KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:06 2014 Check: 00 .. Name: BACU009147/1-815 Len: 838 Check: 2873 Weight: 1.00 Name: ENSBTAP00000002268/1-553 Len: 838 Check: 3358 Weight: 1.00 Name: bmy_14660T0/1-487 Len: 838 Check: 6041 Weight: 1.00 Name: ENSP00000322716/1-553 Len: 838 Check: 2561 Weight: 1.00 Name: ENSTTRP00000005198/1-553 Len: 838 Check: 2706 Weight: 1.00 // 1 50 BACU009147/1-815 MPGAVRLRGT PGPRLGVWLG LPGKEESRRA RGAISSGQAR RNLRCDGTDL ENSBTAP00000002268/1-553 ---------- ---------- ---------- -------MAA VSLRLGDLVW bmy_14660T0/1-487 ---------- ---------- ---------- ---------- ---------- ENSP00000322716/1-553 ---------- ---------- ---------- -------MAA VSLRLGDLVW ENSTTRP00000005198/1-553 ---------- ---------- ---------- -------MAA VSLRLGDLVW 51 100 BACU009147/1-815 GKLGRYPPWP GKIVNPPKDL KKPRGKKCFF VKFFGTEDHA WIKVEQLKPY ENSBTAP00000002268/1-553 GKLGRYPPWP GKIVNPPKDL KKPRGKKCFF VKFFGTEDHA WIKVEQLKPY bmy_14660T0/1-487 ---------- ---------- ---------- --MFSAS--A WIKVEQLKPY ENSP00000322716/1-553 GKLGRYPPWP GKIVNPPKDL KKPRGKKCFF VKFFGTEDHA WIKVEQLKPY ENSTTRP00000005198/1-553 GKLGRYPPWP GKIVNPPKDL KKPRGKKCFF VKFFGTEDHA WIKVEQLKPY 101 150 BACU009147/1-815 HAHKEEMIKI NKGKRFQQAV DAVEEFLRRA KGKDQTSSHS SADDKNRRNS ENSBTAP00000002268/1-553 HAHKEEMIKI NKGKRFQQAV DAVEEFLRRA KGKDQTSSHS SADDKNRRNS bmy_14660T0/1-487 HAHKEEMIKI NKGKRFQQAV DAVEEFLRRA KGKDQTSSHS SADDKNRRNS ENSP00000322716/1-553 HAHKEEMIKI NKGKRFQQAV DAVEEFLRRA KGKDQTSSHN SSDDKNRRNS ENSTTRP00000005198/1-553 HAHKEEMIKI NKGKRFQQAV DAVEEFLRRA KGKDQTSSHS SADDKNRRNS 151 200 BACU009147/1-815 SEERSRPNSG DEKRKLSLSE GKVKKNMGEG KKRVSSGSSE RGSKSPLKRA ENSBTAP00000002268/1-553 SEERSRPISG DEKRKLSLSE GKVKKNMGEG KKRVPSGSSE RGSKSPLKRA bmy_14660T0/1-487 SEERSRPNSG DEKRKLSLSE GKVKKNMGEG KKRVSSGSSE RGSKSPLKRA ENSP00000322716/1-553 SEERSRPNSG DEKRKLSLSE GKVKKNMGEG KKRVSSGSSE RGSKSPLKRA ENSTTRP00000005198/1-553 SEERSRPNSG DEKRKLSLSE GKVKKNMGEG KKRVSSGSSE RGSKSPLKRA 201 250 BACU009147/1-815 QEQSPRKRGR PPKDEKDLTI PESSTVKGMM AGPMAAFKWQ PTVSEPVKDA ENSBTAP00000002268/1-553 QEQSPRKRGR PPKDEKDLSI PESSTVKGMM AGPMATFKWQ PNVSEPVKDA bmy_14660T0/1-487 QEQSPRKRGR PPKDEKDLTI PESSTVKGMM AGPMAAFKWQ PTVSEP---- ENSP00000322716/1-553 QEQSPRKRGR PPKDEKDLTI PESSTVKGMM AGPMAAFKWQ PTASEPVKDA ENSTTRP00000005198/1-553 QEQSPRKRGR PPKDEKDLTI PESSTVKGMM AGPMAAFKWQ PTVSEPVKDA 251 300 BACU009147/1-815 DPHFHHFLLS QT-------- ---------E KETGSTSIQA ADSTAVNGSI ENSBTAP00000002268/1-553 DPHFHHFLLS QTEKPAVCYQ AITKKLKICE EETGSTSIQA ADSTAVNGSV bmy_14660T0/1-487 ---------- -----AVCYQ AITKKLKICE EETGSTSIQA ADSTAVNGSI ENSP00000322716/1-553 DPHFHHFLLS QTEKPAVCYQ AITKKLKICE EETGSTSIQA ADSTAVNGSI ENSTTRP00000005198/1-553 DPHFHHFLLS QTEKPAVCYQ AITKKLKICE EETGSTSIQA ADSTAVNGSI 301 350 BACU009147/1-815 TPTDKKIGFL GLGLMGSGIV SNLLKMGHTV TVWNRTAEK- -----EGARL ENSBTAP00000002268/1-553 TPTDKKIGFL GLGLMGSGIV SNLLKMGHTV TVWNRTAEKC DLFIQEGARL bmy_14660T0/1-487 TPTDKKIGFL GLGLMGSGIV SNLLKMGHTV TVWNRTAEKC DLFIQEGARL ENSP00000322716/1-553 TPTDKKIGFL GLGLMGSGIV SNLLKMGHTV TVWNRTAEKC DLFIQEGARL ENSTTRP00000005198/1-553 TPTDKKIGFL GLGLMGSGIV SNLLKMGHTV TVWNRTAEKC DLFIQEGARL 351 400 BACU009147/1-815 GRTPAEVVST CDITFACVSD PKAAKDLVLG PSGVLQGIRP GKCYVDMSTV ENSBTAP00000002268/1-553 GRTPAEVVST CDITFACVSD PKAAKDLVLG PSGVLQGIRP GKCYVDMSTV bmy_14660T0/1-487 GRTPAEVVST CDITFACVSD PKAAKDLVLG PSGVLQGIRP GKCYVDMSTV ENSP00000322716/1-553 GRTPAEVVST CDITFACVSD PKAAKDLVLG PSGVLQGIRP GKCYVDMSTV ENSTTRP00000005198/1-553 GRTPAEVVST CDITFACVSD PKAAKDLVLG PSGVLQGIRP GKCYVDMSTV 401 450 BACU009147/1-815 DADTVTELAQ VIVSRGGRFL EAPVSGNQQL SNDGMLVILA AGDRGLYEDC ENSBTAP00000002268/1-553 DADTVTELAQ VIVSRGGRFL EAPVSGNQQL SNDGMLVILA AGDRGLYEDC bmy_14660T0/1-487 DADTVTELAQ VIVSRGGRFL EAPVSGNQQL SNDGMLVILA AGDRGLYEDC ENSP00000322716/1-553 DADTVTELAQ VIVSRGGRFL EAPVSGNQQL SNDGMLVILA AGDRGLYEDC ENSTTRP00000005198/1-553 DADTVTELAQ VIVSRGGRFL EAPVSGNQQL SNDGMLVILA AGDRGLYEDC 451 500 BACU009147/1-815 SSCFQAMGKT SFFLGEVGNA AKMMLIVNMV QGSFMATIAE GLTLAQVTGQ ENSBTAP00000002268/1-553 SSCFQAMGKT SFFLGEVGNA AKMMLIVNMV QGSFMATIAE GLTLAQVTGQ bmy_14660T0/1-487 SSCFQAMGKT SFFLGEVGNA AKMMLIVNMV QGSFMATIAE GLTLAQVTGQ ENSP00000322716/1-553 SSCFQAMGKT SFFLGEVGNA AKMMLIVNMV QGSFMATIAE GLTLAHVTGQ ENSTTRP00000005198/1-553 SSCFQAMGKT SFFLGEVGNA AKMMLIVNMV QGSFMATIAE GLTLAQVTGQ 501 550 BACU009147/1-815 SQQTLLDILN QGQLASIFLD QKCQNILQGN FKPDFYLKYI QKDLRLAIAL ENSBTAP00000002268/1-553 SQQTLLDILN QGQLASIFLD QKCQNILQGN FKPDFYLKYI QKDLRLAIAL bmy_14660T0/1-487 SQQTLLDILN QGQLASIFLD QKCQNILQGN FKPDFYLKYI QKDLRLAIAL ENSP00000322716/1-553 SQQTLLDILN QGQLASIFLD QKCQNILQGN FKPDFYLKYI QKDLRLAIAL ENSTTRP00000005198/1-553 SQQTLLDILN QGQLASIFLD QKCQNILQGN FKPDFYLKYI QKDLRLAIAL 551 600 BACU009147/1-815 GDAVNHPTPM AAAANEEEEF RWLLHDEVHA VLRQLQDILK EASLRFTLPG ENSBTAP00000002268/1-553 GDAVNHPTPM AAAANE---- ---------- ---------- ---------- bmy_14660T0/1-487 GDAVNHPTPM AAAANE---- ---------- ---------- ---------- ENSP00000322716/1-553 GDAVNHPTPM AAAANE---- ---------- ---------- ---------- ENSTTRP00000005198/1-553 GDAVNHPTPM AAAANE---- ---------- ---------- ---------- 601 650 BACU009147/1-815 SGTEGPTKQE NFILGSCGTD QVKGVLTLQG DALSQADVNL KMPRNNQLLH ENSBTAP00000002268/1-553 ---------- ---------- -----VYKRA KALDQSDNDM ---------- bmy_14660T0/1-487 ---------- ---------- -----VYKRA KALDQSDNDM ---------- ENSP00000322716/1-553 ---------- ---------- -----VYKRA KALDQSDNDM ---------- ENSTTRP00000005198/1-553 ---------- ---------- -----VYKRA KALDQSDNDM ---------- 651 700 BACU009147/1-815 FAFREDKQWK LQQIQDARNH VSQAIYLLAN RDESYQFRTG AEVLKLMDAV ENSBTAP00000002268/1-553 ---------- ---------- --SAVY---- ---------- ---------- bmy_14660T0/1-487 ---------- ---------- --SAVY---- ---------- ---------- ENSP00000322716/1-553 ---------- ---------- --SAVY---- ---------- ---------- ENSTTRP00000005198/1-553 ---------- ---------- --SAVY---- ---------- ---------- 701 750 BACU009147/1-815 MLQLTRARNR LTTPATLTLP EIAASGLTRM FAPALPSDLL VNVYINLNKL ENSBTAP00000002268/1-553 -----RA--- ---------- ---------- ---------- ---YIH---- bmy_14660T0/1-487 -----RA--- ---------- ---------- ---------- ---YIH---- ENSP00000322716/1-553 -----RA--- ---------- ---------- ---------- ---YIH---- ENSTTRP00000005198/1-553 -----RA--- ---------- ---------- ---------- ---YIH---- 751 800 BACU009147/1-815 CLTLHQLHAL QPNSTKNFRP AGGAVLHSPG AMFEWGAQRL EVSHVHKVEC ENSBTAP00000002268/1-553 ---------- ---------- ---------- ---------- ---------- bmy_14660T0/1-487 ---------- ---------- ---------- ---------- ---------- ENSP00000322716/1-553 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005198/1-553 ---------- ---------- ---------- ---------- ---------- 801 850 BACU009147/1-815 VIPWLNDALV FFTVSLQLCQ QLKDKISVFS SYWSYRPF ENSBTAP00000002268/1-553 ---------- ---------- ---------- -------- bmy_14660T0/1-487 ---------- ---------- ---------- -------- ENSP00000322716/1-553 ---------- ---------- ---------- -------- ENSTTRP00000005198/1-553 ---------- ---------- ---------- --------