KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:00 2014 Check: 00 .. Name: ENSP00000263798/1-890 Len: 1008 Check: 4777 Weight: 1.00 Name: ENSBTAP00000002222/1-889 Len: 1008 Check: 5627 Weight: 1.00 Name: BACU008505/1-921 Len: 1008 Check: 5553 Weight: 1.00 Name: bmy_09157T0/1-896 Len: 1008 Check: 4863 Weight: 1.00 Name: ENSTTRP00000002623/1-869 Len: 1008 Check: 4828 Weight: 1.00 // 1 50 ENSP00000263798/1-890 MALRRSMGRP GLPPLPLPP- ----PPRLGL LLAALASLLL PESAAAGLKL ENSBTAP00000002222/1-889 MALRRSMGRS GLPPLPRPP- -----PPPLL LLAGLAVLLL PEPAAAGLKL BACU008505/1-921 ---------- ---------- ---------- ---------- ---------- bmy_09157T0/1-896 MALRRSMGRS GLPPLPLPPL PPPPPSPLLL LLAGLTALLL PEPAAAGLKL ENSTTRP00000002623/1-869 ---------- ---------- -----SPLLL LLAGLTALLL PEPAAAGLKL 51 100 ENSP00000263798/1-890 MGAPVKLTVS QGQPVKLNCS VEGMEEPDIQ WVKDGAVVQN LDQLYIPVSE ENSBTAP00000002222/1-889 MGAPVKLTVS QGQPVKLNCS VEGMEEPEIQ WVKDGAVVHS MDQVYIPVSE BACU008505/1-921 MGAPVKLTVS QGQPVKLNCS VEGMEEPEIQ WVKDGAVVQS VDQVYIPVSE bmy_09157T0/1-896 MGAPVKLTVS QGQPVKLNCS VEGMEEPEIQ WVKDGAVVQS VDQVYIPVSE ENSTTRP00000002623/1-869 MGAPVKLTVS QGQPVKLNCS VEGMEEPEIQ WVKDGAVVQS VDQVYIPVSE 101 150 ENSP00000263798/1-890 QHWIGFLSLK SVERSDAGRY WCQVEDGGET EISQPVWLTV EGVPFFTVEP ENSBTAP00000002222/1-889 QHWIGFLSLK SVERSDAGRY WCQVEDGDET ETSQPVWLTV EGVPFFTVEP BACU008505/1-921 QHWIGFLSLK SVERSDAGRY WCQVEDGGET ETSQPVWLTV EGVPFFTVEP bmy_09157T0/1-896 QHWIGFLSLK SVERSDAGRY WCQVEDGGET ETSQPVWLTV EGVPFFTVEP ENSTTRP00000002623/1-869 QHWIGFLSLK S-ERSDAGRY WCQVEDGGET ETSQPVXXXX XXVPFFTVEP 151 200 ENSP00000263798/1-890 KDLAVPPNAP FQLSCEAVGP PEPVTIVWWR GTTKIGGPAP SPSVLNVTGV ENSBTAP00000002222/1-889 KDLAVPPNAP FQLFCEAVGP PEPVTIIWWR GGTQVGEPAP SPSVLNVTGV BACU008505/1-921 KDLAVPPNAP FQLFCEAVGP PEPVTIVWWR GGTKVGGPAP SPSILNVTGV bmy_09157T0/1-896 KDLAVPPNAP FQLFCEAVGP PEPVTIVWWR GGTKVGGPAP SPSVLNVTGV ENSTTRP00000002623/1-869 KDLAVPPNAP FQLFCEAVGP PEPVTIVWWR GGTKVGGPAP SPSVLNVTGV 201 250 ENSP00000263798/1-890 TQSTMFSCEA HNLKGLASSR TATVHLQ--- ---------- ---------- ENSBTAP00000002222/1-889 TQSTVFSCEA HNPKGLASSR TATVHLQ--- ---------- ---------- BACU008505/1-921 TQSTVFSCEA HNVKGLASSR PATVRLQ--- ---------- ---------- bmy_09157T0/1-896 TQSTVFSCEA HNVKGLASSR PATVRLQGRR TLGGEGREEL KAQLPCFLPL ENSTTRP00000002623/1-869 TQSTVFSCEA HNVKGLASSR PATVRLQ--- ---------- ---------- 251 300 ENSP00000263798/1-890 ---------- ----ALPAAP FNITVTKLSS SNASVAWMPG ADGRALLQSC ENSBTAP00000002222/1-889 ---------- ----ALPAAP FNITVTKLSS SNVSVAWMPG ADGRALIQSC BACU008505/1-921 ---------- ----ALPAAP FNITVTKLSS SNASVAWTPG ADGQALLQSC bmy_09157T0/1-896 FLSFLGTDSK SPSTALPAAP FNITVTKLSS SNASVAWTPG ADGQALLQSC ENSTTRP00000002623/1-869 ---------- ----ALPAAP FNITVTKLSS SNASVAWTPG ADGQALLQSC 301 350 ENSP00000263798/1-890 TVQVTQAPGG WEVLAVVVPV PPFTCLLRDL VPATNYSLRV RCANALGPSP ENSBTAP00000002222/1-889 TVQVTQAPGD WEVLAVMVPV PPFTCLLRDL TPATNYSLRV RCANALGPSP BACU008505/1-921 TVQVTQAPGG WEVLAVVVPV PPFTCLLRDL APATNYSLRV RCANALGPSP bmy_09157T0/1-896 TVQL------ ---------- ---------- ---------- ---------- ENSTTRP00000002623/1-869 TVQVTQAPGG WEVLAVVVPV PPFTCLLRDL APATNYSLRV RCANALGPSP 351 400 ENSP00000263798/1-890 YADWVPFQTK GLAPASAPQN LHAIRTDSGL ILEWEEVIPE APLEGPLGPY ENSBTAP00000002222/1-889 YADWVPFRTK GLAPASAPKN LRAIRTDSGL ILEWEEVIPE GPSEGPLGPY BACU008505/1-921 YADWVPFRTK GLAPASAPQN LRAIHTDSGL ILEWEEVIPE GPLEGPLGPY bmy_09157T0/1-896 ---------- ---------- ---------- ---------E AFYSGSVCDG ENSTTRP00000002623/1-869 YADWVPFRTK GLAPATAPQN LHAIHTDSGL ILEWEEVIPE GPLEGPLGPY 401 450 ENSP00000263798/1-890 KLSWVQDNGT QDELTVEGTR ANLTGWDPQK DLIVRVCVSN AVGCGPWSQP ENSBTAP00000002222/1-889 KMSWAQDNGT QGELTVEGTR ANLTGWDPQK DLTVRVCVAN AVGCGPWSQP BACU008505/1-921 KLSWAQDNGT QGELTVEGTR ANLTGWDPQK DLIVRVCVSS AVGCGPWSQP bmy_09157T0/1-896 GFSWL----- QGELTVEGTR ANLTGWDPQK DLIVRVCVSS AVGCGPWSQP ENSTTRP00000002623/1-869 KLSWVQDNGT QGELTVEGTR ANLTGWDPQK DLIVRVCVSS AVGCGPWSQP 451 500 ENSP00000263798/1-890 LVVSSHDRAG QQGPPHSRTS WVPVVLGVLT ALVTAAALAL ILLRKRRKET ENSBTAP00000002222/1-889 LVVSSHDHAG QQGAPHSRTS WVPVVLGVLT ALVTAAALAL ILLRKRRKET BACU008505/1-921 LVVSSHDHAG QQRAPHSRTS WVPVVLGVLT ALVTAAALAL ILLRKRRKET bmy_09157T0/1-896 LVVSSHDHAG QQRAPHSRTS WVPVVLGVLT ALVTAAALAL ILLRKRRKET ENSTTRP00000002623/1-869 LVVSSHDHAG RRGAPHSRTS WVPVVLGVLT ALVTAAALAL ILLRKTRKET 501 550 ENSP00000263798/1-890 RFGQAFDSVM ARGEPAVHFR AARSFNRERP ERIEATLDSL GISDELKEKL ENSBTAP00000002222/1-889 RFGQAFDSVM ARGEPAVHFR AARSFNRERP ERIEATLDSL GISDELKDKL BACU008505/1-921 RFGQAFDTVM ARGEPAVHFR AARSFNRERP ERIEATLDSL GISDELKDKL bmy_09157T0/1-896 RFGQAFDSVM ARGEPAVHFR AARSFNRERP ERIEATLDSL GISDELKDKL ENSTTRP00000002623/1-869 RFGQAFDSVM ARGEPAVHFR AARSFNRERP ERIEATLDSL GISDELKDKL 551 600 ENSP00000263798/1-890 EDVLIPEQQF TLGRMLGKGE FGSVREAQLK QEDGSFVKVA VKMLKADIIA ENSBTAP00000002222/1-889 EDVLIPEQQF TLGRMLGKGE FGSVREAQLK QEDGSFVKVA VKMLKADIIA BACU008505/1-921 EDVLIPEQQF TLGRMLGKGE FGSVREAQLK QEDGSFVKVA VKMLKADIIA bmy_09157T0/1-896 EDVLIPEQQF TLGRMLGKGE FGSVREAQLK QEDGSFVKVA VKMLKADIIA ENSTTRP00000002623/1-869 EDVLIPEQQF TLGRMLGKGE FGSVREAQLK QEDGSFVKVA VKMLKADIIA 601 650 ENSP00000263798/1-890 SSDIEEFLRE AACMKEFDHP HVAKLV---- ---------- ---------- ENSBTAP00000002222/1-889 SSDIEEFLRE AACMKEFDHP HVAKLV---- ---------- ---------- BACU008505/1-921 SSDIEEFLRE AACMKEFDHP HVAKLVGEPL LGGGKCKIGL KLRSPKVRGQ bmy_09157T0/1-896 SSDIEEFLRE AACMKEFDHP HVAKLVGEPL LGGGKCKIGL KLCSPKVRGQ ENSTTRP00000002623/1-869 SSDIEEFLRE AACMKEFDHP HVAKLV---- ---------- ---------- 651 700 ENSP00000263798/1-890 ---------- ---------- ---------- GVSLRSRAKG RLPIPMVILP ENSBTAP00000002222/1-889 ---------- ---------- ---------- GVSLRSRAKG RLPIPMVILP BACU008505/1-921 SVGENFGLRL VSKQTPKEQG AAWLKSDQAL GVSLRSRAKG RLPIPMVILP bmy_09157T0/1-896 SVGEKFGLRL VSKQTPKEQG AAWLKSDQTL GVSLRSRAKG RLPIPMVILP ENSTTRP00000002623/1-869 ---------- ---------- ---------- GVSLRSRAKG RLPTPMVILP 701 750 ENSP00000263798/1-890 FMKHGDLHAF LLASRIGENP FNLPLQTLIR FMVDIACGME YLSSRNFIHR ENSBTAP00000002222/1-889 FMKHGDLHAF LLSSRIGENP FNLPLQTLVR FMVDIACGME YLSSRNFIHR BACU008505/1-921 FMKHGDLHAF LLASRIGENP FNLPLQTLVR FMVDIACGME YLSSRNFIHR bmy_09157T0/1-896 FMKHGDLHAF LLASRIGENP FNLPLQTLVR FMVDIACGME YLSSRNFIHR ENSTTRP00000002623/1-869 FMKHGDLHAF LLASRIGENP FNLPLQTLVR FMVDIACGME YLSSRNFIHR 751 800 ENSP00000263798/1-890 DLAARNCMLA EDMTVCVADF GLSRKIYSGD YYRQGCASKL PVKWLALESL ENSBTAP00000002222/1-889 DLAARNCMLA EDMTVCVADF GLSRKIYSGD YYRQGCASKL PVKWLALESL BACU008505/1-921 DLAARNCMLA EDMTVCVADF GLSRKIYSGD YYRQGCASKL PVKWLALESL bmy_09157T0/1-896 DLAARNCMLA EDMTVCVADF GLSRKIYSGD YYRQGCASKL PVKWLALESL ENSTTRP00000002623/1-869 DLAARNCMLA EDMTVCVADF GLSRKIYSGD YYRQGCASKL PVKWLALESL 801 850 ENSP00000263798/1-890 ADNLYTVQSD VWAFGVTMWE IMTRGQTPYA GIENAEIYNY LIGGNRLKQP ENSBTAP00000002222/1-889 ADNLYTVHSD VWAFGVTMWE IVTRGQTPYA GIENAEIYNY LIGGNRLKQP BACU008505/1-921 ADNLYTVQSD VWAFGVTMWE IMTRGQTPYA GIENAEIYNY LIGGNRLKQP bmy_09157T0/1-896 ADNLYTVHSD VWAFGVTMWE IMTRGQTPYA GIENAEIYNY LIGGNRLKQP ENSTTRP00000002623/1-869 ADNLYTVHSD VWAFGVTMWE IMTRGQTPYA GIENAEIYNY LIGGNRLKQP 851 900 ENSP00000263798/1-890 PECMEDVYDL MYQCWSADPK QRPSFTCLRM ELENILGQLS VLSASQDPLY ENSBTAP00000002222/1-889 PECMEDVYEL MYQCWSADPK QRPSFTCLRM ELETVLGRLS VLSASQDPLY BACU008505/1-921 PECMEDVYEL MYQCWSADPK QRPSFTCLRM ELENVLGRLS VLSASQDPLY bmy_09157T0/1-896 PECMEDVYEL MYQCWSADPK QRPSFTCLRM ELENVLGRLS VLSASQDPLY ENSTTRP00000002623/1-869 PECMEDVYEL MYQCWSADPK QRPSFTCLRM ELENVLGRLS VLSASQDPLY 901 950 ENSP00000263798/1-890 INIERAEEPT AGGSLELPGR DQPYSGAGDG SGMGAVGGTP SDCRYILTPG ENSBTAP00000002222/1-889 INLEGAQEPT EGGDLELPGG DQASSGAGDG SGLGAVGGTP SDYRYILSPG BACU008505/1-921 INLEGAQESA EGGNLELPGG DPASSGAGDG SGPGAMGGTP SDCRYILSPG bmy_09157T0/1-896 INLEGAQESA EGGNLELPGG DPASSGAGDG SGPGAVGGTP SDCRYILSPG ENSTTRP00000002623/1-869 INLEGAQESA EGGNLELPGG DPASSGAGDG SGLGAVGGTP SDCRYILSPG 951 1000 ENSP00000263798/1-890 GLAEQPGQAE HQPESPL--- ---------- -NETQRLLLL QQGLLPHSSC ENSBTAP00000002222/1-889 ELTEQPGHGE QQPESPV--- ---------- -SESQRLLLL QQGLLPHSSC BACU008505/1-921 GLAERPGQEE QQPDSPVMLF RSSSPVDSFG SPCSPAFSTV SLTLSKHFRI bmy_09157T0/1-896 GLAERPGQEE QQPDSPV--- ---------- -SESQRLLLL QQGLLPHSSC ENSTTRP00000002623/1-869 GLAERPGQEE QQPDSPV--- ---------- -NESQRLLLL QQGLLPHSSC 1001 1050 ENSP00000263798/1-890 -------- ENSBTAP00000002222/1-889 -------- BACU008505/1-921 MKNIWSYL bmy_09157T0/1-896 -------- ENSTTRP00000002623/1-869 --------