KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:25 2014 Check: 00 .. Name: ENSP00000379111/1-825 Len: 828 Check: 7168 Weight: 1.00 Name: ENSBTAP00000002098/1-808 Len: 828 Check: 4419 Weight: 1.00 Name: ENSTTRP00000009036/1-805 Len: 828 Check: 5940 Weight: 1.00 Name: bmy_00812T0/1-642 Len: 828 Check: 4970 Weight: 1.00 Name: BACU011884/1-820 Len: 828 Check: 5207 Weight: 1.00 // 1 50 ENSP00000379111/1-825 MGWLCSGLLF PVSCLVLLQV ASSGNMKVLQ EPTCVSDYMS ISTCEWKMNG ENSBTAP00000002098/1-808 MGRLLSVLMF PVSCLILLWV AGSGSMRVLQ DPTCFSDYIS NSTCEWEMAG ENSTTRP00000009036/1-805 MGWLHSGLTF SVGCLILVWA AGCGSVRVVQ GPTCFSDYVN ISTCEWEMAR bmy_00812T0/1-642 MGWLHSGLTF SVGCLILMWA AGSGSVRVLQ GPTCFSDYVN ISTCEWEMAR BACU011884/1-820 MAWLHSGLAF SVGCLILMWA AGSGSVRVLQ GPTCFSDYIN ISTCEWEMAQ 51 100 ENSP00000379111/1-825 PTNCSTELRL LYQLVFLLSE AHTCIPENNG GAG---CVCH LLMDDVVSAD ENSBTAP00000002098/1-808 PTNCRAELHL SYQLNFYYSE NHTCVPENRA GVGGTVCICH MLTENPVRQD ENSTTRP00000009036/1-805 PTNCRAELRL FYQLKFFYFE NHTCVPENRA GAV---CVCH MHMDNVVSVD bmy_00812T0/1-642 PTNCRAELRL FYQLEFFSFE NHTCVPENRA GAV---CVCH MHMDNVVSAD BACU011884/1-820 PTNCRAELRL FYQLEFFSFE NHMCVPENRA GAV---CVCH MHMDNVVSAD 101 150 ENSP00000379111/1-825 NYTLDLWAGQ QLLWKGSFKP SEHVKPRAPG NLTVHTNVSD TLLLTWSNPY ENSBTAP00000002098/1-808 IYQLDLWAGK QLLWNSSFKP SEHVKPPAPR NLTVHADISH TWLLTWNNPY ENSTTRP00000009036/1-805 TYQLDLWAGE QLLWKSAFKP SEHVKPLAPR NLTVHANISR TWLLTWNNPY bmy_00812T0/1-642 TYQLDLWAGE QLLWKSSFKP SEHVKPLAPR NLTVHANTSR TWLLTWNNPY BACU011884/1-820 TYQLDLWAGE QLLWKSSFKP SEHVKPLAPR NLTVHPNTSR TWLLTWNNPY 151 200 ENSP00000379111/1-825 PPDNYLYNHL TYAVNIWSEN DPADFRIYNV TYLEPSLRIA ASTLKSGISY ENSBTAP00000002098/1-808 PSDNLLYSEL TYLVNISNEN DPTDFRTYNV TYMGPTLRVA ASTLRSGASY ENSTTRP00000009036/1-805 PPENHLYSEL TYLINISNEN DPTDFRIYNV TY-GPTLRFA ASTLKSGASY bmy_00812T0/1-642 PPENHLYSEL TYLVNISNEN DPTDFRIYNV TYMGPTLRFA ASTLKSGASY BACU011884/1-820 PPENHLYSEL TYLVNISNEN DPTDFRIYNV TYMGPTLRFA ASTLKSGASY 201 250 ENSP00000379111/1-825 RARVRAWAQC YNTTWSEWSP STKWHNSYRE PFEQHLLLGV SVSCIVILAV ENSBTAP00000002098/1-808 SARVKAWAQS YNSSWSAWSP STKWLNYYED TWEQRLQLGV GISCVIVLAV ENSTTRP00000009036/1-805 SAQVKAWAQS YNST-SEWSP SAK--DYYEA TLEQRLPLGV SISCVIILAV bmy_00812T0/1-642 SAQ------- ---------- ---------A TLEQRLPLGV SISCVVILAV BACU011884/1-820 SAQVKAWAQS YNSTWSEWSP SVKWLNYYEA TLEQRLPLGV SISCVVILAV 251 300 ENSP00000379111/1-825 CLLCYVSITK IKKEWWDQIP NPARSRLVAI IIQDAQGSQW EKRSRGQEPA ENSBTAP00000002098/1-808 CVSCYISIIK IKKEWWDQIP NPAHSPLVAV VIQDSQVSLW RKRSRGQEPA ENSTTRP00000009036/1-805 CLSCYVSIIK IKKEWWDQIP NPAHXXXXXX XXXXXXVSLW GKRSQGQEPA bmy_00812T0/1-642 CLSCYVSIIK IKKEWWDQIP NPAHSPLVAV VIQDSQVSLW GKRSQGQEPA BACU011884/1-820 CLSCYVSIIK IKKEWWDQIP NPAHSPLVAV IIQDSQVSLW GKRSQGQEPA 301 350 ENSP00000379111/1-825 KCPHWKNCLT KLLPCFLEHN MKRDEDPHKA AKEMPFQGSG KSAWCPVEIS ENSBTAP00000002098/1-808 KCPHWKTCLA KLLPCLLEHG MERDDDFSKA ARNGPSQGSG KVAWCPVEVS ENSTTRP00000009036/1-805 KCPHWKTCLA KLLPCLLEHG MERDEDSSKA ARNEPFQCPG KVAWHPMEVN bmy_00812T0/1-642 KCP------- ---------- ---------- ---------- ---------- BACU011884/1-820 KCPHWKTCLA KLLPCLLEHG MERDEDSSKP ARNEPFQCPG KVAWHPMEVN 351 400 ENSP00000379111/1-825 KTVLWPESIS VVRCVELFEA PVECEEEEEV EEEKGSFCAS PESSRDDFQE ENSBTAP00000002098/1-808 KTILRPESIS VVRCVELFEA QVE-KEEEEV EEDKGSFCPS PENSGGLFQE ENSTTRP00000009036/1-805 KTVLWPESIS LVRCVELFEA QVE-NEEEEV EEDKGSFCPS PDSSGGSFQE bmy_00812T0/1-642 ---------- ---------- ---------- ---------- ---------- BACU011884/1-820 KTILWPESIS LVRCVELFEA QVE-NEEEEV EEDKGSFCPS PDSSGGSFQE 401 450 ENSP00000379111/1-825 GREGIVARLT ESLFLDLLGE ENGGFCQQDM GESCLLPPSG STSAHMPWDE ENSBTAP00000002098/1-808 GREDIAARLT ESLFLHLLRD ETGGFSPQGV -ESCLLPPLE NANAQRPWAE ENSTTRP00000009036/1-805 GREGIAARLT ESLFLDLLGG EVGGFSPQGL EESCLLPPLE NPSVQRPWAT bmy_00812T0/1-642 ---------- ---------G EDGGFSPQGL EESCLLPPLE NPSAQRPWAT BACU011884/1-820 GREGIAARLT ESLFLDLLGG EDGGFSPQGL EESCLLPPLE NPSAQRPWAT 451 500 ENSP00000379111/1-825 FPSAGPKEAP PWGKEQPLHL EPSPPASPTQ SPDNLTCTET PLVIAGNPAY ENSBTAP00000002098/1-808 FPRVEPQEAS SEDKEQPLSP ESSPPGTPTQ NPAGLPLPEM PTIISDNPAY ENSTTRP00000009036/1-805 SPSVGPQEAS SEDKE-PLNP ESSP---PTQ SPARLAFPEM PGVIADNPTY bmy_00812T0/1-642 FPSVGPQEAS SEDKE-PLNP ESSP---PTQ SPARLAFPEM PGVITDYPTC BACU011884/1-820 FPSVGPQEAS SEDKE-PLNP ESSP---PTQ SPARLAFPEM PGVITDYPTC 501 550 ENSP00000379111/1-825 RSFSNSLSQS PCPRELGPDP LLARHLEEVE PEMPCVPQLS EPTTVPQPEP ENSBTAP00000002098/1-808 RSFSTFLSQS SGPGELDSDP QLAECLGEVD PNIPTTP--- ------KPEP ENSTTRP00000009036/1-805 RNFSTFLSQS SGPGELDSDP QLAEHLGEV- ------PQHA AP----QPEP bmy_00812T0/1-642 RSFSTFLRQS SGPGGLDSDP QLAEHLGEAD PGIPAAPQQS APPATLQPEP BACU011884/1-820 RSFSTFLSQS SGPGELDSDP QLAEHLGEVD PGIPAAPQQS ALPAALQPEP 551 600 ENSP00000379111/1-825 ETWEQILRRN VLQHGAAAAP VSAPTSGYQE FVHAVEQGGT QASAVVGLGP ENSBTAP00000002098/1-808 ETWEQILRQR VLQHRAAPGP ASAPSSGYRE FVQAVKEGGT QDSGPAGFGP ENSTTRP00000009036/1-805 ETWEQILRQS VLQCRAAPGP ASAPSSGYRE FVQAVKQGGA RDSGLEGFGP bmy_00812T0/1-642 ETWEQILRQS VLQCRAAPGP ASAPSSGYRE FVQPVKQGGA QDSGLEGFGP BACU011884/1-820 ETWEQILRQS VLQCRAAPGP ASAPSSGYRE FVQAVKQGGA QDSGLEGFGP 601 650 ENSP00000379111/1-825 PGEAGYKAFS SLLASSAVSP EKCGFGASSG EEGYKPFQDL IPGCPGDPAP ENSBTAP00000002098/1-808 SEEAGYKAFS SLLASSDSCP ATSGVDPSSG EGGYKPFQSL ASGCPRTPSP ENSTTRP00000009036/1-805 CGEAGYKAFS SVLTXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00812T0/1-642 CGEAGYKAFS SLLAGSASCP GTSGVEPSSG EGGYKPFQSL TPGCPGAPAP BACU011884/1-820 CGEAGYKAFS SLLAGSASCP GTSGVEPSSG EGGYKPFQSL APGCPGAPAP 651 700 ENSP00000379111/1-825 VPVPLFTFGL DREPPRSPQS SHLPSSSPEH LGLEPGEKVE DMPKPPLPQE ENSBTAP00000002098/1-808 TPVPLFTFGL DMDPPHSPQD S-------EW PELEPAVKGD DGQKPLFAPV ENSTTRP00000009036/1-805 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLSPE bmy_00812T0/1-642 VPVPLFTFGL DVEPPHSPQD SLLPGSTPEC PGLEPVVKGE DSQKPPLSPE BACU011884/1-820 VSVPLFTFGL DVEPPYSPHD SLLPGSTPGC PGLEPVVKGE DSQKPPLSPE 701 750 ENSP00000379111/1-825 QATDPLVDSL GSGIVYSALT CHLCGHLKQC HGQEDGGQTP VMASPCCGCC ENSBTAP00000002098/1-808 PVTDPLRDDL GNGIIYSALT CHLCGHLKQC HGQEEAGKAQ IVVSPCCGCC ENSTTRP00000009036/1-805 PTTDPPGDDL GNGIVYSALT CHLCGHLKQC HGQEERGKAH IEASPCCGCC bmy_00812T0/1-642 PATDPLRDDL GNGIVYSALT CHLCGHLKQC HGQEERGKAH VEASPCCGCC BACU011884/1-820 PATDPLGDDL GNGIVYSALT CHLCGHLKQC HGQEERGKAH VEASPCCDCC 751 800 ENSP00000379111/1-825 CGDRSSPPTT PLRAPDPSPG GVPLEASLCP ASLAPSGISE KSKSSSSFHP ENSBTAP00000002098/1-808 CGDRSSPLLS PLKAPDSLPQ GTPLAASLSA ASLAPLGVSE EGKCPLF--N ENSTTRP00000009036/1-805 RGDGSSPPVS PLRALDTQLG GAPLEASLSP ASLAPLGVSE EGKSPLFFQT bmy_00812T0/1-642 RGDGSSPPVS PLRALDAQLG GAPLEASLSP ASLAPLGVSE E--------- BACU011884/1-820 RGDGSSPPVS PLRALDAQLG GAPLEASLSP ASLAPLGVSE EGKPALFFQT 801 850 ENSP00000379111/1-825 APGNAQSSSQ TPKIVNFVSV GPTYMRVS ENSBTAP00000002098/1-808 APSHAQSSGQ APAVTAVPSP GPTCMDAS ENSTTRP00000009036/1-805 APNNAQSSSQ TSTVVAMLSP EPTCTDAS bmy_00812T0/1-642 ---------- ---------- -------- BACU011884/1-820 APNNAQSSSQ TSTVVAMLSP GPTCTDAS