KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:04 2014 Check: 00 .. Name: BACU010820/1-294 Len: 366 Check: 3105 Weight: 1.00 Name: ENSP00000463999/1-344 Len: 366 Check: 1534 Weight: 1.00 Name: ENSBTAP00000002250/1-344 Len: 366 Check: 2846 Weight: 1.00 Name: bmy_01711T0/1-365 Len: 366 Check: 4446 Weight: 1.00 Name: ENSTTRP00000009790/1-250 Len: 366 Check: 6389 Weight: 1.00 // 1 50 BACU010820/1-294 MALPPADGSV WP-----QHP APESPPEGAC HPICTCPHEL L-----QCPA ENSP00000463999/1-344 -MAQKENSYP WPYGRQTAPS GLSTLPQRVL RKEPVTPSAL VLMSRSNVQP ENSBTAP00000002250/1-344 -MAQKENAYP WPYGRQTAQP GLNTLPQRVL RKEPVTPSAL VLMSRSNAQP bmy_01711T0/1-365 -MAQKENAYP WPYGRQTAQS GLNTLPQRVL RKEPVTPSAL VLMSRSNAQP ENSTTRP00000009790/1-250 -MAQKENAYP WPYGRQTAQS GLNTLPQRVL RKEPVTPSAL VLMSRSNAQP 51 100 BACU010820/1-294 HSAPVQKVVE NSSGTPSFSI CSFPIDDFEI GHPLGKGKFG NVYWAWEKKS ENSP00000463999/1-344 TAAPGQKVME NSSGTPDILT RHFTIDDFEI GRPLGKGKFG NVYLAREKKS ENSBTAP00000002250/1-344 TAAPGQKVVE NSSGTPNIPK RSFTIDDFEI GRPLGKGKFG NVYLAREKKS bmy_01711T0/1-365 TAVPLQKVVE NNSGTPNFSM RSFTIDDFEI GRPLGKGKFG NVYLAREKKS ENSTTRP00000009790/1-250 TAAPLQKVVE NNSRTPNFSM RSFTIDDFEI GRPLGKGKFG NVYLAREKKS 101 150 BACU010820/1-294 HFIVALQVLF KSQIEKEGVE HQLRRETETQ AHLQ------ ---------- ENSP00000463999/1-344 HFIVALKVLF KSQIEKEGVE HQLRREIEIQ AHLH------ ---------- ENSBTAP00000002250/1-344 HFIVALKVLF KSQIEKEGVE HQLRREIEIQ AHLQ------ ---------- bmy_01711T0/1-365 RFIVALKVLF KSQIEKEGVE HQLRREIEIQ AHLQYGSTPL ASEMQPDASS ENSTTRP00000009790/1-250 HFIVALKVLF KSQIEKEGVE HQLRREIEIQ AHLQ------ ---------- 151 200 BACU010820/1-294 -----HPNIL HLYSYFYDRQ RIYLILE--- ----YKNLQK SRTFDEKRTA ENSP00000463999/1-344 -----HPNIL RLYNYFYDRR RIYLILEYAP RGELYKELQK SCTFDEQRTA ENSBTAP00000002250/1-344 -----HPNIL RLYNYFYDRR RIYLILEYAP RGELYKELQK SRTFDEQRTA bmy_01711T0/1-365 VSSPRHPNIL RLYNYFYDRR RIYLILEYAP RGELYKELQK SRTFDEQRTA ENSTTRP00000009790/1-250 -----HPNIL RLYNYFYDRR RIYLILEYAP RGELYKELQK SHTFDEQRTA 201 250 BACU010820/1-294 TIMEELADAL IYCHGKKVIH RDVKPENLLL GLQGEPKIAD FGWSVHAPSL ENSP00000463999/1-344 TIMEELADAL MYCHGKKVIH RDIKPENLLL GLKGELKIAD FGWSVHAPSL ENSBTAP00000002250/1-344 TIMEELADAL TYCHAKKVIH RDIKPENLLL GLRGELKIAD FGWSVHAPSL bmy_01711T0/1-365 TIMEELADAL IYCHGKKVIH RDIKPENLLL GLQGELKIAD FGWSVHAPSL ENSTTRP00000009790/1-250 TIMEELADAL IYCHGKKVIH RDIKPENLLL GLQGELKIAD FGWSVHAPSL 251 300 BACU010820/1-294 RRKTMCGTLD YMPPEMIEGR MHNEKVDLWC IRVLCYKLLV GNAPLQECFP ENSP00000463999/1-344 RRKTMCGTLD YLPPEMIEGR MHNEKVDLWC IGVLCYELLV GNPPFESASH ENSBTAP00000002250/1-344 RRKTMCGTLD YLPPEMIEGR THNEKVDLWC IGVLCYELLV GNPPFESASH bmy_01711T0/1-365 RRKTMCGTLD YLPPEMIEGR THNEKVDLWC IGVLCYELLV GNPPFESASH ENSTTRP00000009790/1-250 RRKTMCGTLD YLPPEMIEGR TH-------- ---------- ---------- 301 350 BACU010820/1-294 KQDATVHRQG GPEVPPFHA- ---------- RRSPGAHLQA AQA------- ENSP00000463999/1-344 NETYRRIVKV DLKFPASVPM GAQDLISKLL RHNPSERLPL AQVSAHPWVR ENSBTAP00000002250/1-344 NETYRRIVKV DLKFPPSVPL GAQDLIYKLL KHNPSERLPL AQVSAHPWVR bmy_01711T0/1-365 NETYRRIVKV DLKFPPSMPA GAQDLISKLL KHNPSERLPL AQVSAHPWVR ENSTTRP00000009790/1-250 ---------- ---------- ---------- ---------- ---------- 351 400 BACU010820/1-294 ---------- ------ ENSP00000463999/1-344 ANSRRVLPPS ALQSVA ENSBTAP00000002250/1-344 THSRRVLPPS APQSVP bmy_01711T0/1-365 AHSRRVLPPS ALQSVP ENSTTRP00000009790/1-250 ---------- ------