KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:16:54 2014 Check: 00 .. Name: ENSBTAP00000002179/1-626 Len: 631 Check: 7684 Weight: 1.00 Name: ENSTTRP00000009488/1-619 Len: 631 Check: 7174 Weight: 1.00 Name: bmy_05319T0/1-560 Len: 631 Check: 5526 Weight: 1.00 Name: BACU018142/1-627 Len: 631 Check: 1320 Weight: 1.00 // 1 50 ENSBTAP00000002179/1-626 MAATATIPSS TT----ASAT TTATAAALGE VEDEGLLASL FRDRFPEAQW ENSTTRP00000009488/1-619 MAATATLPLS TT----ASAT ATATAAALGE VEDEGLLASL FRDRFPEAQW bmy_05319T0/1-560 MAAMATLPPS TT------AT ATATAAALGE VEDEGLLASL FRDRFPEAQW BACU018142/1-627 MAATATLPPS TTVSTTASAT ATATAAALGE VEDEGLLVSL FRDRFPEAQW 51 100 ENSBTAP00000002179/1-626 RERPDVGRYL RELSGSGLER LRREPERLAE ERAQLLQQTR DLAFANYKTF ENSTTRP00000009488/1-619 RERPDVGRYL RELSGSGLER LRREPDRLAE ERAQLLQQTR DLAFANYKTF bmy_05319T0/1-560 RERPDVGRYL RELSGSGLER LRREPDRLAE ERAQLLQQTR DLAFANYKTF BACU018142/1-627 RGGAAPG-YL RELSGSGLER LRREPDRLAK ERAQLLQQTR DLAFANYKTF 101 150 ENSBTAP00000002179/1-626 IRGAECTERI HRLFGDVEES LGRLLDRLPS FQQSCRNFVK EAEEISSNRR ENSTTRP00000009488/1-619 IRGAECTERI HRLFGDVEES LGRLLDRLPS FQQSCRNFVK EAEEISSNRR bmy_05319T0/1-560 IRGAECTERI HRLFGDVEES LGRLLDRLPS FQQSCRNFVK EAEEISSNRR BACU018142/1-627 IRGAECTERI HRLFGDVEES LGRLLDRLPS FQQSCRNFVK EAEEISSNRR 151 200 ENSBTAP00000002179/1-626 MNTLTLNRHT EILEILEIPQ LMDTCVRNSY YEEALELAAY VRRLERKYSS ENSTTRP00000009488/1-619 MNTLTLNRHT EILEILEIPQ LMDTCVRNSY YEEALELAAY VRRLERKYSS bmy_05319T0/1-560 MNTLTLNRHT EILEILEIPQ LMDTCVRNSY YEEALELAAY VRRLERKYSS BACU018142/1-627 MNTLTLNRHT EILEILEIPQ LMDTCVRNSY YEEALELAAY VRRLERKYSS 201 250 ENSBTAP00000002179/1-626 IPVIQGIVNE VRQSMQLMLS QLIQQLRTNI QLPACLRVIG FLRQMDVFTE ENSTTRP00000009488/1-619 IPVIQGIVNE VRQSMQLMLS QLIQQLRTNI QLPACLRVIG FLRQMDVFTE bmy_05319T0/1-560 IPVIQGIVNE VRQSTQLMLS QLIQQLRTNI QLPACLRVIG FLRQMDVFTE BACU018142/1-627 IPVIQGIVNE VRQSTQLMLS QLIQQLRTNI QLPACLRVIG FLRQMDVFTE 251 300 ENSBTAP00000002179/1-626 AELRVKFLQA RDAWLRSILT AIPNDDPYFH ITKTIEACRV HLFDIITQYR ENSTTRP00000009488/1-619 AELRVKFLQA RDAWLRSILT AIPSDDPYFH ITKTIEACRV HLFDIITQYR bmy_05319T0/1-560 AELRVKFLQA RDAWLRSILT AIPSDDPYFH ITKTIEACRV HLFDIITQYR BACU018142/1-627 AELRVKFLQA RDAWLRSILT AIPSDDPYFH ITKTIEACRV HLFDIITQYR 301 350 ENSBTAP00000002179/1-626 AIFSDEDPLL PPAMGEHMVN ESAIFHGWVL QKVSQFLQVL ETDLNRGIGS ENSTTRP00000009488/1-619 AIFSDEDPLL PPAIGEHTVN ESAIFHGWVL QKVSQFLQVL ETDLNRGIGS bmy_05319T0/1-560 AIFSDEDPLL PPAMGEHTVN ESAIFHGWVL QKVSQFLQVL ETDLNRGIGS BACU018142/1-627 AIFSDEDPLL PPAMGEHTVN ESAIFHGWVL QKVSQFLQVL ETDLNRGIGS 351 400 ENSBTAP00000002179/1-626 RLDSLLGQCM YFGLSFSRVG ADFRGQLVPV FQQVAISTFQ KAIQEAVEKF ENSTTRP00000009488/1-619 RLDSLLGQCM YFGLSFSRVG ADFRGQLAPV FQRVAISTFQ KAIQETVEKF bmy_05319T0/1-560 RLDSLLGQCM YFGLSFSRVG ADFRGQLAPV FQRVAIGTFQ KAIQETVEKF BACU018142/1-627 RLDSLLGQCM YFGLSFSRVG ADFRGQLAPV FQRVAIGTFQ KAIQETVEKF 401 450 ENSBTAP00000002179/1-626 QDEMNSYTLI STPAVLGSSA LPAAAPVTQP GTLQPPMVLL DFPPLACFLN ENSTTRP00000009488/1-619 QDEMNSYTLI SAPAILSSSN LPAAVPVTQP GTLQPPMVLL DFPPLACFLN bmy_05319T0/1-560 QDEMNSYTLI SAPAILSSSN LPAAVPVTQP GTLQPPMVLL DFPPLACFLN BACU018142/1-627 QDEMNSYTLI SAPAILSSSN LPAAVPVTQP GTLQPPMVLL DFPPLACFLN 451 500 ENSBTAP00000002179/1-626 SILVAFNDLR LCCPVALAQE VTRALEDALD KVTKVILAFH RAEEAAFSSG ENSTTRP00000009488/1-619 NILVAFNDLR LCCPMALAQD VTVALEDALA KVTKVILAFH RAEEAAFSSG bmy_05319T0/1-560 NILVAFNDLR LCCPMALAQD VTAALEDALA K--------- ---------- BACU018142/1-627 NILVAFNDLR LCCPMALAQD VTVALEDALA KVTKVILAFH RAEEAAFSSA 501 550 ENSBTAP00000002179/1-626 EQELFVQFCT VFLEDLVPYL NRCLQVLFPP AQIAQTLGIP PTQLSKYGNL ENSTTRP00000009488/1-619 EQELFVQFCT VFLEDLVPYL NRCLQVLFPP AQMAQTLCIP PTQLSKYGNL bmy_05319T0/1-560 ---------- ---------- ---------- ---------- ---LSKYGNL BACU018142/1-627 EQELFVQFCT VFLEDLVPYL NRCLQVLFPP AQMAQTLGIP PTQLSKYGNL 551 600 ENSBTAP00000002179/1-626 GHVNVSVVQE PLAFILPKRE PVFCL-DKEL VPELPAPAPA LPPNAPSPEP ENSTTRP00000009488/1-619 GHVNVSVVQE PLAFILPKRE MAFCLDDKEL VPEVTAPAPE PPDEGPVLE- bmy_05319T0/1-560 GHVNVSVVQE PLAFILPKRE MALCLDDKAL VPELTAPAPE PPAEGPVLE- BACU018142/1-627 GHVNVSVVQE PLAFILPKRE MALCLDDKAL VPELTAPAPE PPAEGPVLE- 601 650 ENSBTAP00000002179/1-626 VTPVTPAVPD AGQEEVESAG PPQPDEPSAG I ENSTTRP00000009488/1-619 --PVTPAFPD GGQQEAQAA- ----DEPSAG T bmy_05319T0/1-560 --PFTPAFPD GGQQEVGSVG PPQADEPSAG T BACU018142/1-627 --PVTPAFPD GGQQEVGSAG PPQADEPSAG T