KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:26 2014 Check: 00 .. Name: ENSP00000358142/1-742 Len: 742 Check: 6176 Weight: 1.00 Name: ENSBTAP00000002101/1-742 Len: 742 Check: 5431 Weight: 1.00 Name: ENSTTRP00000004896/1-681 Len: 742 Check: 6894 Weight: 1.00 Name: bmy_19729T0/1-725 Len: 742 Check: 2529 Weight: 1.00 Name: BACU007215/1-742 Len: 742 Check: 5250 Weight: 1.00 // 1 50 ENSP00000358142/1-742 MEEGFRDRAA FIRGAKDIAK EVKKHAAKKV VKGLDRVQDE YSRRSYSRFE ENSBTAP00000002101/1-742 MEEGFRDRAA FIRGAKDIAK EVKKHATKKV VKGLDRVQDE YSRRSYSRFE ENSTTRP00000004896/1-681 MEEGFRDRAA FIRGAKDIAK EVKKHAAKKV VKGLDRVQDE YSRRSYSRFE bmy_19729T0/1-725 MEEGFRDRAA FIRGAKDIAK EVKKHAAKKV VKGLDRVQDE YSRRSYSRFE BACU007215/1-742 MEEGFRDRAA FIRGAKDIAK EVKKHAAKKV VKGLDRVQDE YSRRSYSRFE 51 100 ENSP00000358142/1-742 EEDDDDDFPA PSDGYYRGEG TQDEEEGGAS SDATEGHDED DEIYEGEYQG ENSBTAP00000002101/1-742 EEDDDDDFPA PADGYYRGEG AQDEEEGGAS SDATEGHDED DEIYEGEYQG ENSTTRP00000004896/1-681 EEDDDDDFPA TADGYYRGEG AQDEEEGGAS SDATEGHDED DEIYEGEYQG bmy_19729T0/1-725 EEDDDDDFPA SADGYYRGEG AQDEEEGGAS SDATEGHDED DEIYEGEYQG BACU007215/1-742 EEDDDDDFPA SADGYYRGEG AQDEEEGGAS SDATEGHDED DEIYEGEYQG 101 150 ENSP00000358142/1-742 IPRAESGGKG ERMADGAPLA GVRGGLSDGE GPPGGRGEAQ RRKEREELAQ ENSBTAP00000002101/1-742 IPRAESGGKG ERMADGAPLA GVRGGLGDGE GPPGGRGEAQ RRKEREELAQ ENSTTRP00000004896/1-681 IPRAESGGKG ERMADGAPLA GVRGGLGDGE GPPGGRGEAQ RRKEREELAQ bmy_19729T0/1-725 IPRAESGGKG ERMADGAPLA GVRGGLGDRE GPPGGRGEAQ RRKEREELAQ BACU007215/1-742 IPRAESGGKG ERMADGATLA GVRGGLGDGE GPPGGRGEAQ RRKEREELAQ 151 200 ENSP00000358142/1-742 QYEAILRECG HGRFQWTLYF VLGLALMADG VEVFVVGFVL PSAEKDMCLS ENSBTAP00000002101/1-742 QYEAILRECG HGRFQWTLYF VLGLALMADG VEVFVVGFVL PSAEKDMCLS ENSTTRP00000004896/1-681 QYEAILRECG HGRFQWTLYF VLGLALMADG VEVFVVGFVL PSAEKDMCLS bmy_19729T0/1-725 QYEAILRECG HGRFQWTLYF VLGLALMADG VEVFVVGFVL PSAEKDMCLS BACU007215/1-742 QYEAILRECG HGRFQWTLYF VLGLALMADG VEVFVVGFVL PSAEKDMCLS 201 250 ENSP00000358142/1-742 DSNKGMLGLI VYLGMMVGAF LWGGLADRLG RRQCLLISLS VNSVFAFFSS ENSBTAP00000002101/1-742 DSNKGMLGLI VYLGMMVGAF LWGGLADRLG RRQCLLISLS VNSVFAFFSS ENSTTRP00000004896/1-681 DSNKGMLGLI VYLGMMVGAF LWGGLADRLG RRQCLLISLS VNSVFAFFSS bmy_19729T0/1-725 DSNKGMLGLI VYLGMMVGAF LWGGLADRLG RRQCLLISLS VNSVFAFFSS BACU007215/1-742 DSNKGMLGLI VYLGMMVGAF LWGGLADRLG RRQCLLISLS VNSVFAFFSS 251 300 ENSP00000358142/1-742 FVQGYGTFLF CRLLSGVGIG GSIPIVFSYF SEFLAQEKRG EHLSWLCMFW ENSBTAP00000002101/1-742 FVQGYGTFLF CRLLSGVGIG GSIPIVFSYF SEFLAQEKRG EHLSWLCMFW ENSTTRP00000004896/1-681 FVQGYGTFLF CRLLSGVGIG GSIPIVFSYF SEFLAQEKRG EHLSWLCMFW bmy_19729T0/1-725 FVQ------- ---------- GSIPIVFSYF SEFLAQEKRG EHLSWLCMFW BACU007215/1-742 FVQGYGTFLF CRLLSGVGIG GSIPIVFSYF SEFLAQEKRG EHLSWLCMFW 301 350 ENSP00000358142/1-742 MIGGVYAAAM AWAIIPHYGW SFQMGSAYQF HSWRVFVLVC AFPSVFAIGA ENSBTAP00000002101/1-742 MIGGVYAAAM AWAIIPHYGW SFQMGSAYQF HSWRVFVLVC AFPSVFAIGA ENSTTRP00000004896/1-681 MIGGVYAAAM AWAIIPHYGW SFQMGSAYQF HSWRVFVLVC AFPSVFAIGA bmy_19729T0/1-725 MIGGVYAAAM AWAIIPHYGW SFQMGSAYQF HSWRVFVLVC AFPSVFAIGA BACU007215/1-742 MIGGVYAAAM AWAIIPHYGW SFQMGSAYQF HSWRVFVLVC AFPSVFAIGA 351 400 ENSP00000358142/1-742 LTTQPESPRF FLENGKHDEA WMVLKQVHDT NMRAKGHPER VFSVTHIKTI ENSBTAP00000002101/1-742 LTTQPESPRF FLENGKHDEA WMVLKQVHDT NMRAKGHPER VFSVTHIKTI ENSTTRP00000004896/1-681 LTTQPESPRF FLENGKHDEA WMVLKQVHDT NMRAKGHPER VFSVTHIKTI bmy_19729T0/1-725 LTTQPESPRF FLENGKHDEA WMVLKQVHDT NMRAKGHPER VFSVTHIKTI BACU007215/1-742 LTTQPESPRF FLENGKHDEA WMVLKQVHDT NMRAKGHPER VFSVTHIKTI 401 450 ENSP00000358142/1-742 HQEDELIEIQ SDTGTWYQRW GVRALSLGGQ VWGNFLSCFG PEYRRITLMM ENSBTAP00000002101/1-742 HQEDELIEIQ SDTGAWYQRW GVRALSLGGQ VWGNFLSCFG PEYRRITLMM ENSTTRP00000004896/1-681 HQEEELIEIQ SDTGTWYQRW GVRALSLGGQ VWGNFLSCFG PEYRRITLMM bmy_19729T0/1-725 HQEDELIEIQ SDTGTWYQRW GVRALSLGGQ VWGNFLSCFG PEYRRITLMM BACU007215/1-742 HQEDELIEIQ SDTGTWYQRW GVRALSLGGQ VWGNFLSCFG PEYRRITLMM 451 500 ENSP00000358142/1-742 MGVWFTMSFS YYGLTVWFPD MIRHLQAVDY ASRTKVFPGE RVEHVTFNFT ENSBTAP00000002101/1-742 MGVWFTMSFS YYGLTVWFPD MIRHLQAVDY AARTKVFPGE RVEHVTFNFT ENSTTRP00000004896/1-681 MGVWFTMSFS YYGLTVWFPD MIRHLQAVDY AARTKVFPGE RVEHVTFNFT bmy_19729T0/1-725 MGVWFTMSFS YYGLTVWFPD MIRHLQAVDY AARTKVFPGE RVEHVTFNFT BACU007215/1-742 MGVWFTMSFS YYGLTVWFPD MIRHLQAVDY AARTKVFPGE RVEHVTFNFT 501 550 ENSP00000358142/1-742 LENQIHRGGQ YFNDKFIGLR LKSVSFEDSL FEECYFEDVT SSNTFFRNCT ENSBTAP00000002101/1-742 LENQIHRGGQ YFNDKFIGLR LKSVSFEDSL FEECYFEDVT SSNTFFRNCT ENSTTRP00000004896/1-681 LENQIHRGGQ YFNDKFIGLR LKSVSFEDSL FEECYFEDVT SSNTFFRNCT bmy_19729T0/1-725 LENQIHRGGQ YFNDKFIGLR LKSVSFEDSL FEECYFEDVT SSNTFFRNCT BACU007215/1-742 LENQIHRGGQ YFNDKFIGLR LKSVSFEDSL FEECYFEDVT SSNTFFRNCT 551 600 ENSP00000358142/1-742 FINTVFYNTD LFEYKFVNSR LINSTFLHNK EGCPLDVTGT GEGAYMVYFV ENSBTAP00000002101/1-742 FINTVFYNTD LFEYKFVNSR LVNSTFLHNK EGCPLDVTGT GEGAYMVYFV ENSTTRP00000004896/1-681 FINTVFYNTD LFEYKFVNSR LVNSTFLHNK EGCPLDVTGT GEGAYMVYFV bmy_19729T0/1-725 FINTVFYNTD LFEYKFVNSR LVNSTFLHNK EGCPLDVTGT GEGAYMVYFV BACU007215/1-742 FINTVFYNTD LFEYKFVNSR LVNSTFLHNK EGCPLDVTGT GEGAYMVYFV 601 650 ENSP00000358142/1-742 SFLGTLAVLP GNIVSALLMD KIGRLRMLAG SSVMSCVSCF FLSFGNSESA ENSBTAP00000002101/1-742 SFLGTLAVLP GNIVSALLMD KIGRLRMLAG SSVMSCVSCF FLSFGNSESA ENSTTRP00000004896/1-681 SFLGTLAVLP GNIVSALLMD KIGRLRMLAG SSVMSCVSCF FLSFGNSESA bmy_19729T0/1-725 SFLGTLAVLP GNIVSALLMD KIGRLRMLAG SSVMSCVSCF FLSFGNSESA BACU007215/1-742 SFLGTLAVLP GNIVSALLMD KIGRLRMLAG SSVMSCVSCF FLSFGNSESA 651 700 ENSP00000358142/1-742 MIALLCLFGG VSIASWNALD VLTVELYPSD KRTTAFGFLN ALCKLAAVLG ENSBTAP00000002101/1-742 MIALLCLFGG VSIASWNALD VLTVELYPSD KRTTAFGFLN ALCKLAAVLG ENSTTRP00000004896/1-681 MIALLCLFGG VSIASWNALD VLTVELYPSD K--------- ---------- bmy_19729T0/1-725 MIALLCLFGG VSIASWNALD VLTVELYPSD KRTTAFGFLN ALCKLAAVLG BACU007215/1-742 MIALLCLFGG VSIASWNALD VLTVELYPSD KRTTAFGFLN ALCKLAAVLG 701 750 ENSP00000358142/1-742 ISIFTSFVGI TKAAPILFAS AALALGSSLA LKLPETRGQV LQ ENSBTAP00000002101/1-742 ISIFTSFVGI TKAAPILFAS AALALGSSLA LKLPETRGQV LQ ENSTTRP00000004896/1-681 ---------- ---------- ---------- ---------- -- bmy_19729T0/1-725 ISIFTSFVGI TKAAPILFAS AALALGSSLA LKLPETRGQV LQ BACU007215/1-742 ISIFTSFVGI TKAAPILFAS AALALGSSLA LKLPETRGQV LQ