KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:52 2014 Check: 00 .. Name: ENSTTRP00000001464/1-660 Len: 788 Check: 4431 Weight: 1.00 Name: bmy_18592T0/1-588 Len: 788 Check: 2030 Weight: 1.00 Name: ENSBTAP00000002170/1-616 Len: 788 Check: 4894 Weight: 1.00 Name: ENSP00000377015/1-652 Len: 788 Check: 6712 Weight: 1.00 Name: BACU002281/1-708 Len: 788 Check: 2263 Weight: 1.00 // 1 50 ENSTTRP00000001464/1-660 MSGQSLTDRI TAAQHSVTGS AVSKTVCKAT THEIMGPKKK HLDYLIQCTN bmy_18592T0/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002170/1-616 ---------- ---------- ---------- ---------- ----LIQCTN ENSP00000377015/1-652 MSGQSLTDRI TAAQHSVTGS AVSKTVCKAT THEIMGPKKK HLDYLIQCTN BACU002281/1-708 MSGQSLTDRI TAAQHSVTGS AVSKTVCKAT THEIMGPKKK HLDYLIQCTN 51 100 ENSTTRP00000001464/1-660 EMNVNIPQLA DSLFERTTNS SWVVVFKSLI TTHHLMVYGN ERFIQYLASR bmy_18592T0/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002170/1-616 EMNVNIPQLA DSLFERTTNS SWVVVFKSLI TTHHLMVYGN ERFIQYLASR ENSP00000377015/1-652 EMNVNIPQLA DSLFERTTNS SWVVVFKSLI TTHHLMVYGN ERFIQYLASR BACU002281/1-708 EMNVNIPQLA DSLFERTTNS SWVVVFKSLI TTHHLMVYGN ERFIQYLASR 101 150 ENSTTRP00000001464/1-660 NTLFNLSNFL DKSGLQGYDM STFIRRYSRY LNEKAVSYRQ VAFDFTKVKR bmy_18592T0/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002170/1-616 NTLFNLSNFL DKSGLQGYDM STFIRRYSRY LNEKAVSYRQ VAFDFTKVKR ENSP00000377015/1-652 NTLFNLSNFL DKSGLQGYDM STFIRRYSRY LNEKAVSYRQ VAFDFTKVKR BACU002281/1-708 NTLFNLSNFL DKSGLQGYDM STFIRRYSRY LNEKAVSYRQ VAFDFTKVKR 151 200 ENSTTRP00000001464/1-660 GADGVMRTMN TEKLLKTVPI IQNQMDALLD FNVNSNELTN GVINAAFMLL bmy_18592T0/1-588 -----MRTMN TEKLLKTVPI IQNQMDALLD FNVNSNELTN GVINAAFMLL ENSBTAP00000002170/1-616 GADGVMRTMN TEKLLKTVPI IQNQMDALLD FNVNSNELTN GVINAAFMLL ENSP00000377015/1-652 GADGVMRTMN TEKLLKTVPI IQNQMDALLD FNVNSNELTN GVINAAFMLL BACU002281/1-708 GADGVMRTMN TEKLLKTVPI IQNQMDALLD FNVNSNELTN GVINAAFMLL 201 250 ENSTTRP00000001464/1-660 FKDAIRLFAA YNEGIINLLE KYFDMKKNQC KEGLDIYKKF LTRMTRISEF bmy_18592T0/1-588 FKDAIRLFAA YNEGIINLLE KYFDMKKNQC KEGLDIYKKF LTRMTRISEF ENSBTAP00000002170/1-616 FKDAIRLFAA YNEGIINLLE KYFDMKKNQC KEGLDIYKKF LTRMTRISEF ENSP00000377015/1-652 FKDAIRLFAA YNEGIINLLE KYFDMKKNQC KEGLDIYKKF LTRMTRISEF BACU002281/1-708 FKDAIRLFAA YNEGIINLLE KYFDMKKNQC KEGLDIYKKF LTRMTRISEF 251 300 ENSTTRP00000001464/1-660 LKVAEQVGID RGDIPDLSQA PSSLLDALEQ HLASLEGKKI KDSTAASRAT bmy_18592T0/1-588 LKVAE----- ---------A PSSLLDALEQ HLASLEGKKI KDSTAASRAT ENSBTAP00000002170/1-616 LKVAEQVGID RGDIPDLSQA PSSLLDALEQ HLASLEGKKI KDSTAASRAT ENSP00000377015/1-652 LKVAEQVGID RGDIPDLSQA PSSLLDALEQ HLASLEGKKI KDSTAASRAT BACU002281/1-708 LKVAEQVGID RGDIPDLSQA PSSLLDALEQ HLASLEGKKI KDSTAASRAT 301 350 ENSTTRP00000001464/1-660 TLSNAVSSLA STGLSLTKVD EREKQAALEE EQARLKALKE QRLKELAKKP bmy_18592T0/1-588 TLSNAVSSLA STGLSLTKVD EREKQAALEE EQARLKALKE QRLKELAKKP ENSBTAP00000002170/1-616 TLSNAVSSLA STGLSLTKVD EREKQAALEE EQARLKALKE QRLKELAKKP ENSP00000377015/1-652 TLSNAVSSLA STGLSLTKVD EREKQAALEE EQARLKALKE QRLKELAKKP BACU002281/1-708 TLSNAVSSLA STGLSLTKVD EREKQAALEE EQARLKALKE QRLKELAKKP 351 400 ENSTTRP00000001464/1-660 HTSLTTAASP VSTSAGGIVT APAIDIFSTP SSSNXXXXXX XXXXXXXXXX bmy_18592T0/1-588 HTSLTTAASP VSTSAGGIMT APAIDIFSTP SSSNSTSKLP NDLLDLQQPT ENSBTAP00000002170/1-616 HTSLTTAASP VSTSAGSVMT APAIDIFSTP SSSNSTSKLP NDLLDLQQPT ENSP00000377015/1-652 HTSLTTAASP VSTSAGGIMT APAIDIFSTP SSSNSTSKLP NDLLDLQQPT BACU002281/1-708 HTSLTTAASP VSTSAGGIMT APAIDIFSTP SSSNSTSKLP NDLLDLQQPT 401 450 ENSTTRP00000001464/1-660 XXXXXXXXXX XXX------- -------XXX XXXXPFSATV DAVDDAIPSL bmy_18592T0/1-588 FHPSVLPMSA ASQEMIDIKR LGKKCQSIDI KRLDPFSATV DAVDDAIPSL ENSBTAP00000002170/1-616 FHPPVLSMST ASQ------- -------VAS TWGDPFSATV DAVDDAIPSL ENSP00000377015/1-652 FHPSVHPMST ASQ------- -------VAS TWGDPFSATV DAVDDAIPSL BACU002281/1-708 FHPSVLPMSA ASQ------- -------VAS TWGDPFSATV DAVDDAIPSL 451 500 ENSTTRP00000001464/1-660 NPFLTKSSGD VHPPISSDVS TFTTRTPTHE MFV------- ---------- bmy_18592T0/1-588 NPFLTKSSGD VHPPISSDVS TFTTRTPTHE MFVGKFKAYD LGQEEDQKAK ENSBTAP00000002170/1-616 NPFLTKSSGD VHLPISSDVS TFTTRTPTHE MFV------- ---------- ENSP00000377015/1-652 NPFLTKSSGD VHLSISSDVS TFTTRTPTHE MFV------- ---------- BACU002281/1-708 NPFLTKSSGD VHPPISSDVS TFTTRTPTHE MFVDSFCGTQ AYRNTTLMCH 501 550 ENSTTRP00000001464/1-660 ---------- ---------- ---------- ---------- ---------- bmy_18592T0/1-588 QISKVDGYIL QGSNIISQIG APRNLRRWLL SLQKDRLISD ISQILERIWD ENSBTAP00000002170/1-616 ---------- ---------- ---------- ---------- ---------- ENSP00000377015/1-652 ---------- ---------- ---------- ---------- ---------- BACU002281/1-708 EPSTVAGL-- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000001464/1-660 ---------- ---------- -GFTPSPVAQ PHPSAGLNVD FESVFGNKST bmy_18592T0/1-588 KIAREKRNWK GKRKEGERNM EGFAPSPVAQ PHPSAGLNVD FESVFGNKST ENSBTAP00000002170/1-616 ---------- ---------- -GFTPSPVAQ PHPSAGLNVD FESVFGNKST ENSP00000377015/1-652 ---------- ---------- -GFTPSPVAQ PHPSAGLNVD FESVFGNKST BACU002281/1-708 ---------- ---------F GGFTPSPVAQ PHPSAGLNVD FESVFGNKST 601 650 ENSTTRP00000001464/1-660 NVIVDSGGFD ELGGLLKPTV ASQNQSLPVA KLPPNKLVSD DLDSSLANLV bmy_18592T0/1-588 NVIVDSGGFD ELGGLLKPTV ASQNQSLPVA KLPPNKLVSD DLDSSLANLV ENSBTAP00000002170/1-616 NITVDSGGFD ELGGLLKPTV ASQNQSLPVA KLPPNKLVSD DLDSSLANLV ENSP00000377015/1-652 NVIVDSGGFD ELGGLLKPTV ASQNQNLPVA KLPPSKLVSD DLDSSLANLV BACU002281/1-708 NVIVDSG--- --GGLLKPTV ASQNQSLPVA KLPPNKLVSD DLDSSLANLV 651 700 ENSTTRP00000001464/1-660 GNLGIGNGTT KNDVNWSQPG EKKLTGGSNW QPKVAPTTAW NAATMNGMHF bmy_18592T0/1-588 GNLGIGNGTT KNDVNWSQPG EKKLTGGSNW QPKVAPTTAW NAATMNGMHF ENSBTAP00000002170/1-616 GNLGIGNGTT KNDVNWSQPG EKKLTGGSNW QPKVAPTTAW NAATMNGMHF ENSP00000377015/1-652 GNLGIGNGTT KNDVNWSQPG EKKLTGGSNW QPKVAPTTAW NAATM----- BACU002281/1-708 GNLGIGNGTT KNDVNWSQPG EKKLTGGSNW QPKVAPTTAW NAATMNGMHF 701 750 ENSTTRP00000001464/1-660 PQYAPPVMAY PATTPTGMIG YGIPPQMGSV PVMTQPTLIY SQPVMRPPNP bmy_18592T0/1-588 PQYAPPVMAY PATTPTGMIG YGIPPQMGSV PVMTQPTLIY SQPVMRPPNP ENSBTAP00000002170/1-616 PQYAPPVMAY PATTPTGMIG YGIPPQMGSV PVMTQPSLIY SQPVMRPPNP ENSP00000377015/1-652 ---APPVMAY PATTPTGMIG YGIPPQMGSV PVMTQPTLIY SQPVMRPPNP BACU002281/1-708 PQYAPPVMAY PATTPTGMIG YGIPPQMGSV PVMTQPTLIY NQPVMRPPNP 751 800 ENSTTRP00000001464/1-660 FGPVSGAQVQ ---------- ---------- ------RM bmy_18592T0/1-588 FGPVSGA--- ---------- ---------- -------- ENSBTAP00000002170/1-616 FGPVSGAQIT ---------- ---------- ------FS ENSP00000377015/1-652 FGPVSGAQIQ ---------- ---------- ------FM BACU002281/1-708 FGPVSGAQLS AASSPSSPSP HRASGKDPFA ELSLEDFL