KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:16:56 2014 Check: 00 ..
Name: ENSP00000294818/1-313 Len: 320 Check: 4986 Weight: 1.00
Name: ENSTTRP00000003430/1-313 Len: 320 Check: 9812 Weight: 1.00
Name: ENSBTAP00000002199/1-320 Len: 320 Check: 2194 Weight: 1.00
Name: bmy_13964T0/1-245 Len: 320 Check: 3319 Weight: 1.00
Name: BACU014438/1-298 Len: 320 Check: 6599 Weight: 1.00
//
1 50
ENSP00000294818/1-313 MSLASGPGPG WLLFSFGMGL VSGSKCPNNC LCQAQEVICT GKQLTEYPLD
ENSTTRP00000003430/1-313 MSRASGPGPG WLLFSFGMGL VSGSRCPNNC QCQAQEVICT GVQLTEYPSD
ENSBTAP00000002199/1-320 MSLASDPRPG WLLFSFGMVL VSGSKCPNNC QCQDQEVICT GIQLTEYPSD
bmy_13964T0/1-245 ---------- ---------- ---------- ---------- ----------
BACU014438/1-298 ---------- -------MGL VSGSRCPNNC QCQAQEVICS GVQLTEYPSD
51 100
ENSP00000294818/1-313 IPLNTRRLFL NENRITSLPA MHLGLLSDLV YLDCQNNRIR EVMDYTFIGV
ENSTTRP00000003430/1-313 IPLNTRRLYL NENSIRFLPA MNLGLLSDLV YLDCQKNLIQ EVMDYTFVGV
ENSBTAP00000002199/1-320 IPLNTRRLYL NDNKIRFLPA MNLGLLSDLV YLDCQKNRIQ EVMDYTFVGV
bmy_13964T0/1-245 ---------- ---------- MNLGLLSDLV YLDCQKNLIQ EVMDYTFVGV
BACU014438/1-298 IPLNTRRLYL NDNSIRFLPA MNLGLLSDLV YLDCQKNLIQ EVMDYTFVGV
101 150
ENSP00000294818/1-313 FKLIYLDLSS NNLTSISPFT FSVLSNLVQL NIANNPHLLS LHKFTFANTT
ENSTTRP00000003430/1-313 FKLIYLDLSF NNLTLISPYS FSMLSNLVQL NISSNPHLLS LNKYTFANTS
ENSBTAP00000002199/1-320 FRLIYLDLSF NNLTFISPYS FSMLSNLLQL NISNNPHLLS LNKYTFANTS
bmy_13964T0/1-245 FKLIYLDLSL NNLTLISPYS FSVLSNLVQL NISSNPHLLS LNKYTFANTS
BACU014438/1-298 FKLIYLDLSF NNLTLISPYS FSVLSNLVQL NISSNPHLLS LNKYTFANTS
151 200
ENSP00000294818/1-313 SLRYLDLRNT GLQTLDSAAL YHLTTLETLF LSGNPWKCNC SFLDFAIFLI
ENSTTRP00000003430/1-313 SLRYLDLRNT GLQTLDPAAF HNLITLQTLY LSGNPWKCNC SFLDFTIYLI
ENSBTAP00000002199/1-320 SLRYLDLRNT GLQTLDEAAF QNLITLQTLY LSGNPWKCNC FFLDFTIYLI
bmy_13964T0/1-245 SLRYLDLRNT GLQTLDHAAF HNLITLQTLY LSGNPWKCNC SFLDFTIYLI
BACU014438/1-298 SLRYLDLRNT GLQTLDHAAF HNLITLQTLY LSGNPWKCNC SFLDFTVYLI
201 250
ENSP00000294818/1-313 VFHMDPSDDL NATCVEPTEL TGWPITRVGN PLRYMCITHL DHKDYIFLLL
ENSTTRP00000003430/1-313 MSPVNHPDE- NATCLEPTKL AV-PITKVGE PXXXXXXXXX XXXXXXXXXX
ENSBTAP00000002199/1-320 VSHLNYPDEQ NATCVEPTEL AGWPITKVGN PLRYMCITNL DLQDYIFLLL
bmy_13964T0/1-245 VSPLNHPDEQ NATCLEPTEL AGWPITKVGN PLRYMCVTHL DRQDYIFLLL
BACU014438/1-298 VSPLNHPDEQ NATCLEPTEL AGWPITKVGN PLRYMCVTHL DRQDYIFLLL
251 300
ENSP00000294818/1-313 IGFCIFAAGT VAAWLTGVCA VLYQNTRHKS SE------ED EDEAGTRVEV
ENSTTRP00000003430/1-313 XXXXXXXXGT VDAWLTGVCA VLYQNARRRS SED-----EA EDELGQRVEA
ENSBTAP00000002199/1-320 ISFCIFCAGT VAAWLTGVCA VLYQNACRKS SEDEVEEEEA ENEDEQRVEV
bmy_13964T0/1-245 IGFCIFSAGT VAAWLTGVCA VLYQNARRRS SED-----DA EDEHGQRVEV
BACU014438/1-298 IGFCIFSAGT VAAWLTGVCA VLYQNARRRS SED-----EA EDEHGQRVEV
301 350
ENSP00000294818/1-313 SRRIFQTQTS SVQE-FPQLI
ENSTTRP00000003430/1-313 SRRIFQSRVE SGQDGFPQLI
ENSBTAP00000002199/1-320 SRRIFHSRVD SGHDGFPQLI
bmy_13964T0/1-245 SRRIFQSRVD SGQDGFPQLI
BACU014438/1-298 SRRIFQSRVD SSQDGFPQLI