KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:29 2014 Check: 00 .. Name: ENSBTAP00000002120/1-1265 Len: 1295 Check: 999 Weight: 1.00 Name: ENSP00000299927/1-1267 Len: 1295 Check: 3186 Weight: 1.00 Name: ENSTTRP00000014504/1-1223 Len: 1295 Check: 1643 Weight: 1.00 Name: bmy_10353T0/1-754 Len: 1295 Check: 5345 Weight: 1.00 Name: BACU016060/1-1285 Len: 1295 Check: 124 Weight: 1.00 // 1 50 ENSBTAP00000002120/1-1265 ---------- ---------- MGDMKTPDFD DLLAAFDIPD PTSLDAKEAI ENSP00000299927/1-1267 ---------- ---------- MGDMKTPDFD DLLAAFDIPD PTSLDAKEAI ENSTTRP00000014504/1-1223 ---------- ---------- MGDMKTPDFD DLLAAFDIPD PTSLDAKEAI bmy_10353T0/1-754 ---------- ---------- MGDMKTPDFD DLLAAFDIPD PTSLDAKEAI BACU016060/1-1285 MSPAFWKPVG VKLSPCQHPA MGDMKTPDFD DLLAAFDIPD PTSLDAKEAI 51 100 ENSBTAP00000002120/1-1265 QTPSEENESP LKPPGLCVDE NVSLSHSGSA SDVPAVSVIV KNTSRQESFE ENSP00000299927/1-1267 QTPSEENESP LKPPGICMDE SVSLSHSGSA PDVPAVSVIV KNTSRQESFE ENSTTRP00000014504/1-1223 QTPSEENESP LKPPGMCMDE NVSLSHSGSA SDVPAVSVIV KNTSRQESFE bmy_10353T0/1-754 QTPSEENESP LKPPGMCMDE NVSLSHSGSA SDVPAVSVIV KNTSRQESFE BACU016060/1-1285 QTPSEENESP LKPPGMCMDE NVSLSHSGSA SDVPAVSVIV KNTSRQESFE 101 150 ENSBTAP00000002120/1-1265 AEKDHIAPSL LHNGFRGSDL PADPHSLGHN CGKFDSTFMN GDSTRGFPGK ENSP00000299927/1-1267 AEKDHITPSL LHNGFRGSDL PPDP----HN CGKFDSTFMN GDSARSFPGK ENSTTRP00000014504/1-1223 AEKDHVAPSL LHNGFRGSDL PPDPHNLGHN CGKFDSTFMN GDSTRSFPGK bmy_10353T0/1-754 AEKDHVAPSL LHNGFRGSDL PPDPHNLGHN CGKFDSTFMN GDSTRSFASK BACU016060/1-1285 AEKDHVAPSL LHNGFRGSDL PPDPHNLGHN CGKFDSTFMN GDSTRSFASK 151 200 ENSBTAP00000002120/1-1265 LEASKSEPLP TFNQFSPISS PEPEDAIKDN GFGMKPKHSD SYFPPPPGCG ENSP00000299927/1-1267 LEPPKSEPLP TFNQFSPISS PEPEDPIKDN GFGIKPKHSD SYFPPPLGCG ENSTTRP00000014504/1-1223 LEPSKSEPLP TFNQFSPISS PEPEDAIKDN GFGIKPKHAD SYFPPPPGCE bmy_10353T0/1-754 LEPSKSEPLP TFNQFSPISS PEPEDAIKDN GFGIKPKHSD SYFPPPPGCE BACU016060/1-1285 LEPSKSEPLP TFNQFSPISS PEPEDAIKDN GFGIKPKHSD SYFPPPPGCE 201 250 ENSBTAP00000002120/1-1265 SVGGPVLEAL TKFPVPELHM FDHFCKKEPK PEPLPLGSPQ EHERGGQKAL ENSP00000299927/1-1267 AVGGPVLEAL AKFPVPELHM FDHFCKKEPK PEPLPLGSQQ EHEQSGQNTV ENSTTRP00000014504/1-1223 SVGGPVLEAL TKFPVPELHM FDHFCKKEPK PEPLPLGSQQ EHEQGGQKAV bmy_10353T0/1-754 SVGGPVLEAL TKFPVPELHM FDHFCKKEPK PEPLPLGSQQ EDEQGGQKAV BACU016060/1-1285 SVGGPVLEAL TKFPVPELHM FDHFCKKEPK PEPLPMGSQQ EDEQGGQKAV 251 300 ENSBTAP00000002120/1-1265 EVHKELDASR FFGDALDFSS HPGNSIGEPK GLASELGTGS AFPPRQRLKP ENSP00000299927/1-1267 EPHKDPDATR FFGEALEFNS HPSNSIGESK GLARELGTCS SVPPRQRLKP ENSTTRP00000014504/1-1223 EPHKELDTSR FFGEALEFNS HPGHSIGEPN GLASELGTCS SVPPMQRLKP bmy_10353T0/1-754 EPHKELDTSR FFGEALEFNS HPGNSIGEPK GLASELGTCS SVPPRQRLKP BACU016060/1-1285 EPHKELDTSR FFGEALEFNS HPGNSIGEPK GLASELGTCS SVPPRQRLKP 301 350 ENSBTAP00000002120/1-1265 AHSKLSSCVA ALVALQAKRV ANVAKEDQTS HTKDPSGPAK EGSKGSPKMP ENSP00000299927/1-1267 AHSKLSSCVA ALVALQAKRV ASVTKEDQPG HTKDLSGPTK ESSKGSPKMP ENSTTRP00000014504/1-1223 AHSKLSSCVA ALVALQAKRV VSVT-EDQPT HTKDPS-PKE AST--SPKMP bmy_10353T0/1-754 AHSKLSSCVA ALVALQAKRV ASVTKEDQPT HTKDPSGPTK EGSKGSPKMP BACU016060/1-1285 AHSKLSSCVA ALVALQAKRV ASVTKEDQPT HTKDPSGPTK EGSKGSPKMP 351 400 ENSBTAP00000002120/1-1265 KSPKSPRSPL EATRKSIKPS DSPRSICSDS SSKGSPSVAA SSPPAIPKVR ENSP00000299927/1-1267 KSPKSPRSPL EATRKSIKPS DSPRSICSDS SSKGSPSVAA SSPPAIPKVR ENSTTRP00000014504/1-1223 KSSKSPRXX- ---------- ------CSDS SSKG-PSVAA SSPPAFPKVR bmy_10353T0/1-754 KSPKSPRSPL EATRKSIKPS DSPRSICSDS SSKGSPSVAA SSPPAIPKVR BACU016060/1-1285 KSPKSPRSPL EATRKSIKPS DSPRSICSDS SSKGSPSVAA SSPPAIPKVR 401 450 ENSBTAP00000002120/1-1265 IKTIKTSSGE IKRTVTRILP DPDDPSKSPS GSPLGSATAE APSEAPEDEA ENSP00000299927/1-1267 IKTIKTSSGE IKRTVTRILP DPDDPSKSPV GSPLGSAIAE APSEMPGDEV ENSTTRP00000014504/1-1223 IKTIKTSSGE IKRTVTRILP DPDDPSKSPA GSPLGSAIAE APSEVQEDEV bmy_10353T0/1-754 IKTIKTSSGE IKRTVTRILP DPDDPSKSPA GSPLGSAIAE APSEVPEDEV BACU016060/1-1285 IKTIKTSSGE IKRTVTRILP DPDDPSKSPA GSPLGSAIAE APSEVPEDEV 451 500 ENSBTAP00000002120/1-1265 TTLSGVEHFA EVGAQPGSPQ SDRKGEECTA KASEPSPSCF SSGARGQKGA ENSP00000299927/1-1267 PV---EEHFP EAGTNSGSPQ GARKGDESMT KASDSSSPSC SSGPRVPKGA ENSTTRP00000014504/1-1223 TALSGAEHFL EVGTNSGSPQ GDRKGDESMT KASESSTSCC SSGSRGPKGA bmy_10353T0/1-754 TALSGAEHFL EVGTNSGSPQ GDRKGDESMT KASESSTSCC SSGSRGPKGA BACU016060/1-1285 TALSGAEHFL EVGTNSGSPQ GDRKGDESMT KASESSTSCC SSGSRGPKGA 501 550 ENSBTAP00000002120/1-1265 ASGTLEGRKP QQSPAPPASA PAPANLLPKA VHLANLNLVP HSVAASVTAK ENSP00000299927/1-1267 APGSQTGKK- QQSTALQAST LAPANLLPKA VHLANLNLVP HSVAASVTAK ENSTTRP00000014504/1-1223 ASGSQMGKKQ QQSTALQAST LAPANLLPKA VHLANLNLVP HSVAASVTAK bmy_10353T0/1-754 ASGSQMGKKQ QQSTALQAST LAPANLLPKA VHLANLNLVP HSVAASVTAK BACU016060/1-1285 ASGSQMGKKQ QQSTALQAST LAPANLLPKA VHLANLNLVP HSVAASVTAK 551 600 ENSBTAP00000002120/1-1265 SSVQRRSQPQ PTQMSVPLVH QVKKAAPLVL EVFNKVLHSS NPVPLYAPNL ENSP00000299927/1-1267 SSVQRRSQPQ LTQMSVPLVH QVKKAAPLIV EVFNKVLHSS NPVPLYAPNL ENSTTRP00000014504/1-1223 SSAQRRSQPQ LTQMSVPLVH QVKKAAPLVV EVFNKVLHSS NPVPLYAPNL bmy_10353T0/1-754 SSAQRRSQPQ LTQMSVPLVH QVKKAAPLVV EVFNKVLHSS NPVPLYAPNL BACU016060/1-1285 SSAQRRSQPQ LTQMSVPLVH QVKKAAPLVV EVFNKVLHSS NPVPLYAPNL 601 650 ENSBTAP00000002120/1-1265 SPPADSRIHV PASGYCCLEC GDAFALEKSL SQHYGRRSVH IEVLCTLCSQ ENSP00000299927/1-1267 SPPADSRIHV PASGYCCLEC GDAFALEKSL SQHYGRRSVH IEVLCTLCSK ENSTTRP00000014504/1-1223 SPPADSRIHV PASGYCCLEC GDAFALEKSL SQHYGRRSVH IEVLCTLCSQ bmy_10353T0/1-754 SPPADSRIHV PASGYCCLEC GDAFALEKSL SQHYGRRSVH IEVLCTLCSQ BACU016060/1-1285 SPPADSRIHV PASGYCCLEC GDAFALEKSL SQHYGRRSVH IEVLCTLCSQ 651 700 ENSBTAP00000002120/1-1265 TLLFFNKCSL LRHARDHKSK GLVMQCSQLL VKPISADQMF VSTPANSTAP ENSP00000299927/1-1267 TLLFFNKCSL LRHARDHKSK GLVMQCSQLL VKPISADQMF VSAPVNSTAP ENSTTRP00000014504/1-1223 TLLFFNKCSL LRHARDHKSK GLVMQCSQLL VKPISADQMF VSAPANSTAP bmy_10353T0/1-754 TLLFFNKCSL LRHARDHKSK GLVMQCSQLL VKPISADQMF VSAPVNSMAP BACU016060/1-1285 TLLFFNKCSL LRHARDHKSK GLVMQCSQLL VKPISADQMF ASAPVNSMAP 701 750 ENSBTAP00000002120/1-1265 AAAAPPSPSQ PGQASSNAST PLPALPLYPD PVRLIRHSIK CLECHKQMRD ENSP00000299927/1-1267 AAPAPSSSPK HGLTSGSASP PPPALPLYPD PVRLIRYSIK CLECHKQMRD ENSTTRP00000014504/1-1223 ATPAPPSSPK HGLTSSSASP PLPALPLYPD PVRLIRHSIK CLECHKQMRD bmy_10353T0/1-754 ATPAPPSSPK HGLTSSSASP PLPALPLYPD PVRLIRHSIK CLECHKQMRD BACU016060/1-1285 ATPAPPSSPK HGLTSSSASP PLPALPLYPD PVRLIRHSIK CLECHKQMRD 751 800 ENSBTAP00000002120/1-1265 YMAMAAHFQR TTEETEGLTC QVCQMLLPNQ CSFCAHQRIH AHKSPYCCPE ENSP00000299927/1-1267 YMVLAAHFQR TTEETEGLTC QVCQMLLPNQ CSFCAHQRIH AHKSPYCCPE ENSTTRP00000014504/1-1223 YMAMAAHFQR MTEETEGLTC QVCQMLLPNQ CSFCAHQRIH AHKSPYCCPE bmy_10353T0/1-754 YMAMAAHFQR MTEETEGLVS ---------- ---------- ---------- BACU016060/1-1285 YMAMAAHFQR MTEETEGLTC QVCQMLLPNQ CSFCAHQRIH AHKSPYCCPE 801 850 ENSBTAP00000002120/1-1265 CGALCRSAYF QTHVKENCLH YARKVGYRCI HCGVVHLTLA LLKSHIQERH ENSP00000299927/1-1267 CGVLCRSAYF QTHVKENCLH YARKVGYRCI HCGVVHLTLA LLKSHIQERH ENSTTRP00000014504/1-1223 CGALCRSAYF QTHVKENCLH YARKVGYRCI HCGVVHLTLA LLKSHIQERH bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 CGALCRSAYF QTHVKENCLH YARKVGYRCI HCGVVHLTLA LLKSHIQERH 851 900 ENSBTAP00000002120/1-1265 CQVFHKCAFC PMAFKTASST ADHSATQHPT QPHRPSQLIY KCSCEMVFNK ENSP00000299927/1-1267 CQVFHKCAFC PMAFKTASST ADHSATQHPT QPHRPSQLIY KCSCEMVFNK ENSTTRP00000014504/1-1223 CQVFHKCAFC PMASMXT--- ---------- -------LIY KCSCEMVFNK bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 CQVFHKCAFC PMAFKTASST ADHSATQHPT QPHRPSQLIY KCSCEMVFNK 901 950 ENSBTAP00000002120/1-1265 KRHIQQHFYQ NASTAQVGVF KCPECPLLFL QKPELMQHVK STHGVPRNVD ENSP00000299927/1-1267 KRHIQQHFYQ NVSKTQVGVF KCPECPLLFV QKPELMQHVK STHGVPRNVD ENSTTRP00000014504/1-1223 KRHIQQHFYQ NASKAQVGVF KCPECPLLFL QKPELMQHVK STHGVPRNVD bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 KRHIQQHFYQ NASKAQVGVF KCPECPLLFL QKPELMQHVK STHGVPRNVD 951 1000 ENSBTAP00000002120/1-1265 ELSSLQSSAD SSSSRPGPRV PAEPPALSVT ARGSALPSSR WGRPEAHRRA ENSP00000299927/1-1267 ELSSLQSSAD TSSSRPGSRV PTEPPATSVA ARSSSLPSGR WGRPEAHRRV ENSTTRP00000014504/1-1223 ELSSLQSSAD ASSSRPGSRV PTEPPATNVA ARGSSLPSSR WGRPEAHRRG bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 ELSSLQSSAD TSSSRPGSRV PTEPPATNVA ARGSSLPSSR WGRPEAHRRG 1001 1050 ENSBTAP00000002120/1-1265 EARPRLRNTG WTCQECQEWV PDRESYVSHM KKSHGRTLKR YPCRQCEQSF ENSP00000299927/1-1267 EARPRLRNTG WTCQECQEWV PDRESYVSHM KKSHGRTLKR YPCRQCEQSF ENSTTRP00000014504/1-1223 EARPRLRNTG WTCQECQEWV PDRESYVSHM KKSHGRTLKR YPCRQCEQSF bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 EARPRLRNTG WTCQECQEWV PDRESYVSHM KKSHGRTLKR YPCRQCEQSF 1051 1100 ENSBTAP00000002120/1-1265 HTPNSLRKHI RNNHDTVKKV YTCGYCTEDS PSFPRPSLLE SHISLMHGIR ENSP00000299927/1-1267 HTPNSLRKHI RNNHDTVKKF YTCGYCTEDS PSFPRPSLLE SHISLMHGIR ENSTTRP00000014504/1-1223 HTPNSLRKHI RNNHDTVKKV YTCGYCTEDS PSFPRPSLLE SHISLMHGIR bmy_10353T0/1-754 ---------- ---------- ---------- ----RPSL-- ---------- BACU016060/1-1285 HTPNSLRKHI RNNHDTVKKV YTCGYCTEDS PSFPRPSLLE SHISLMHGIR 1101 1150 ENSBTAP00000002120/1-1265 NPDLSQTSKA RPSGGHSPQV NHLKRPVSGV GAAPDTSNGT PVSSTKRHKS ENSP00000299927/1-1267 NPDLSQTSKV KPPGGHSPQV NHLKRPVSGV GDAPGTSNGA TVSSTKRHKS ENSTTRP00000014504/1-1223 NPDLSQTSKV RPSGGHSPQV NHLKRPVSRA GDAPDTSNGA TVSSTKRHKS bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 NPDLSQTSKV RPSGGHSPQV NHLKRPVSGA GDAPDTSNGA TVSSTKRHKS 1151 1200 ENSBTAP00000002120/1-1265 LFQCAKCSFA TDSGLEFQRH IPQHQKDSST AQCLLCGLCY TSAGSLSRHL ENSP00000299927/1-1267 LFQCAKCSFA TDSGLEFQSH IPQHQVDSST AQCLLCGLCY TSASSLSRHL ENSTTRP00000014504/1-1223 LFQCAKCSFA TDSGLEFQSH IPQHQKDSST AQCLLCGLCY TSASSLSRHL bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 LFQCAKCSFA TDSGLEFQSH IPQHQKDSST AQCLLCGLCY TSASSLSRHL 1201 1250 ENSBTAP00000002120/1-1265 FIVHKVRDQE EEE------- ---AEAAEPE EGSGEEVPME TRENGLEESA ENSP00000299927/1-1267 FIVHKVRDQE EEEEEEAAAA EMAVEVAEPE EGSGEEVPME TRENGLEECA ENSTTRP00000014504/1-1223 FIVHKVRDQE EEE------- ---AEAAEPE EGSGEEVSVE TRENGLEECA bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU016060/1-1285 FIVHKVRDQE EEE------- ---AEAAEPE EGSGEEVPVE TRENGLEECA 1251 1300 ENSBTAP00000002120/1-1265 EEPLVGDSET GRSLGLAQDE DGAQDAPSRP QTSQDRDSHT PSPQV ENSP00000299927/1-1267 GEPLSADPEA RRLLGPAPED DGGHNDHSQP QASQDQDSHT LSPQV ENSTTRP00000014504/1-1223 EEPLLGDSEA RRSLGLAPDE DGAQDAQSQP QASQDRDSHT PSPQV bmy_10353T0/1-754 ---------- ---------- ---------- ---------- ----- BACU016060/1-1285 EEPLLGDAEA RRSLGLAPDE DGAQDAQSQP QASQDRDRHT PSPQV