KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:16 2014 Check: 00 .. Name: ENSTTRP00000003511/1-528 Len: 529 Check: 1857 Weight: 1.00 Name: ENSP00000355902/1-528 Len: 529 Check: 3238 Weight: 1.00 Name: ENSBTAP00000002064/1-377 Len: 529 Check: 3928 Weight: 1.00 Name: bmy_14937T0/1-321 Len: 529 Check: 1886 Weight: 1.00 Name: BACU004888/1-353 Len: 529 Check: 6762 Weight: 1.00 // 1 50 ENSTTRP00000003511/1-528 MFGAAGRQPI GAPAAGNSWH FSRTMEELVH DLVSALEESS EQARXXXXXX ENSP00000355902/1-528 MFGAAGRQPI GAPAAGNSWH FSRTMEELVH DLVSALEESS EQARGGFAET ENSBTAP00000002064/1-377 MFGAAGRQPI GAPAAGNSWH FSRTMEELVH DLVSALEESS EQARGGFAET bmy_14937T0/1-321 MYDLLFVTLL G--------H FSRTMEELVH DLVSALEESS EQARGGFAET BACU004888/1-353 ---------- ---------- ----MEELVH DLVSALEESS EQARGGFAET 51 100 ENSTTRP00000003511/1-528 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355902/1-528 GDHSRSISCP LKRQARKRRG RKRRSYNVHH PWETGHCLSE GSDSSLEEPS ENSBTAP00000002064/1-377 GDHSRSISCP LKRQARKRRG RKRRSYNVHH PWETGHCLSE GSDSSLEEPS bmy_14937T0/1-321 GDHSRSISCP LKRQARKRRG RKRRSYNVHH PWETGHCLSE GSDSSLEEPS BACU004888/1-353 GDHSRSISCP LKRQARKRRG RKRRSYNVHH PWETGHCLSE GSDSSLEEPS 101 150 ENSTTRP00000003511/1-528 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXNVRGKR PLWHESDFAV ENSP00000355902/1-528 KDYRENHNNN KKDHSDSDDQ MLVAKRRPSS NLNNNVRGKR PLWHESDFAV ENSBTAP00000002064/1-377 KDYRENHNNN KKDHSDSDDQ MLVAKRRPSS NLNNNVRGKR PLWHESDFAM bmy_14937T0/1-321 KDYRENHNNN KKDHSDSDDQ MLVAKRRPSS NLNNNVRGKR PLWHESDFAV BACU004888/1-353 KDYRENHNNN KKDHSDSDDQ MLVAKRRPSS NLNNNVRGKR PLWHESDFAV 151 200 ENSTTRP00000003511/1-528 DSLGNR-LRR RRKVKRMAVD FPQDSANKRT VTQPLEGCRD QDMDHDNRAY ENSP00000355902/1-528 DNVGNRTLRR RRKVKRMAVD LPQDISNKRT MTQPPEGCRD QDMDSD-RAY ENSBTAP00000002064/1-377 DSLGNRTLRR RRKVKRMAVD LPPENPNKRT MTQPLEGCRD QDMDNDNRAY bmy_14937T0/1-321 DSLGNRPLRR RRKVKRMAVD LPQDSANKRT MTQPPEACRD QDMDNDSRAY BACU004888/1-353 DSLGNRPLRR RRKVKRMAVD LPQDSANKRT MTQPLEACRD QDMDNDSRAY 201 250 ENSTTRP00000003511/1-528 QCHEFTKSKV KKRKLKIVRQ GPKIQDEGVV LESEETSQTN KDKMGYEEQK ENSP00000355902/1-528 QYQEFTKNKV KKRKLKIIRQ GPKIQDEGVV LESEETNQTN KDKMECEEQK ENSBTAP00000002064/1-377 QYQEFSKNKV KKRKLKIVRQ GPKIQDEGVV LESEEISQTN KDKMEYEEQK bmy_14937T0/1-321 QYQEFTKNKV KKRKLKIVRQ GPKIQDEGVV LESEETSQTN KDKMEYEEQK BACU004888/1-353 QYQEFTKNKV KKRKLKIVRQ GPKIQDEGVV LESEETSQTN KDKMEYEEQK 251 300 ENSTTRP00000003511/1-528 VSDELMSESE SSSLSSTDAG LFTNDEGRQG DDEQSDWFYE KESGGACGIT ENSP00000355902/1-528 VSDELMSESD SSSLSSTDAG LFTNDEGRQG DDEQSDWFYE KESGGACGIT ENSBTAP00000002064/1-377 VSDELMSESD SSSLSSTDAG LFTNDEGRQG DDEQSDWFYE KESGGACGIT bmy_14937T0/1-321 VSDELMSESD SSSLSSTDAG LFTNDEGRQG ---------- ---------- BACU004888/1-353 VSDELMSESD SSSLSSTDAG LFTNDEGRQG DDEQSDWFYE KESGGACGIT 301 350 ENSTTRP00000003511/1-528 GVIPWWEKED PTDLDKNLPD PVFESILTGS FPLMSHPGRR GFQARLSRLH ENSP00000355902/1-528 GVVPWWEKED PTELDKNVPD PVFESILTGS FPLMSHPSRR GFQARLSRLH ENSBTAP00000002064/1-377 GVIPWWEKED PTDLDKNLPD PVFESILPGS FPLMSHPGRR GFQARLSRLH bmy_14937T0/1-321 ---------- ---------- ---------- ---------- -FQARLSRLH BACU004888/1-353 GVIPWWEKEE PTDLDKNLPD PVFESILTGS FPLMSHPGRR GFQARLSRLH 351 400 ENSTTRP00000003511/1-528 GMPSKNIKKS GGTPTSMVTT PGPVSNKRMV HFSPDSHHHD HWFSPGARTE ENSP00000355902/1-528 GMSSKNIKKS GGTPTSMVPI PGPVGNKRMV HFSPDSHHHD HWFSPGARTE ENSBTAP00000002064/1-377 GMPSKNIKKS GGTPPSM--- ---------- ---------- ---------- bmy_14937T0/1-321 GMPSKNIKKS GGTPTSMVGM L--------- ---------- ---------- BACU004888/1-353 GMPSKNMKKS GGTPTSM--- ---------- ---------- ---------- 401 450 ENSTTRP00000003511/1-528 HGQHQLLRDN RAERGHKKNC SVKTASRQTS MHLGSLCTGD IKRRRKAAPL ENSP00000355902/1-528 HDQHQLLRDN RAERGHKKNC SVRTASRQTS MHLGSLCTGD IKRRRKAAPL ENSBTAP00000002064/1-377 ---------- ---------- -------ATN ---------- ---------- bmy_14937T0/1-321 ---------- --------SC LLLMFGNATN ---------- ---------- BACU004888/1-353 ---------- ---------- -------ATN ---------- ---------- 451 500 ENSTTRP00000003511/1-528 PGPTTAGFVG ENAQPILENN IGNRMLQNMG WTPGSGLGRD GKGIAEPIQA ENSP00000355902/1-528 PGPTTAGFVG ENAQPILENN IGNRMLQNMG WTPGSGLGRD GKGISEPIQA ENSBTAP00000002064/1-377 ---------- ---------- ---------- WTS------- ---------- bmy_14937T0/1-321 ---------- ---------- ---------- WTS------- ---------- BACU004888/1-353 ---------- ---------- ---------- WTS------- ---------- 501 550 ENSTTRP00000003511/1-528 MQRPKGLGLG FPLPKSIPTA TASHSGKSA ENSP00000355902/1-528 MQRPKGLGLG FPLPKSTSAT TTPNAGKSA ENSBTAP00000002064/1-377 ---------E IPL------- --------- bmy_14937T0/1-321 ---------E IPL------- --------- BACU004888/1-353 ---------E IPL------- ---------