KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:53 2014 Check: 00 .. Name: ENSP00000337991/1-685 Len: 725 Check: 3091 Weight: 1.00 Name: ENSBTAP00000002177/1-683 Len: 725 Check: 1405 Weight: 1.00 Name: ENSTTRP00000013052/1-678 Len: 725 Check: 5208 Weight: 1.00 Name: bmy_03631T0/1-718 Len: 725 Check: 2632 Weight: 1.00 Name: BACU005604/1-614 Len: 725 Check: 5561 Weight: 1.00 // 1 50 ENSP00000337991/1-685 MDFREILMIA SKGQGVNNVP KRYSLAVGPP KKDPKVKGVQ SAAVQAFLKR ENSBTAP00000002177/1-683 MDFREILLIA SKAQGVNNVP KRYSLAVGPP KKDPKVKGVQ SAAVQAFLRR ENSTTRP00000013052/1-678 MDFREVLLIA SKAQGVNNVP KRYSLAVGPP KKDPKVKGVQ SAAVQAFLRR bmy_03631T0/1-718 MDFREVLLIA SKAQGVNNVP KRYSLAVGPP KKDPKVKGVQ SAAVQAFLRR BACU005604/1-614 MDFREVLLIA SKAQGVNNVP KRYSLAVGPP KKDPKVKGVQ SAAVQAFLRR 51 100 ENSP00000337991/1-685 KEEELRRKAL EEKRRKEELV KKRIELKHDK KARAMAKRTK DNFHGYNGIP ENSBTAP00000002177/1-683 KEEELRRKAL EEKRRKEELV KKRIELKHDK KARAMAKRTK DNFHGYNGIP ENSTTRP00000013052/1-678 KEEELRKKAL EEKRRKEELV KKRIELKHDK KARAMAKRTK DNFHGYNGIP bmy_03631T0/1-718 KEEELRRKAL EEKRRKEELV KKRIELKHDK KARAMAKRTK DNFHGYNGIP BACU005604/1-614 KEEELRRKAL EEKRRKEELV KKRIELKHDK KARAMAKRTK DNFHGYNGIP 101 150 ENSP00000337991/1-685 IEEKSKKRQA TESHTSQGTD REYEMEEENE FLEYNHAESE QEYEEEQEPP ENSBTAP00000002177/1-683 VEEKSRKRQA MQSHTSQGTD QEYEMEEEDE FLEYNQAESE QEYEEEQEPP ENSTTRP00000013052/1-678 VEEKSKKRQA MQTHTSQGTD QEFEMEEEDE FLEYNQAESE QEYEEEQEPP bmy_03631T0/1-718 IEEKSKKRQA MQTHTSQGTD QEFEMEEEDE FLEYNQAESE QEYEEEQEPP BACU005604/1-614 VEEKSKKRQA MQTHTSQGTD QEFEMEEEDE FLEYNQAESE QEYEEEQELP 151 200 ENSP00000337991/1-685 KVESKPKVPL KSAPPPMNFT DLLRLAEKKQ FEPVEIKVVK KSEERPMTAE ENSBTAP00000002177/1-683 KVESKPKVPL KSAPPVMNFN DLLRLAEKKQ YEPVEIKVVK KTEERPMTAE ENSTTRP00000013052/1-678 KVESKPKVPL KSAPPLMNFN DLLRLAEKKQ YEPVEIKVVK KTEERPMTAE bmy_03631T0/1-718 KAESKPKVPL KSAPPLMNFN DLLRLAEKKQ YEPVEIKVVK KTEERPMTAE BACU005604/1-614 KAESKPKVPL KSAPPLMNFN DLLRLAEKKQ YEPVEIKVVK KTEERPMTAE 201 250 ENSP00000337991/1-685 ELREREFLER KHRRKKLETD GKLPPTVSKK APSQKESVGT KLSKGSGDRH ENSBTAP00000002177/1-683 ELREREFLER KRRKRTPETD ARLPPT--RR VPSQKEGVGT KLSRGSGDMH ENSTTRP00000013052/1-678 ELREREFLEQ KRRKRKAEID AGLPPT--RK VPSQKESVGT KLSKGSGDTH bmy_03631T0/1-718 ELREREFLEQ KRRKRKPETD ARLPPT--RK VPSQKESVGT KLSKGSGDTH BACU005604/1-614 ELREREFLEQ KRRKRKPETD ARLPPT--RK VPSQKESVGT KLSKGSGDTH 251 300 ENSP00000337991/1-685 PSSKGMPLPH AEKKSRPSMA NEKHLALSSS KSMPGERIKA GSGNSSQPSL ENSBTAP00000002177/1-683 PPCKGTVLPH PEKKPRPSPA DEKRLHLSSS KSVPGERTKV APGSCSQSSL ENSTTRP00000013052/1-678 PSSKGTPLPY AEKKSRPSTS NEKHLHLSSS KSMPGERTKV VSGNCAQPLP bmy_03631T0/1-718 PSSKGTPLPY AEKKSRPSTA NEKHLRLSSS KSMPGERTKV VSGNCAQPLX BACU005604/1-614 PSSKGTPLPY AEKKSRPSTA NEKHLRLSSS KSMPGERTKV VSGSCAQPLP 301 350 ENSP00000337991/1-685 REGHDKPVFN GAGKPHSSTS SPSVPKTSAS RTQKSAVEHK AKKSLSHPSH ENSBTAP00000002177/1-683 HEGRDRPVFN GAGKPHPSTY SPSVPKTSAK GPQKSATEHK AKKSPPHPSH ENSTTRP00000013052/1-678 CEGRDRPVFN GAGKPHSSTC SPSIPKTSAK GTPKSATEHK AKKSP-HPSR bmy_03631T0/1-718 CEGRDRPVFN GAGKPHSSTC SPSIPKTSAK GTPKSATEHK AKKSP-HPSC BACU005604/1-614 CEGRDRPVFN GAGKPHSSTC SPSIPKTSAK GTPKSATEHK AKKSP-HPSR 351 400 ENSP00000337991/1-685 SRPGPMVTPH NKAKSPGVRQ PGSSSSSAPG QPSTGVARPT VSSGPVPRRQ ENSBTAP00000002177/1-683 SRPGPMATPH NKAKSPGVRP PGSSSSSAPG RPSTGTARPT VSSGPMPKRQ ENSTTRP00000013052/1-678 SRPGPMVTPH NKAKSPGVRQ PGSSSSSAPG RPSTGTAQPT VSSGPVPRRQ bmy_03631T0/1-718 SRPGPMVTPH DKARSPGVRQ PGSSSSSAPG RPSTGTARPT VSSGPVPRRQ BACU005604/1-614 SRPGPMVTPH DKAKSPGVRQ PGSSSSSAPG RPSTGTARPT VSSGPVPRRQ 401 450 ENSP00000337991/1-685 NGSSSSGPER SISGSKKPTN DSNPSRRTVS GTCGPGQPAS SSGGPGRPIS ENSBTAP00000002177/1-683 NGSSNSGPER SVSGNRKLTS DFSPPGRTVS GTSGLGRPAS SSGGPGRPVS ENSTTRP00000013052/1-678 NGSSNSGPER SVSGTRKPTS DLNPPGRTVS GTSGLGRPAG SSGCPGRPTS bmy_03631T0/1-718 NGSSNSGPER SVSGTKKPTS DLNPPGRTVS GTSGLGRPAG SSGCPGRPTS BACU005604/1-614 NGSSNSGPER SVSGTRKPTS DLNPPGRTVS GTSGLGRPAG SSG------- 451 500 ENSP00000337991/1-685 G--------- ---------- ---------- ---------- -SVSSARPLG ENSBTAP00000002177/1-683 G--------- ---------- ---------- ---------- -SSGSGRPVG ENSTTRP00000013052/1-678 G--------- ---------- ---------- ---------- -SGGSAGPVG bmy_03631T0/1-718 GSGGSGRPVG SSGGPGRPMG SSGGPGRPMG SSGGPGRPVG SSGGSGRPVG BACU005604/1-614 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000337991/1-685 SSRGPGRPVS SPHELRRPVS GLGPPGRSVS GPGRSISGSI PAGRTVSNSV ENSBTAP00000002177/1-683 SSGGPGRPVS SLHDHRRPMS GSGPPGRSIS GPGRSVSGPA PAGRPVSSSG ENSTTRP00000013052/1-678 SSGGPGRPVS GPHDIRRPVS GSGAPRRSVN GPGQSV---V PAGRIVSSSG bmy_03631T0/1-718 SSGGPGRPVS SPHDLRRPVS GSGAPRRSVN DPGRSV---V PAGRTVSSSG BACU005604/1-614 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000337991/1-685 PGRPVSSLGP GQTVSSSGPT IKPKCTVVSE TISSKNIISR SSNGQMNGMK ENSBTAP00000002177/1-683 PGRPVSSLGP GRTVNTSGPP LKPKCTVVSE TISSKNIISR PSNGQMNGMK ENSTTRP00000013052/1-678 PGRPVSSFGP GRTVSTSGPS LKPKCTVVSE TISSKNIISR SSNGQMNGMK bmy_03631T0/1-718 PGRPVSSFVP GRTVSTSGPS LKPKCTVVSE TISSKNIISR SSNGQMNGMK BACU005604/1-614 PGRPVSSFAP GRTVSTSGPS LKPKCTVVSE TISSKNIISR SSNGQMNGMK 601 650 ENSP00000337991/1-685 PPLSGYRAAQ GPQRLPFPTG YKRQREYEEE DDDDDEYDSE MEDFIEDEGE ENSBTAP00000002177/1-683 PSLSGYRSVL GPQRLPFPSG YKRQREYEEE EDDEEEYDSE MEDFIEDEGE ENSTTRP00000013052/1-678 PALSGYRSAQ GPQRLPFPGS YKRQREYEEE EDDDE-YDSE MEDFIEDEGE bmy_03631T0/1-718 PSLSGYRSAQ GPQRLPSPGS YKRQREYAEE EDDDE-YDSE MEDFIEDEGE BACU005604/1-614 PSLSGYRSAQ GPQRLPSPGS YKRQREDEEE EDDDE-YDSE MEDFIEDEGE 651 700 ENSP00000337991/1-685 PQEEISKHIR EIFGYDRKKY KDESDYALRY MESSWKEQQK EEAKSLRLGM ENSBTAP00000002177/1-683 PQEEISKHIR EIFGYDRKKY KDESDYALRY MESSWKEQQK EEAKSLRLGM ENSTTRP00000013052/1-678 PQEEISKHIR EIFGYDRKKY KDESDYALRY MESSWKEQQK EEAKSLRLGM bmy_03631T0/1-718 PQEEISKHIR EIFGYDRKKY KDESDYALRY MESSWKEQQK EEAKSLRLGM BACU005604/1-614 PQEEISKHIR EIFGYDRKKY KDESDYALRY MESSWKEQQK EEAKSLRLGM 701 750 ENSP00000337991/1-685 QEDLEEMRRE EEEMQRRRAK KLKRR ENSBTAP00000002177/1-683 QEDLEEMRRE EEEMRRRKAK KLKKR ENSTTRP00000013052/1-678 QEDLDEMRRE EEEMRRRKAK KLKKH bmy_03631T0/1-718 QEDLDEMRRE EEEMKRRKAK KLKKH BACU005604/1-614 QEDLDEMRRE EEEMKRRKAK KLKKH