KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:16:49 2014  Check: 00 ..

 Name: ENSP00000465391/1-149     Len:    151  Check:  1807  Weight:  1.00
 Name: ENSBTAP00000002158/1-149  Len:    151  Check:  1017  Weight:  1.00
 Name: bmy_06698T0/1-104         Len:    151  Check:  1637  Weight:  1.00
 Name: ENSTTRP00000011501/1-76   Len:    151  Check:  2715  Weight:  1.00
 Name: BACU006495/1-95           Len:    151  Check:  9992  Weight:  1.00

//


                          1                                                   50
ENSP00000465391/1-149     --MRYNEKEL QALSRQPAEM AAELGMRGPK KGSVLKRRLV KLVVNFLFYF 
ENSBTAP00000002158/1-149  --MRYNDKEL QALSRQPAEM AAELGMRGPK KGSVVKRRLV KLVVNFLFYF 
bmy_06698T0/1-104         --MRYNEKEL QALSRQPAEM AAELGMRGPK KGS------- ---------- 
ENSTTRP00000011501/1-76   --MRYNEKEL QALSRQPAEM AAELGMRGPK KGSVVKRQLV KLVVNFLFY- 
BACU006495/1-95           PVGALLLEHC RVTQEEPSGF SISF-LEDP- ---------- ---------- 


                          51                                                 100
ENSP00000465391/1-149     RTDEAEPVGA LLLERCRVVR EEPGTFSISF IEDPERKYHF ECSSEEQCQE 
ENSBTAP00000002158/1-149  RTDEAEPIGA LLLEHCRVIH EEPNSFSISF LEDPERKYHF ECCSEEQCQQ 
bmy_06698T0/1-104         ---------- ---------- --------GF LEDPERKYHF ECCSEEQCQE 
ENSTTRP00000011501/1-76   ---------- ---------- ---------- ---------- ---------- 
BACU006495/1-95           ---------- ---------- ---------- ----ERKYHF ECCSEEQCQE 


                          101                                                150
ENSP00000465391/1-149     WMEALRRASY EFMRRSLIFY RNEIRKVTGK DPLEQFGISE EARFQLSGLQ 
ENSBTAP00000002158/1-149  WMAALRQASY EFMRRSLIFY RNEIQKMTGK DPLEQYGISE EARFQLSGLK 
bmy_06698T0/1-104         WMTALRRASY EFMRRSLIFY RNEIQKMTGK DPLEQFGISE EARFQLSGLK 
ENSTTRP00000011501/1-76   ---------- ---------F RTDEAEPVGA LLLEHCRVTQ E---EPSGFS 
BACU006495/1-95           WMTALRRASY EFMRRSLIFY RNEIQKMTGK DPLEQFGISE EARFQLSGLK 


                          151                                                200
ENSP00000465391/1-149     A 
ENSBTAP00000002158/1-149  A 
bmy_06698T0/1-104         A 
ENSTTRP00000011501/1-76   I 
BACU006495/1-95           A