weight:  1.00

//


                          1                                                   50
bmy_08341T0/1-179         MWLQNLLLLS TVVCSTSAPT HPPSPATRPW QHVDAIKEAL SILNHSKDSA 
BACU013064/1-210          MWLQNLLLLS TEVCSTSAPT HPPSPATWPW QHVDAIKEAL SILNHSKDSA 
ENSBTAP00000002054/1-143  MWLQNLLLLG TVVCSFSAPT RPPNTATRPW QHVDAIKEAL SLLNHSSDTD 
ENSP00000296871/1-144     MWLQSLLLLG TVACSISAPA RSPSPSTQPW EHVNAIQEAR RLLNLSRDTA 
ENSTTRP00000006597/1-144  MWLQNLLLLS TVVCSTSAPT HPPSPATRPW QHVDAIKEAL SILNHSKDTA 


                          51                                                 100
bmy_08341T0/1-179         AVMKETTEVI SEMFDSQEPT CLQTRLELYK QGLRGSLTSL EGPLTMMASH 
BACU013064/1-210          AVMNETTEVI SEMFDSQEPT CLQTRLELYK QGLRGSLTSL EGPLTMMASH 
ENSBTAP00000002054/1-143  AVMNDT-EVV SEKFDSQEPT CLQTRLKLYK NGLQGSLTSL MGSLTMMATH 
ENSP00000296871/1-144     AEMNETVEVI SEMFDLQEPT CLQTRLELYK QGLRGSLTKL KGPLTMMASH 
ENSTTRP00000006597/1-144  AVMDETTEVI SEMFDSQEPT CLQTRLELYK QGLRGSLTSL EGPLTMMASH 


                          101                                                150
bmy_08341T0/1-179         YKQHCPPTQE LCYGKFREGF ISTLNEISMK Y-NDYHIEKD MQELTKICPK 
BACU013064/1-210          YKQHCPPTQE LCYGKFREGF ISTLNEISMK YNNDYHVEKD MQELTKICPK 
ENSBTAP00000002054/1-143  YEKHCPPTPE TSCGT----- ----QFISFK N-----FKED LKEFLFIIP- 
ENSP00000296871/1-144     YKQHCPPTPE TSCAT----- ----QIITFE S-----FKEN LKDFLLVIP- 
ENSTTRP00000006597/1-144  YKQHCPPTQE TSCET----- ----QIITFK S-----FKEN LKDFLFTIP- 


                          151                                                200
bmy_08341T0/1-179         LKVQP----- ---------- ---------L EMHTNQFWNP GRNQRKLQES 
BACU013064/1-210          LKSLPKGRRC TVEIGTENTM KHMRHKALMM DEARSKCHDS KEQLQYLKSS 
ENSBTAP00000002054/1-143  ---------- ---------- ---------- ----FDCWEP AQK------- 
ENSP00000296871/1-144     ---------- ---------- ---------- ----FDCWEP VQE------- 
ENSTTRP00000006597/1-144  ---------- ---------- ---------- ----FDCWEA VQK------- 


                          201                                                250
bmy_08341T0/1-179         QA------MP 
BACU013064/1-210          QASAAHTKKP 
ENSBTAP00000002054/1-143  ---------- 
ENSP00000296871/1-144     ---------- 
ENSTTRP00000006597/1-144  ----------