KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:22 2014 Check: 00 .. Name: ENSTTRP00000006833/1-494 Len: 682 Check: 9469 Weight: 1.00 Name: ENSP00000376330/1-503 Len: 682 Check: 5540 Weight: 1.00 Name: bmy_07631T0/1-660 Len: 682 Check: 5314 Weight: 1.00 Name: BACU019284/1-436 Len: 682 Check: 3916 Weight: 1.00 Name: ENSBTAP00000002076/1-503 Len: 682 Check: 5528 Weight: 1.00 // 1 50 ENSTTRP00000006833/1-494 ---------- ---------- ---------- ---------- ---------- ENSP00000376330/1-503 ---------- ---------- ---------- ---------- ---------- bmy_07631T0/1-660 MSGTSEKKSS GVEKKCQECW RRKARAGSGQ GREHRRGLRH GDEFVSQTAE BACU019284/1-436 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002076/1-503 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006833/1-494 --MPVPPPPA PPPPPTFS-- ---------- ---LANTEKP TLNKSEQAGR ENSP00000376330/1-503 --MPVPPPPA PPPPPTFA-- ---------- ---LANTEKP TLNKTEQAGR bmy_07631T0/1-660 SVTVQDARTA PSSTPTTAHV CSVYSHSGLN MNDTANTEKP TLSKSEQAGR BACU019284/1-436 ---------- ---------- ---------- ----ANTEKP ALSKSEQAGR ENSBTAP00000002076/1-503 --MPVPPPPA PPPPPTFA-- ---------- ---LANTEKP SLSKSEQAGR 101 150 ENSTTRP00000006833/1-494 NALLSDINKG KKLKKTVTND RSAPILDKPK G--------- -------AGG ENSP00000376330/1-503 NALLSDISKG KKLKKTVTND RSAPILDKPK GAGAGGGGGG FGGGGGFGGG bmy_07631T0/1-660 NALLSDISKG QKLKKTVTND RSAPILDKPK G--------- -------AGG BACU019284/1-436 NALLSDISKG KKLKKAVTND RSAPILDKPK G--------- -------AGG ENSBTAP00000002076/1-503 NALLSDISKG KKLKKTVTND RSAPILDKPK GAAAGGGGGG -GGGGSYAGG 151 200 ENSTTRP00000006833/1-494 GGGGGSGSFG GGGPPGLGGL FQAGMPKLRS TANRESDSGG SRPPILPPGG ENSP00000376330/1-503 GGGGGGGSFG GGGPPGLGGL FQAGMPKLRS TANRDNDSGG SRPPLLPPGG bmy_07631T0/1-660 GGGGGSGSFG GGGPPGLGGL FQAGMPKLRS TANRESDSGG SRPPILPPGG BACU019284/1-436 GGGGGGGSFG GGGPPGLGGL FQAGMPKLRS TANRESDSGG SRPPILPPGG ENSBTAP00000002076/1-503 GGGGGGGNFG GGGPPGLGGL FQAGMPKLRS TANRENESGG SRPPILPPGG 201 250 ENSTTRP00000006833/1-494 RPTSAKPFSP PSGPGRFPVP SPGHRSGPPE SQRNRMPPPR PDVXXXXXXX ENSP00000376330/1-503 RSTSAKPFSP PSGPGRFPVP SPGHRSGPPE PQRNRMPPPR PDVGSKPDSI bmy_07631T0/1-660 RPTSAKPFSP PSGPGRFPVP SPGHRSGPPE PQRNRMPPPR PDVGAKPDNI BACU019284/1-436 RPTSAKPFSP PGGPGRFPVP SPGHRSGPPE PQRNRMPPPR PDVGAKPDNI ENSBTAP00000002076/1-503 RATSAKPFTP PSGPGRFPVP PAGHRSGPPE PQRNRMPPPR PEVGAKPDNI 251 300 ENSTTRP00000006833/1-494 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376330/1-503 PPPVPSTPRP IQSSPHNRGS PPVPGGPRQP SPGPTPPPFP GNRGTALGGG bmy_07631T0/1-660 PPPVPNTPRP VQSSLHNRGS ILVPGAPRQP SPGPTPPPLP GNRGAAFGGG BACU019284/1-436 PPPVPNTPRP VQSSLHNRGS ILVPGAPRQP SPGPTPPPLP GNRGAAFGGG ENSBTAP00000002076/1-503 PPPVPNTPRP SQSSLHNRGT PLVLGAPRQS SPGLTPPPFP GNRGAAFGGG 301 350 ENSTTRP00000006833/1-494 XXXXXXXXXX XXXXXXXXXP PTPSRALDDK PPPPPPPVGS RPPIHREAVP ENSP00000376330/1-503 SIRQSPLSSS SPFSNRPPLP PTPSRALDDK PPPPPPPVGN RPSIHREAVP bmy_07631T0/1-660 STRQTPSGSS SPFSNRPPLP PTPSRALDDK PPPPPPPVGS RPSIHREAFP BACU019284/1-436 STRQTPSGSS SPFSNRPPLP PTPSRALDDK PPPPPP---- ---------- ENSBTAP00000002076/1-503 SIRHTPSGSS TPFSTRPPLP PTPSRALDDK PPPPPPPVGN RPSIHRESVP 351 400 ENSTTRP00000006833/1-494 PPPPQNSKPP VPSTPRPSPS AQA--PPPPP SRPGPPPVPP GSGGGGGGDE ENSP00000376330/1-503 PPPPQNNKPP VPSTPRPSAS SQAPPPPPPP SRPGPPPLPP SS--SGN-DE bmy_07631T0/1-660 PPPPQNSKPP VPSTPRPSPS AQA--PPPPP SRPGPPPVPP GS--SGGGDE BACU019284/1-436 --------PX VPSTPRPSPS AQA--PPPHP SRPGPPPVPP GS--SGGGDE ENSBTAP00000002076/1-503 LPPPQNSKPP VPSTPRPSSS SQA-PPPPPP SRPGPPPLPP VS--SGSGDE 401 450 ENSTTRP00000006833/1-494 IPRLPQRNLS L------SSS APPLPSPGRS GPLPPPPSER PPPPVRDPPG ENSP00000376330/1-503 TPRLPQRNLS L------SSS TPPLPSPGRS GPLPPPPSER PPPPVRDPPG bmy_07631T0/1-660 IPRLPQRNLS LSSSSSSSSS APLLPSPGRS GPLPPPPSER PPPPVRDPPG BACU019284/1-436 IPRLPQRNLS LSSSSSSSSS APPLPSPGRS GPLPPPPSER PPPPVRDPPG ENSBTAP00000002076/1-503 IPRLPQRNVS L------SSS APPLPSSGRS GPLPPPPSER PPPPVRDPPG 451 500 ENSTTRP00000006833/1-494 RSGPLPPPPP MNRNGSTSRA LPATPQLPSR SGTD-SPRSG PRPPLPPDRP ENSP00000376330/1-503 RSGPLPPPPP VSRNGSTSRA LPATPQLPSR SGVD-SPRSG PRPPLPPDRP bmy_07631T0/1-660 RSGPLPPPPP MNRNGSTSRA LPATPQLPSR SGID-SPRSG PRPPLPPDRP BACU019284/1-436 RSGPLPPPPP MNRNGSTSRA LPATPQLPSR SGID-SPRSG PRPPLPPDRP ENSBTAP00000002076/1-503 RSGPLPPPPP TNRNGSTSRA LPATPQLPSR SGIDSSPRSG PRPPLPPERP 501 550 ENSTTRP00000006833/1-494 GTGVPPPPPP STSIRNGFQD SSCEDE---- ---------- ---------- ENSP00000376330/1-503 SAGAPPPPPP STSIRNGFQD SPCEDE---- ---------- ---------- bmy_07631T0/1-660 GTGVPPPPPP STSIRNGFQD SSCEGEVWSR LLGNVQAIVG QQLNGRDSRI BACU019284/1-436 GTGVPPPPPP STSIRNGFQD SSCEDE---- ---------- ---------- ENSBTAP00000002076/1-503 GTGAPPPPPP STSIRNGFQD SSCEDE---- ---------- ---------- 551 600 ENSTTRP00000006833/1-494 ---------- ---------- WES------- -RFFFH---- ---------- ENSP00000376330/1-503 ---------- ---------- WES------- -RFYFH---- ---------- bmy_07631T0/1-660 LKRTIFVANL IIPTFLNSSW WMSGKADSSS IRFLICHLQS HMYQQPKVIP BACU019284/1-436 ---------- ---------- WES------- -RFFFH---- ---------- ENSBTAP00000002076/1-503 ---------- ---------- WES------- -RFYFH---- ---------- 601 650 ENSTTRP00000006833/1-494 ---------- -PISDLPPPE PYVPTTKSYP SKLARNESR- ------SGSN ENSP00000376330/1-503 ---------- -PISDLPPPE PYVQTTKSYP SKLARNESR- ------SGSN bmy_07631T0/1-660 VNWQEMKAGV DPTEEKGVPH PFL-LSRGDP CLLFSTQAQE LLLLLLSESH BACU019284/1-436 ---------- -PISDLPPPE PYVPTTKSYP SKLARNESR- ------S--- ENSBTAP00000002076/1-503 ---------- -PISDLPPPE PYVPTTKSYP SKLARNESR- ------SGSN 651 700 ENSTTRP00000006833/1-494 RRERGAPPLP PIPRPPKQVA ---------- -- ENSP00000376330/1-503 RRERGAPPLP PIPR------ ---------- -- bmy_07631T0/1-660 TLLLSSSLVP FMMAIGKKGG DVGMRVCRVG MQ BACU019284/1-436 ---------- ---------- ---------- -- ENSBTAP00000002076/1-503 RRERGAPPLP PIPR------ ---------- --