KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:03 2014 Check: 00 .. Name: ENSP00000216129/1-644 Len: 681 Check: 5173 Weight: 1.00 Name: bmy_22128T0/1-606 Len: 681 Check: 9501 Weight: 1.00 Name: ENSBTAP00000002240/1-655 Len: 681 Check: 1844 Weight: 1.00 Name: ENSTTRP00000006984/1-627 Len: 681 Check: 6683 Weight: 1.00 Name: BACU013447/1-511 Len: 681 Check: 9232 Weight: 1.00 // 1 50 ENSP00000216129/1-644 MEAERGPERR PA-------- ---ERSSPGQ ------TPEE GAQ-ALAEFA bmy_22128T0/1-606 MQADARLERG SRVLTPQSAP SLEPDPELGP ------DPEE DAR-ARAKFA ENSBTAP00000002240/1-655 MQADPTPERS SRVLT----- ---PDPEPGP GSESVLDPEQ DARAALAEFA ENSTTRP00000006984/1-627 ---------- ---------- ----DPELGP ------DPEE DAR-ARAKFA BACU013447/1-511 ---------- ---------- ----MGSPAN ------TPSC G--------- 51 100 ENSP00000216129/1-644 ALHGPALRAS GVPERYWGRL LHKLEHEVFD AGEVFGIMQV EEVEEE--ED bmy_22128T0/1-606 ALHGPALRAS GVPERYWGRL LHKLEHEVFD AGEMFGIMQV EEVEEDESED ENSBTAP00000002240/1-655 ALHGPALRAS GVPERYWGRL LHKLEHEVFD AGEMFGIMQV EEAEEEESED ENSTTRP00000006984/1-627 ALHGPALRAS GVPERYWDRL LHKLEHEVFD AGEMFGIMQV QEVEEDESED BACU013447/1-511 ---------- --P------- ------QVFD AGEMFGIMQV EEVEEDEGED 101 150 ENSP00000216129/1-644 EAAREVRKQQ PNPGNELCYK VIVTRESGLQ AAHPNSIFLI DHAWTCRVEH bmy_22128T0/1-606 EAARELRK-K PNPGGELCYK VIVTNENGLQ AADPNSIFLI DHAWTCRMAH ENSBTAP00000002240/1-655 EAAQEARK-K PNPGGELCYK VIVTNENGLQ AADPNSIFLI DHAWTCRVTH ENSTTRP00000006984/1-627 EAAQEARK-K PNPGGQLCYK VIVTNENGLQ AADPNSIFLI DHAWTCRVAH BACU013447/1-511 EAARELRK-K PNPGGELCYK VIVTNENGLQ AADPNSIFLI DHAWTCRMAH 151 200 ENSP00000216129/1-644 ARQQLQQVPG LLHRMANLMG IEFHGELPST EAVALVLEEM WKFNQTYQLA bmy_22128T0/1-606 ARQQLQQVPG LLHRMANLMG IEFHGELPSA EAVDLVLEEM WKFNQTYQLA ENSBTAP00000002240/1-655 ARQQLQQVPG LLHRMANLMG IEFHGELPSA EAVDLVLEEM WKFNQTYQLA ENSTTRP00000006984/1-627 ARQQLQQVPG LLHRMANLMG IEFHGELPST EAVDLVLEEM WKFNQTYQLA BACU013447/1-511 ARQQLQQVPG LLHRMANLMG IEFHGELPSA EAVDLVLEEM WKFNQTYQLA 201 250 ENSP00000216129/1-644 HGTAEEKMPV WYIMDEFGSR IQHADVPSFA TAPFFYMPQQ VAYTLLWPLR bmy_22128T0/1-606 HGTAEEKVPV WYIMDEFGSR IQHADVPSFA TAPFFYMPQR VAYTLLWPLR ENSBTAP00000002240/1-655 HGTAEEKVPV WYIMDEFGSR IQHADVPSFA TAPFFYMPQQ VAYTLLWPLR ENSTTRP00000006984/1-627 HGTAEEKVPV WYIMDEFGSR IQHADVPSFA TAPFFYMPQR VAYTLLWPLR BACU013447/1-511 HGTAEEKVPV WYIMDEFGSR IQHADVPSFA TAPFFYVPQR VAYTLLWPLR 251 300 ENSP00000216129/1-644 DLDTGEEVTR DFAYGETDPL IRKCMLLPWA PTDMLDLSSC TPEPPAEHYQ bmy_22128T0/1-606 DLDTGEEVTR DFAYGEADPL IRRCVLLPWA PADLLDLSSS TPEPPDEHYQ ENSBTAP00000002240/1-655 DLDTGEEVTR DFAYGEADPL IRRCMLLPWA PTDLLDLSSS TPEPPAEHYQ ENSTTRP00000006984/1-627 DLDTGEEVTR DFAYGEADPL IRRCVLLPWA PADLLDLSSS TPEPADEHYQ BACU013447/1-511 DLDTGEEVTR DFAYGEADPL IRRCVLLPWA PADLRDLSSS TPEPPDEHYQ 301 350 ENSP00000216129/1-644 AILEENKEKL PLDINPVVHP HGHIFKVYTD VQQVASSLTH PRFTLTQSEA bmy_22128T0/1-606 AILEENKEKL PVAINPAVYP CDHVFKVYTD IRQVLSHLTH PRFTFTQSEA ENSBTAP00000002240/1-655 AILEENKEKL PLAISPAGYP CDHVFKVYTD IQQVLSHLTH PRFTFTQSEA ENSTTRP00000006984/1-627 AILEENKEKL PLAIKPAVYP CDHVFKVYTD VQQVLGHLSH PRFTFTQSEA BACU013447/1-511 AILEENKEKL PVAINPAVYP CDHVFKVYTD IRQVLSHLTH PRFTFTQSEA 351 400 ENSP00000216129/1-644 DADILFNFSH FKDYRKLSQE RPGVLLNQFP CENLLTVKDC LASIARRAGG bmy_22128T0/1-606 DADILYNFSH FKDY------ ---------- ---------- ---------- ENSBTAP00000002240/1-655 EADVLYNFSH FKDYRRLSQE RPNVLLNQFP CESLLTVKDC LASVARRAGG ENSTTRP00000006984/1-627 DAHILYHFSH LKDYRRLSRE RPSVLLNQFP CENLLTVKDC LASVARRAGG BACU013447/1-511 DADILYNFSH SKDY------ ---------- ---------- ---------- 401 450 ENSP00000216129/1-644 PEGPPWLPRT FNLRTELPQF VSYFQQRERW GEDNHWICKP WNLARSLDTH bmy_22128T0/1-606 ---------- ---------- ---------R GEDNHWICKP WNLARSLDTH ENSBTAP00000002240/1-655 PEGPAWLPRT FNLRTELPQF ISYFQQRERR GEDNHWICKP WNLARSLDTH ENSTTRP00000006984/1-627 PEGPAWLPRT FNLRTELPQF VSYFQQRERR GEDNHWICKP WNLARSLDTH BACU013447/1-511 ---------- ---------- ---------R GEDNHWICKP WNLARSLDTH 451 500 ENSP00000216129/1-644 VTKSLHSIIR HRESTPKVVS KYIESPVLFL REDVGKVKFD IRYIVLLRSV bmy_22128T0/1-606 ITKSLHSIIR HRESSPKVVS KYIESPVLFL REDVGRVKFD IRYIVLLRSV ENSBTAP00000002240/1-655 ITKNLHSIVR HRESSPKVVS KYIESPVLFL REDVGRVKFD IRYILLLRSV ENSTTRP00000006984/1-627 ITKNLHSIIR HRESSPKVVS KYIESPVLFL REDVGRVKFD IRYIVLLRSV BACU013447/1-511 ITKSLHSIIR HRESSPKVVS KYIESPVLFL REDVGRVKFD IRYIVLLRSV 501 550 ENSP00000216129/1-644 RPLRLFVYDV FWLRFSNRAF ALNDLDDYEK HFTVMNYDPD VVLKQVHCEE bmy_22128T0/1-606 KPLTLFVYDV FWLRFSNRPF ALNDLDDYEK HFTVMNYDPE LVLKQMHCDE ENSBTAP00000002240/1-655 KPLRLFVYDV FWLRFSNRPF ALNDLDDYEK HFTVMNYDPE VVLKQVHYNE ENSTTRP00000006984/1-627 KPLTLFVYDV FWLRFSNRPF ALNDLDDYEK HFTVMNYDPE LVLKQMHYDE BACU013447/1-511 KPLTLFVYDV FWLRFSNRPF ALNDLDDYEK HFTVMNYDPE LVLK------ 551 600 ENSP00000216129/1-644 FIPEFEKQYP EFPWTDVQAE IFRAFTELFQ VACAKPPPLG LCDYPSSRAM bmy_22128T0/1-606 FVPEFEKQYP AFPWKSVQAD IFQAFTELFQ VACARPPPLG FCDYPSSRAM ENSBTAP00000002240/1-655 FIPEFEKQYP EFPWKSVQAE IFQAFTELFQ VACARPPPLG LCDYPSSRAV ENSTTRP00000006984/1-627 FVPEFEKQYP EFPWKSVQAE IFQAFTELFQ VACA--PPLG LC-YPSSR-M BACU013447/1-511 ---------- -------QAD IFQAFTELFQ VACARPPPLG FCDYPSSRAM 601 650 ENSP00000216129/1-644 YAVDLMLKWD NGPDGRRVMQ PQILEVNFNP --------DC ERACRYHPTF bmy_22128T0/1-606 YAIDLMLKWD SRPD--EVLT PLISENQTTP RKTIKLGFQG PRRLVAVETV ENSBTAP00000002240/1-655 YAVDLMLKWD SRPDGERVMQ PQILEVNFNP --------DC ERACRYHPSF ENSTTRP00000006984/1-627 YAID-MLKWD SRPDGKQVMQ PQLLEVNFNP --------DC ERACRCHPTF BACU013447/1-511 YAIDLMLKWD SRPDGKQVMQ PQLLEVNFNP --------DC ERACRCYPAF 651 700 ENSP00000216129/1-644 FNDVFSTLFL DQPGGCHVTC LV-------- - bmy_22128T0/1-606 LIPLNTFWYP SSPVSFSXLR IHQKSDSDVW A ENSBTAP00000002240/1-655 FNDVFSTLFL DEPDGCPVTR LL-------- - ENSTTRP00000006984/1-627 FNDVFSTLYL DEPDSCPVTR LV-------- - BACU013447/1-511 FNDVFSTLYL DEPDSCPVTR LV-------- -