KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:33 2014 Check: 00 .. Name: ENSP00000420863/1-461 Len: 465 Check: 2089 Weight: 1.00 Name: ENSBTAP00000002123/1-461 Len: 465 Check: 4682 Weight: 1.00 Name: ENSTTRP00000007036/1-340 Len: 465 Check: 4691 Weight: 1.00 Name: bmy_17769T0/1-461 Len: 465 Check: 2566 Weight: 1.00 Name: BACU008205/1-248 Len: 465 Check: 1219 Weight: 1.00 // 1 50 ENSP00000420863/1-461 MSAQCCAGQL ACCCGSAGCS LCCDCCPRIR QSLSTRFMYA LYFILVVVLC ENSBTAP00000002123/1-461 --PQCFGGRL ACCCGNAGCS YCCG--PKVR QSRSTRFMYA LYFILVVIIC ENSTTRP00000007036/1-340 ---------L ACCCGNAGCS YCCG-CPKIR QSRSTRFMYA LYFI-VVIIC bmy_17769T0/1-461 MSAQCCAGQL ACCCGNAGCS YCCGCCPKVR QSRSTRFMYA LYFILVVVIC BACU008205/1-248 ---------L ACCCGNAGCS YCCGCCPKIR QSRSTRFMYA LYFILVVVVC 51 100 ENSP00000420863/1-461 CIMMSTTVAH KMKEHIPFFE DMCKGIKAGD TCEKLVGYSA VYRVCFGMAC ENSBTAP00000002123/1-461 CIMMSNTVAN EMREHIPYFE DICKGIKAGD TCEKLVGYSA VYRVCFGMAC ENSTTRP00000007036/1-340 CIMMSNTVAN GMREHIPFFE DICKGIKAGD TCEKLVGYSA VYRVCFGMAC bmy_17769T0/1-461 CIMMSNTVAN EMREHIPFFE DICKGIKAGD TCEKLVGYSA VYRVCFGMAC BACU008205/1-248 CIMMSNTVAN EMREHIPFFE DICKGIKAGD TCEKLVGYSA VYRVCFGMAC 101 150 ENSP00000420863/1-461 FFFIFCLLTL KINNSKSCRA HIHNGFWFFK LLLLGAMCSG AFFIPDQDTF ENSBTAP00000002123/1-461 FFFIFCLLTL NINNSKSCRA YIHNGFWFFK LLLLGAMCSG AFFIPDQETF ENSTTRP00000007036/1-340 FFFIFCLLTL KINNSKSCRA YIHNGFWFFK LLLLGAMCSG AFFIPDQETF bmy_17769T0/1-461 FFFIFCLLTL KINNSKSCRA YIHNGFWFFK LLLLGAMCSG AFFIPDQETF BACU008205/1-248 FFFIFCLLTL KINNSKSCRA YIHNG----- ---------- ---------- 151 200 ENSP00000420863/1-461 LNAWRYVGAV GGFLFIGIQL LLLVEFAHKW NKNW---TAG TASNKLWYAS ENSBTAP00000002123/1-461 LNAWRYVGAV GGFLFIVIQL LLLVEFAHKW NKNWRNRTAG TATNKLWYAS ENSTTRP00000007036/1-340 LNAWRYVGAV GGFLFIGIQL LLLVEFAHKW NKNW---TAG TASNKLWYAS bmy_17769T0/1-461 LNAWRYVGAI GGFLFIGIQL LLLVEFAHKW NKNW---TAG TASNKLWYAS BACU008205/1-248 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000420863/1-461 LALVTLIMYS IATGGLVLMA VFYTQKDSCM ENKILLGVNG GLCLLISLVA ENSBTAP00000002123/1-461 LSLVTLITYS ITTGGLIWMA VFYTQKDGCM ENKILLGVNG GLCLLMSVVS ENSTTRP00000007036/1-340 LSLVTLIMYS IATGGLILMA VFYTQKEGCL ENKILLGVNG GLCLLISVVA bmy_17769T0/1-461 LSLVTLIMYS IATGGLILMA VFYTQKDGCV ENKILLGING GLCLLISAVA BACU008205/1-248 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000420863/1-461 ISPWVQNRQP HSGLLQSGVI SCYVTYLTFS ALSSKPAEV- VLDEHGKNVT ENSBTAP00000002123/1-461 ISPSVRDRQP HSGILQSGLI SCYVTYLTFS ALSSKPAEVE VLDEHGKNVT ENSTTRP00000007036/1-340 ISPCVQDRQP HSGLLQSGLI SCYVTYLTFS ALSSKPVXX- XXXXXXXXXX bmy_17769T0/1-461 ISPCVQNRQP HSGLLQSGLI SCYVTYLTFS ALSSKPVEV- VLDQHGKNVT BACU008205/1-248 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000420863/1-461 ICVPDFGQDL YRDENLVTIL GTSLLIGCIL YSCLTSTTRS SSDALQGRYA ENSBTAP00000002123/1-461 ICVPNFGQDL YRDKTLVAGL GTAILCVCIL YSCLTSTTRS SSDALQGRYT ENSTTRP00000007036/1-340 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLTSTTRS SSDALQGRYA bmy_17769T0/1-461 ICVPDFGQDL YRDKNLVAGL GTTLLCACIL YSCLTSTTRS SSDALQGRYA BACU008205/1-248 ---------- ---------- ---------- ---LTSTTRS SSDALQGRYA 351 400 ENSP00000420863/1-461 APELEIARCC FCFSPGGEDT EEQQPGKEGP RVIYDEKKGT VYIYSYFHFV ENSBTAP00000002123/1-461 APELEVARCC FCFGSGGEDA EEKRNMKEGP RVIYDEKKST VYSYAYFHFM ENSTTRP00000007036/1-340 APDLE----- ---------- ---------- ---------- ---------- bmy_17769T0/1-461 APELEVARCC FCFGSGGEDT EEQQNVKEGP RVIYDEKRST VYSYAYFHFV BACU008205/1-248 APELEVARCC FCFGSGGEDT EEQQNVKEGP RVIYDEKRGT VYSYAYFHFV 401 450 ENSP00000420863/1-461 FFLASLYVMM TVTNWFNYES ANIESFFSGS WSIFWVKMAS CWICVLLYLC ENSBTAP00000002123/1-461 FFLASLYVMM TVTNWFNYES ANIETFFSGS WSIFWVKMAS CWICVLLYLG ENSTTRP00000007036/1-340 ---------- ---------- ---------- ---------- ---------- bmy_17769T0/1-461 FFLASLYVMM TVTNWFNYES ANIETFFSGS WSIFWVKMAS CWICVLLYLG BACU008205/1-248 FFLASLYVMM TVTNWFNYES ANIETFFSGS WSIFWVKMAS CWICVLLYLG 451 500 ENSP00000420863/1-461 TLVAPLCCPT REFSV ENSBTAP00000002123/1-461 TLIAPLCRPS PQYSV ENSTTRP00000007036/1-340 ---------- ----- bmy_17769T0/1-461 TLVAPLCRPS PHFSV BACU008205/1-248 TLVAPLCRPS PHFSV