KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:03 2014 Check: 00 .. Name: ENSP00000233969/1-812 Len: 838 Check: 8447 Weight: 1.00 Name: ENSBTAP00000002235/1-810 Len: 838 Check: 1332 Weight: 1.00 Name: ENSTTRP00000010602/1-817 Len: 838 Check: 5342 Weight: 1.00 Name: bmy_09499T0/1-487 Len: 838 Check: 2176 Weight: 1.00 Name: BACU004064/1-697 Len: 838 Check: 2771 Weight: 1.00 // 1 50 ENSP00000233969/1-812 MEPLGNWRSL RAPLPP---- --MLLLLLLQ VAGPVGALAE TLLNAPRAMG ENSBTAP00000002235/1-810 MEPAGPGLRG QAPL------ --LLLLLLLQ AAGPAGARAE TLLDAPRARG ENSTTRP00000010602/1-817 MEPAGTRRSR RTPPQPPQPL LLLLMLLLQQ VAGPAGALAE TLLDAPRVMG bmy_09499T0/1-487 ---------- ---------- ---------- ---------- ---------- BACU004064/1-697 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000233969/1-812 TSSSPPSPAS VVAPGTTLFE ESRLPVFTLD YPHVQIPFEI TLWILLASLA ENSBTAP00000002235/1-810 TSSIPPSPAS VVAPGTTPFE ESRLPVFTLD YPHVQIPFEI TLWILLASLA ENSTTRP00000010602/1-817 TSSSPPSPAS VVAPGTTPFE ESRLPVFTLD YPHVQIPFEI TLWILLASLA bmy_09499T0/1-487 ---------- ---------- ---------- ---------- ---------- BACU004064/1-697 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000233969/1-812 KIGFHLYHKL PTIVPESCLL IMVGLLLGGI IFGVDEKSPP AMKTDVFFLY ENSBTAP00000002235/1-810 KIGFHLYHKL PTIVPESCLL IMVGLLLGGI IFGVDEKSPP AMKTDVFFLY ENSTTRP00000010602/1-817 KIGFHLYHKL PTIVPESCLL IMVGLLLGGI IFGVDEKSPP AMNTDVFFLY bmy_09499T0/1-487 ---------- ---------- ---------- ---------- ---------- BACU004064/1-697 ---------- ---------- ---------- ---------- -MKTDVFFLY 151 200 ENSP00000233969/1-812 LLPPIVLDAG YFMPTRPFFE NIGTIFWYAV VGTLWNSIGI GVSLFGICQI ENSBTAP00000002235/1-810 LLPPIVLDAG YFMPTRPFFE NIGTIFWYAV VGTLWNSIGI GVSLFGICQI ENSTTRP00000010602/1-817 LLPPIVLDAG YFMPTRPFFE NIGTIFWYAV VGTLWNSIGI GVSLFGICQI bmy_09499T0/1-487 ---------- ---------- ---------- -------MGI D--------- BACU004064/1-697 LLPPIVLDAG YFMPTRPFFE NIGTIFWYAV VGTLWNSIGI GVSLFGICQI 201 250 ENSP00000233969/1-812 EAFGLSDITL LQNLLFGSLI SAVDPVAVLA VFENIHVNEQ LYILVFGESL ENSBTAP00000002235/1-810 EAFGLSDITL LQNLLFGSLI SAVDPVAVLA VFENIHVNEQ LYILVFGESL ENSTTRP00000010602/1-817 EAFGLSDITL LQNLLFGSLI SAVDPVAVLA VFENIHVNEQ LYILVFGESL bmy_09499T0/1-487 ---------- ---------- ---------- --EDLQRQ-- ---------- BACU004064/1-697 EAFGLSDITL LQNLLFGSLI SAVDPVAVLA VFENIQVNEQ LYILVFGESL 251 300 ENSP00000233969/1-812 LNDAVTV--- ---------- ------VLYN LFKSFCQMKT IETIDVFAGI ENSBTAP00000002235/1-810 LNDAVTV--- ---------- ------VLYN LFKSFCQMKT IETVDVFAGI ENSTTRP00000010602/1-817 LNDAVTV--- ---------- ------VLYH LFKSFCQMKT IEXXXXXXXX bmy_09499T0/1-487 ---------- ---------- ---------- ---------- ---------- BACU004064/1-697 LNDAVTVVSG SVYNGWEVME SFLVVKVLYN LFKSFCQMKT IETIDVFAGI 301 350 ENSP00000233969/1-812 ANFFVVGIGG VLIGIFLGFI AAFTTRFTHN IRVIEPLFVF LYSYLSYITA ENSBTAP00000002235/1-810 ANFFVVGIGG VLIGIFLGFI AAFTTRFTHN IRVIEPLFVF LYSYLSYITA ENSTTRP00000010602/1-817 XXXXXXXXXX XXXXXXXXXX XXXXXRFTHN IRVIEPLFVF LYSYLSYITA bmy_09499T0/1-487 ---------- ---------- ---------- ---------- ---------- BACU004064/1-697 ANFFVVGIGG VLIGIFLGFI AAFTTRFTHN IRVIEPLFVF LYSYLSYITA 351 400 ENSP00000233969/1-812 EMFHLSGIMA ITACAMTMNK YVEENVSQKS YTTIK-YFMK MLSSVSETLI ENSBTAP00000002235/1-810 EMFHLSGIMA ITACAMTMNK YVEENVSQKS YTTIK-YFMK MLSSVSETLI ENSTTRP00000010602/1-817 EMFHLSGIMA IIACAMTMNK YVEENVSQKS YTTIK-YFMK MLSSVSETLI bmy_09499T0/1-487 ---------- ITACAMTMNK YVEENVSQKS YTTIK-YFMK MLSSVSETLI BACU004064/1-697 EMFHLSGIVA ITACAMTMNK YVEENVSQKY YTTIKXXXXX XXSSVSETLI 401 450 ENSP00000233969/1-812 FIFMGVSTVG KNHEWNWAFV CFTLAFCLMW RALGVFVLTQ VINRFRTIPL ENSBTAP00000002235/1-810 FIFMGVSTVG KNHEWNWAFV CFTLAFCLIW RALGVFVLTQ VINWFRTIPL ENSTTRP00000010602/1-817 FIFMGVSTVG RNHEWNWAFV CFTLAFCLIW RALGVFVLTQ AINWFRTIPL bmy_09499T0/1-487 FIFMGVSTVG KNHEWNWAFV CFTLAFCLIW RALGVFVLTQ VINWFRTIPL BACU004064/1-697 FIFMGVSTVG KNHEWNWAFV CFTLAFCLIW RALGVFVLTQ VINWFRTIPL 451 500 ENSP00000233969/1-812 TFKDQFIIAY GGLRGAICFA LVFLLPAAVF PRKKLFITAA IVVIFFTVFI ENSBTAP00000002235/1-810 TFKDQFIIAY GGLRGAICFA LVFLLPSSVF PRKKLFITAA IVVIFFTVFI ENSTTRP00000010602/1-817 TFKDQFIIAY GGLRGAICFA LVFLLPAAVF PRKKLFITAA IVVIFFTVFI bmy_09499T0/1-487 TFKDQFIIAY GGLRGAICFA LVFLLPAAVF PRKKLFITAA IVVIFFTVFI BACU004064/1-697 TFKDQFIIAY GGLRGAICFA LVFLLPAAVF PRKKLFITAA IVVIFFTVFI 501 550 ENSP00000233969/1-812 LGITIRPLVE FLDVKRSNKK QQAVSEEIYC RLFDHVKTGI EDVCGHWGHN ENSBTAP00000002235/1-810 LGITIRPLVE FLDVKRSNKK QQAVSEEIHC RFFDHVKTGI EDVCGHWGHN ENSTTRP00000010602/1-817 LGITIRPLVE FLDVKRSNKK QQAVSEEIHC RFFDHVKTGI EDVCGHWGHN bmy_09499T0/1-487 LGITIRPLVE FLDVKRSNKK QQAVSEEIHC RFFDHVKTGI EDVCGHWGHN BACU004064/1-697 LGITIRPLVE FLDVKRSNKK QQAVSEEIHC RFFDHVKTGI EDVCGHWGHN 551 600 ENSP00000233969/1-812 FWRDKFKKFD DKYLRKLLIR ENQPKSSIVS LYKKLEIKHA IEMAETGMIS ENSBTAP00000002235/1-810 FWRDKFKKFD DKYLRKLLIR ENQPKSSIVS LYKKLEIKHA IEMAETGMIS ENSTTRP00000010602/1-817 FWRDKFKKFD DKYLRRLLIR ENQPKSSIVS LYKKLEIKHA IEMAETGMIS bmy_09499T0/1-487 FWRDKFKKFD DKYLRRLLIR ENQPKSSIVS LYKKLEIKHA IEMAETGMIS BACU004064/1-697 FWRDKFKKFD DKYLRRLLIR ENQPKSSIVS LYKKLEIKHA IEMAETGMIS 601 650 ENSP00000233969/1-812 TVPTFASLND CREEKIRKVT SSETDEIREL LSRNLYQIRQ RTLSYNRHSL ENSBTAP00000002235/1-810 TVPSFASLND CREEKVRKLT PGEMDEIREI LSRNLYQIRQ RTLSYNRHNL ENSTTRP00000010602/1-817 TVPSFASLND CREEKIRKLT PGEMDEIREI LSRNLYQIRQ RTLSYNRHNL bmy_09499T0/1-487 TVPSFASLND CREEKIRKLT PGEMDEIREI LSRNLYQIRQ RTLSYNRHNL BACU004064/1-697 TVPSFASLND CREEKIRKLT PGEMDEIREI LSRNLYQIRQ RTLSYNRHNL 651 700 ENSP00000233969/1-812 TADTSERQAK EILIRRRHSL RESIRKDSSL NREHRASTST SRYLSLPKNT ENSBTAP00000002235/1-810 TADTSERQAK EILIRRRHSL RESIRKDSSL NREHRASTST SRYLSLPKNT ENSTTRP00000010602/1-817 TADTSERQAK EILIRRRHSL RESVRKDSSL NREHRVSTST SRYLSLPKNT bmy_09499T0/1-487 TADTSERQAK EILIRRRHSL RESIRKDSSL NREHRASTST SRYLSLPKNT BACU004064/1-697 TADTSERQAK EILIRRRHSL RESIRKDSSL NREHRASTST SRYLSLPKNT 701 750 ENSP00000233969/1-812 KLPEKLQKRR TISIADGNSS DSDADAGTTV LNLQPRARRF LPEQFSKKSP ENSBTAP00000002235/1-810 KLPEKLQKKK NVSNAGGNSS DSDLEAGTTV LNLQPRARRF LPEQFSKKAP ENSTTRP00000010602/1-817 KLPEKLQKKK NISNAGGNSS DSDPDVGTTV LN-QPRARRF LPEQFSKKAP bmy_09499T0/1-487 KLPEKLQKKK NISNAGGNSS DSDPDVGTTV LNLQPRARRF LPEQFSKKAP BACU004064/1-697 KLPEKLQKKK NISNAGGNGS DSDPDVGTTV LNLQPRARRF LPEQFSKKAP 751 800 ENSP00000233969/1-812 QSYKMEWKNE VDVDSGRDMP STPPTPHSRE KGTQTSGLLQ QPLLSKDQSG ENSBTAP00000002235/1-810 QAYKMEWKNE VDMDSRQDQP RSSPAAHSKE GSPQTPGVLC QPLLSKGHFG ENSTTRP00000010602/1-817 QAYKMEWKNE ADADSRQAQP CSSPAAHSKE GGPQAPGVLC QPLLSKGHFS bmy_09499T0/1-487 QAYKMEWKNE VGADSGPGQP CSSPAAHSKE GAPQAPGVLC QPLLSKGHFG BACU004064/1-697 QAYKMEWKNE VGADSGPGQP CSSPAAHSKE GGPQAPGVLC QPLLSKGHFG 801 850 ENSP00000233969/1-812 SEREDSLTEG IPPKPPPRLV WRASEPGSRK ARFGSEKP ENSBTAP00000002235/1-810 SVRGDRVHEG IQPKPPPRLV RRASEPGNRK GRFGSEKP ENSTTRP00000010602/1-817 SMRGDHMNEG IRPKAPPRLV RRASEPGNRK GRFGIEKP bmy_09499T0/1-487 SVRGDRMNEG IRPKAPPRLV RRASEPGNRK GRFGSEKP BACU004064/1-697 SVRGDRMNEG IRPKAPPRLV RRASEPGNRK GRFGSEKP