KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:24 2014 Check: 00 .. Name: ENSP00000322218/1-1349 Len: 1350 Check: 8247 Weight: 1.00 Name: ENSTTRP00000015044/1-1320 Len: 1350 Check: 8783 Weight: 1.00 Name: ENSBTAP00000002094/1-1318 Len: 1350 Check: 9104 Weight: 1.00 Name: BACU013649/1-1116 Len: 1350 Check: 8670 Weight: 1.00 Name: bmy_01467T0/1-1124 Len: 1350 Check: 9703 Weight: 1.00 // 1 50 ENSP00000322218/1-1349 MIIKEYRIPL PMTVEEYRIA QLYMIQKKSR NETYGEGSGV EILENRPYTD ENSTTRP00000015044/1-1320 MIIKEYRIPL PMTVEEYRIA QLYMIQXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000002094/1-1318 MIIKEYRIPL PMTVEEYRIA QLYMIQKKSR NETHGEGSGV EILENRPYTD BACU013649/1-1116 ---------- ---------- ---------- ---------- ---------- bmy_01467T0/1-1124 ---------- -MTVEEYRIA QLYMIQKKSR NETFGEGSGV EILENRPYTD 51 100 ENSP00000322218/1-1349 GPGGSGQYTH KVYHVGMHIP SWFRSILPKA ALRVVEESWN AYPYTRTRFT ENSTTRP00000015044/1-1320 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXFT ENSBTAP00000002094/1-1318 GPGGSGQYTH KVYHVGMHIP SWFRSILPKA ALRVVEESWN AYPYTRTRFT BACU013649/1-1116 ---------- ------MHIP SWFRSILPKA ALRVVEESWN AYPYTRTRFT bmy_01467T0/1-1124 GPGGSGQYTH KVYHVGMHIP SWFRSILPKA ALRVVEESWN AYPYTRTRFT 101 150 ENSP00000322218/1-1349 CPFVEKFSID IETFYKTDAG ENPDVFNLSP VEKNQLTIDF IDIVKDPVPH ENSTTRP00000015044/1-1320 CPFVEKFSID IETFYKTDAG ENPNVFSLSP VEKNQLTIDF IDIVKDPVPP ENSBTAP00000002094/1-1318 CPFVEKFSID IETFYKTDAG ENPNVFSLSP VEKNQLTIDF IDIVKDPVPP BACU013649/1-1116 CPFVEKFSID IETFYKTDAG ENPNVFSLSP VEKNQLTIDF IDIVKDPVPP bmy_01467T0/1-1124 CPFVEKFSID IETFYKTDAG ENPNVFSLSP VEKNQLTIDF IDIVKDPVPP 151 200 ENSP00000322218/1-1349 NEYKTEEDPK LFQSTKTQRG PLSENWIEEY KKQVFPIMCA YKLCKVEFRY ENSTTRP00000015044/1-1320 NEYKTEEDPK LFYSTKTQRG PLSENWIEEY KQQVFPIMCA YKLCKVEFRY ENSBTAP00000002094/1-1318 NEYKTEEDPK LFHSTKTQRG PLSENWIEEY KQQVFPIMCA YKLCKVEFRY BACU013649/1-1116 NEYKTEEDPK LFYSTKTQRG PLSENWIEEY KQQVFPIMCA YKLCKVEFRY bmy_01467T0/1-1124 NEYKTEEDPK LFHSTKTQRG PLSENWIEEY KQQVFPIMCA YKLCKVEFRY 201 250 ENSP00000322218/1-1349 WGMQSKIERF IHDTGLRRVM VRAHRQAWCW QDEWYGLSME NIRELEKEAQ ENSTTRP00000015044/1-1320 WGMQSKIERF IHDTGLRKVM VRAHRQAWCW QDEWYGLNME NIRELEKEAQ ENSBTAP00000002094/1-1318 WGMQSKIERF IHDTGLRKVM VRAHRQAWCW QDEWYGLNMD NIRELEKEAQ BACU013649/1-1116 WGMQSKIERF IHDTGLRKVM VRAHRQAWCW QDEWYGLNMD NIRELEKEAQ bmy_01467T0/1-1124 WGMQSKIERF IHDTGLRKVM VRAHRQAWCW QDEWYGLNMD NIRELEKEAQ 251 300 ENSP00000322218/1-1349 LMLSRKMAQF NEDGEEATEL VKHEAVSDQT SGEPPEPSSS NGEPLVGRGL ENSTTRP00000015044/1-1320 LMLSRKMAQF SEDDEGAAEL AKDEAPQAQA PREPPQPSSS GGEPLAGRGL ENSBTAP00000002094/1-1318 LMLSRKMAQF NEEDKGAAEL AKNEAAQDQA SGEPSQPSSS GGEPLAGRGL BACU013649/1-1116 LMLSRKMAQF NEDDKGAAEL AKDEATQDQA PREPPQPSSS GGEPLVGRGL bmy_01467T0/1-1124 LMLSRKMAQF NEDDKGAAEL AKDEATQDQA PREPPQPSSS GGEPLVGRGL 301 350 ENSP00000322218/1-1349 KKQWSTSSKS SRSSKRGASP SRHSISEWRM QSIARDSDES SDDEFFDAHE ENSTTRP00000015044/1-1320 KKQWSTSSKS SRSSKRGASP SRHSISEWRM QSIARDSDES SDDEFFDAHE ENSBTAP00000002094/1-1318 KKQWSTSSKS SRSSKRGASP SRHSISEWRM QSIARDSDES SDDEFFDAHE BACU013649/1-1116 KKQWSTSSKS SRSSKRGASP SRHSISEWRM QSIARDSDES SDDEFFDAHE bmy_01467T0/1-1124 KKQWSTSSKS SRSSKRGASP SRHSISEWRM QSIARDSDES SDDEFFDAHE 351 400 ENSP00000322218/1-1349 DLSDTEEMFP KDITKWSSND LMDKIESPEP EDTQDGLYRQ GAPEFRVASS ENSTTRP00000015044/1-1320 DLSDSEEMFP KDITKWNSND LMDKIESPEP EDTQDGLYRQ SAPEFRVASS ENSBTAP00000002094/1-1318 DLSDSEEMFP KDITKWNSND LMDKIESPEP EDSQDGLYRQ RAPEFRVASS BACU013649/1-1116 DLSDSEEMFP KDITKWNSND LMDKIESPEP EETQDGLYRQ SAPEFRVASS bmy_01467T0/1-1124 DLSDSEEMFP KDITKWNSND LMDKIESPEP EDTQDGLYRQ SAPEFRVASS 401 450 ENSP00000322218/1-1349 VEQLNIIEDE VSQPLAAPPS KIHVLLLVLH GGTILDTGAG DPSSKKGDAN ENSTTRP00000015044/1-1320 VEQLNIIEDE VSPPLAVPPS KIHVLLLLLH GGTILDTGAG DPGSKQGDTN ENSBTAP00000002094/1-1318 VEQLNIIEDE VSPPLAAPPS KIHVLLLLLH GGTILDTGAG DPSSKQGDAN BACU013649/1-1116 VEQLNIIEDE VSPPLAVPPS KIHVLLLLLH GGTILDTGAG DPGSKQGDTN bmy_01467T0/1-1124 VEQLNIIEDE VSPPLAVPPS KIHVLLLLLH GGTILDTGAG DPGSKQGDTN 451 500 ENSP00000322218/1-1349 TIANVFDTVM RVHYPSALGR LAIRLVPCPP VCSDAFALVS NLSPYSHDEG ENSTTRP00000015044/1-1320 TIATVFDTVM RVHYPSALGH LAIRLVPCPP ICSAAFALVS DLSPYSHDEG ENSBTAP00000002094/1-1318 TIATVFDTVM RVHYPSALGH LAIRLVPCPP ICSDAFALVS DLSPYSHDEG BACU013649/1-1116 TIATVFDTVM RVHYPSALGH LAIRLVPCPP ICSAAFALVS DLSPYSHDEG bmy_01467T0/1-1124 TIATVFDTVM RVHYPSALGH LAIRLVPCPP ICSAAFALVS D--------- 501 550 ENSP00000322218/1-1349 CLSSSQDHIP LAALPLLATS SPQYQEAVAT VIQRANLAYG DFIKSQEGMT ENSTTRP00000015044/1-1320 CLSSSQDHIP LAALPLLATS SPHYQEAVAT VIQRANLAYG DFIKSQEGVT ENSBTAP00000002094/1-1318 CLSSSQDHIP LAALPLLATS SPQYQEAVAT VIQRANLAYG DFIKSQEGVT BACU013649/1-1116 CLSSSQDHIP LAALPLLATS SPHYQEAVAT VIQRANLAYG DFIKSQEGVT bmy_01467T0/1-1124 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000322218/1-1349 FNGQVCLIGD CVGGILAFDA LCYSNQPVSE SQSSSRRGSV VSMQDNDLLS ENSTTRP00000015044/1-1320 FNGQVCLIGD CVGGILAFDA LCCSNQTVSE SQSSSRRGSV ASVQDTDLLS ENSBTAP00000002094/1-1318 FNGQVCLIGD CVGGILAFDA LCCSNQPVSE SQSSSRRGSV ASVQDADLLS BACU013649/1-1116 FNGQVCLIGD CVGGILAYDA LCCSNQTASE SQSSSRRGSV ASVQDTDLLS bmy_01467T0/1-1124 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000322218/1-1349 PGILMNAAHC CGGGGGGGGG GGSSGGGGSS GGSSLESSRH LSRSNVDIPR ENSTTRP00000015044/1-1320 PGTTVNAAH- ---------- ---------- -GGTLESSRH LSRSNIDIPR ENSBTAP00000002094/1-1318 PGSTVNTAH- ---------- ---------- -GSNLESSRH LSRSNIDIPR BACU013649/1-1116 PGTTVNAAH- ---------- ---------- -GGNLESSRH LSRSNIDIPR bmy_01467T0/1-1124 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000322218/1-1349 SNGTEDPKRQ LPRKRSDSST YELDTIQQHQ AFLSSLHASV LRTEPCSRHS ENSTTRP00000015044/1-1320 SNGAEDPKQQ LPRKRSDSST YELDTIQQHQ AFLSSLHASV LRNEPSSRHS ENSBTAP00000002094/1-1318 SNGNEDPKRQ LPRKRSDSST YELDTIQQHQ AFLSSLHASV LRNEPSSRRS BACU013649/1-1116 SNGAEDPRQQ LPRKRSDSST YELDTIQQHQ AFLSSLHASV LRNEPSSRRS bmy_01467T0/1-1124 -NGTEDPKQQ LPRKRSDSST YELDTIQQHQ AFLSSLHASV LRNEPSSRRS 701 750 ENSP00000322218/1-1349 SSSTMLDGTG ALGRFDFEIT DLFLFGCPLG LVLALRKTVI PALDVFQLRP ENSTTRP00000015044/1-1320 SSPTMLDGAG AVGKFDFEIA DLFLFGCPLG LVLALRKTVI PSLDVFQLRP ENSBTAP00000002094/1-1318 SSSTMLDGAG AVGKFDFEVA DLFLFGCPLG LVLALRKTVI PSLDVFQLRP BACU013649/1-1116 SSSTMLDGAG AVGKFDFEIA DLFLFGCPLG LVLALRKTVI PSLDVFQLRP bmy_01467T0/1-1124 SSSTMLDGAG AVGKFDFEIA DLFLFGCPLG LVLALRKTVI PSLDVFQLRP 751 800 ENSP00000322218/1-1349 ACQQVYNLFH PADPSASRLE PLLERRFHAL PPFSVPRYQR YPLGDGCSTL ENSTTRP00000015044/1-1320 ACQQVYNLFH PADPSASRLE PLLERRFHAL PPLSIPRYQR YPLGDGCSTL ENSBTAP00000002094/1-1318 ACQQVYNLFH PADPSASRLE PLLERRFHTL PPFSIPRYQR YPLGDGCSTL BACU013649/1-1116 ACQQVYNLFH PADPSASRLE PLLERRFHAL PPLSIPRYQR YPLGDGCSTL bmy_01467T0/1-1124 ACQQVYNLFH PADPSASRLE PLLERRFHAL PPLSIPRYQR YPLGDGCSTL 801 850 ENSP00000322218/1-1349 LADVLQTHNA AFQEHGAPSS PGTAPASRGF RRASEISIAS QVSGMAESYT ENSTTRP00000015044/1-1320 LADALQAHNA VFQEHAAPSS PGTAPTARGF RRASEISIAS QVSGMAESYT ENSBTAP00000002094/1-1318 LAEALQAHNT VFQEHAAPSS PGSAPSTRGF RRASEISIAS QVSGMAESYT BACU013649/1-1116 LADALQAHNA VFQEHAAPSS PGTAPTARGF RRASEISIAS QVSGMAESYT bmy_01467T0/1-1124 LADALQAHNA VFQEHAAPSS PGTAPTARGF RRASEISIAS QVSGMAESYT 851 900 ENSP00000322218/1-1349 ASSIAQKAPD ALSHTPSVRR LSLLALPAPS PTTPGPHPPA RKASPGLERA ENSTTRP00000015044/1-1320 ASSIAQXXXX XXXXXHSVRC PSLLA----- -PTTAHRSLG QQASPSLGRA ENSBTAP00000002094/1-1318 ASGIAQKAPA LLSHTPSVRR LSLLALPHPA PSTLGKR--- -------ERA BACU013649/1-1116 ASSIAQ---- ---------- ---------- ---------- ---------- bmy_01467T0/1-1124 ASSIAQ---- ---------- ---------- ---------- ---------- 901 950 ENSP00000322218/1-1349 PGLPELDIGE VAAKWWGQKR IDYALYCPDA LTAFPTVALP HLFHASYWES ENSTTRP00000015044/1-1320 P-LPNLDIRE VAAKWWGQKR IDYALYCPDA LTAFPTVALP HLFHASYWES ENSBTAP00000002094/1-1318 PRLPDLDISE VAAKWWGQKR IDYALYCPDA LTAFPTVALP HLFHASYWES BACU013649/1-1116 ---------- IAAKWWGQKR IDYALYCPDA LTAFPTVALP HLFHASYWES bmy_01467T0/1-1124 ---------- IAAKWWGQKR IDYALYCPDA LTAFPTVALP HLFHASYWES 951 1000 ENSP00000322218/1-1349 TDVVSFLLRQ VMRHDNSSIL ELDGKEVSVF TPSKPREKWQ RKRTHVKLRN ENSTTRP00000015044/1-1320 TDVVSFLLRQ VMRHDNSSIL ELDGKEVSVF TPSKPREKWQ RKRTHVKLRN ENSBTAP00000002094/1-1318 TDVVSFLLRQ VMRHDNSSIL ELDGKEVSVF TPSKPREKWQ RKRTHVKLRN BACU013649/1-1116 TDVVSFLLXX VMRHDNSSIL ELDGKEVSVF TPSKPREKWQ RKRTHVKLRN bmy_01467T0/1-1124 TDVVSFLLRQ VMRHDNSSIL ELDGKEVSVF TPSKPREKWQ RKRTHVKLRN 1001 1050 ENSP00000322218/1-1349 VTANHRINDA LANEDGPQVL TGRFMYGPLD MVTLTGEKVD VHIMTQPPSG ENSTTRP00000015044/1-1320 VTANHRINDA VANEDGPQVL TGRFMYGPLD MVTLTGEKVD VHIMMQPPSG ENSBTAP00000002094/1-1318 VTANHRINDA VANEDGPQVL TGRFMYGPLD MVTLTGEKVD VHIMMQPPSG BACU013649/1-1116 VTANHRINDA VANEDGPQVL TGRFMYGPLD MVTLTGEKVD VHIMMQPPSG bmy_01467T0/1-1124 VTANHRINDA VANEDGPQVL TGRFMYGPLD MVTLTGEKVD VHIMMQPPSG 1051 1100 ENSP00000322218/1-1349 EWLYLDTLVT NNSGRVSYTI PESHRLGVGV YPIKMVVRGD HTFADSYITV ENSTTRP00000015044/1-1320 EWLYLDTLVT NSSGRVSYTI PETHRLGVGV YPVKMVVRGD HTFADSYITV ENSBTAP00000002094/1-1318 EWLYLDTLVT NSSGRVSYTI PETHRLGVGV YPIKMVVRGD HTFADSYITV BACU013649/1-1116 EWLYLDTLVT NSSGRVSYTI PETHRLGVGV YPVKMVVRGD HTFADSYITV bmy_01467T0/1-1124 EWLYLDTLVT NSSGRVSYTI PETHRLGVGV YPVKMVVRGD HTFADSYITV 1101 1150 ENSP00000322218/1-1349 LPKGTEFVVF SIDGSFAASV SIMGSDPKVR AGAVDVVRHW QDLGYLIIYV ENSTTRP00000015044/1-1320 LPKGTEFVVF SIDGSFAASV SIMGSDPKVR AGAVDVVRHW QDLGYLIIYV ENSBTAP00000002094/1-1318 LPKGTEFVVF SIDGSFAASV SIMGSDPKVR AGAVDVVRHW QDLGYLIIYV BACU013649/1-1116 LPKGTEFVVF SIDGSFAASV SIMGSDPKVR AGAVDVVRHW QDLGYLIIYV bmy_01467T0/1-1124 LPKGTEFVVF SIDGSFAASV SIMGSDPKVR AGAVDVVRHW QDLGYLIIYV 1151 1200 ENSP00000322218/1-1349 TGRPDMQKQR VVAWLAQHNF PHGVVSFCDG LVHDPLRHKA NFLKLLISEL ENSTTRP00000015044/1-1320 TGRPDMQKQR VVAWLAQHNF PHGVVSFCDG LVHDPLRHKA NFLKLLISEL ENSBTAP00000002094/1-1318 TGRPDMQKQR VVAWLAQHNF PHGVVSFCDG LVHDPLRHKA NFLKLLISEL BACU013649/1-1116 TGRPDMQKQR VVAWLAQHNF PHGVVSFCDG LVHDPLRHKA NFLKLLISEL bmy_01467T0/1-1124 TGRPDMQKQR VVAWLAQHNF PHGVVSFCDG LVHDPLRHKA NFLKLLISEL 1201 1250 ENSP00000322218/1-1349 HLRVHAAYGS TKDVAVYSAI SLSPMQIYIV GRPTKKLQQQ CQFITDGYAA ENSTTRP00000015044/1-1320 HLRVHAAYGS TKDVAVYSSI SLSPMQIYIV GRPTKKLQQQ CQFITDGYAA ENSBTAP00000002094/1-1318 HLRVHAAYGS TKDVAVYSSI SLSPMQIYIV GRPTKKLQQQ CQFITDGYAA BACU013649/1-1116 HLRVHAAYGS TKDVAVYSSI SLSPMQIYIV GRPTKKLQQQ CQ------VC bmy_01467T0/1-1124 HLRVHAAYGS TKDVAVYSSI SLSPMQIYIV GRPTKKLQQQ CQFITDGYAA 1251 1300 ENSP00000322218/1-1349 HLAQLKYSHR ARPARNTATR MALRKGSFGL PGQGDFLRSR NHLLRTISAQ ENSTTRP00000015044/1-1320 HLAQLKYNHR ARPARNAATR MALRKGSFGL PGQGDFLRSR NHLLRTISAQ ENSBTAP00000002094/1-1318 HLAQLKYNHR ARPARNAATR MALRKGSFGL PGQGDFLRSR NHLLRTISAQ BACU013649/1-1116 FLASLKIP-- ---------- -------FG- ---------- -----TLSS- bmy_01467T0/1-1124 HLAQLKYNHR ARPARNAATR MALRKGSFGL PGQGDFLRSR NHLLRTISAQ 1301 1350 ENSP00000322218/1-1349 PSGPSHR-HE RTQSQADGEQ RGQRSMSVAA GCWGRAMTGR LEPGAAAGPK ENSTTRP00000015044/1-1320 PSGPGHR-HE RTQSQADSEQ RGQRSMSMAA GCWGRAMAGR PEPGTAAGPK ENSBTAP00000002094/1-1318 PSGPGPRPHE RTQSQADSEQ RGQRSMSMAA GCWGRTLAGR PEPGPAAGPK BACU013649/1-1116 ---------- ---------- ---------- ---------- ---------- bmy_01467T0/1-1124 PSGPGHR-HE RTQSQADGEQ RGQRSMSVAA GCWGRAMAGR PEPGAAAGPK