KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:06 2014 Check: 00 .. Name: ENSP00000325868/1-254 Len: 305 Check: 7686 Weight: 1.00 Name: ENSBTAP00000002271/1-254 Len: 305 Check: 8494 Weight: 1.00 Name: BACU003649/1-170 Len: 305 Check: 1272 Weight: 1.00 Name: ENSTTRP00000012806/1-254 Len: 305 Check: 6464 Weight: 1.00 Name: bmy_04955T0/1-305 Len: 305 Check: 1526 Weight: 1.00 // 1 50 ENSP00000325868/1-254 MTEEVWMGTW RPHRPRGPIM ALYSSPGPKY LIPPTTGFMK HTPTKLRAPA ENSBTAP00000002271/1-254 MAEEVWVGTW RPHRPRGPIM ALYSSPGPKY LIPPTTGFVK HTPTKLRAPA BACU003649/1-170 ---------- ---------M ALYSSPGPKY LIPPTTGFVK HTPNKLRAPA ENSTTRP00000012806/1-254 MAEEAWVGTW RPHRPRGPIM ALYSSPGPKY LIPPTTGFVK HTPDKLRAPA bmy_04955T0/1-305 MAEEVWVGTW RPHRPRGPIM ALYSSPGPKY LIPPTTGFVK HTPSKLRAPA 51 100 ENSP00000325868/1-254 YSFRGAPMLL AENCSPGPRY NVNPKILRTG KDLGPAYSIL GRYQTKTMLT ENSBTAP00000002271/1-254 YSFRGAPMLL AENCSPGPRY SVNPKILRTG KDLGPAYSIL GRYHTKTTLT BACU003649/1-170 YSIHGAPMLL AENCSPGPRY SVNPKILRTG KDLGPAYSIL GRYCTKTTLT ENSTTRP00000012806/1-254 YSFHGAPMLL AENCSPGPRY SVNPKILRTG KDIGPAYSIL GRYCTKTTLT bmy_04955T0/1-305 YSFHGAPVLL AENCSPGPRY SVNPKILRTG KDLGPAYSIL GRYCTKTTLT 101 150 ENSP00000325868/1-254 PGPGDYFPEK STKYVFDSAP SHSISARTKA FRVDSTPGPA AYMLPMVMGP ENSBTAP00000002271/1-254 PGPGDYFPEK STKHVFDSAP SHSISARTKT FRVDSTPGPA AYMLPMVMGP BACU003649/1-170 PGPGDYFPEK STKHVFDLAP SHSISARTKT FRVDSTPGPA AYMLPVVMGP ENSTTRP00000012806/1-254 PGPGHYFPEK STKHVFDSAP SHSISARTKT FRVDSTPGPA AYMLPVVMGP bmy_04955T0/1-305 PGPGDYFPEK STKHVFDLAP SHSISARTKT FRVDSTPGPA AYMLPVVMGP 151 200 ENSP00000325868/1-254 NTVGKASQPS FSIKGRSKLG GFSDDLHK-- ---------- ---------- ENSBTAP00000002271/1-254 HTIGKVSQPS FSIKGRSKLG SFSDDLHK-- ---------- ---------- BACU003649/1-170 HTVGKASQPA FSIKGRSKLG SFSDDLYK-- ---------- ---------- ENSTTRP00000012806/1-254 HTVGKASQPA FSIKGRSKLG SFSDDLHK-- ---------- ---------- bmy_04955T0/1-305 HTVGKASQPA FSIKGRSKLG SFSDDLYKAR HWGTVTWCGH RLETEESPDT 201 250 ENSP00000325868/1-254 ---------- ---------- ---------T PGPAAYRQTD VRVTKFKAPQ ENSBTAP00000002271/1-254 ---------- ---------- ---------T PGPAAYRQTD VQVTKFKAPQ BACU003649/1-170 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012806/1-254 ---------- ---------- ---------T PGPAAYRQTD VQVTKFKAPQ bmy_04955T0/1-305 QTHSDLGPET HCLMPAPALW GHTPWQAEPT PGPAAYRQTN VQVTKFKAPQ 251 300 ENSP00000325868/1-254 YTMAARVEPP GDKTLKPGPG AHSPEKVTLT KPCAPVVTFG IKHSDYMTPL ENSBTAP00000002271/1-254 YTMAARVEPP GDKTLKPGPG AHSPEKVTMT RPCAPVVSFG IKHSDYMTPL BACU003649/1-170 ----ARVARL GQSTA----- ---------- ---------- ---------- ENSTTRP00000012806/1-254 YTMAARVEPP GDKTHKPGPG AHSPEKVTVT KPRAPIVTFG IKHSDYMTPL bmy_04955T0/1-305 YTMAARVEPP GDKTLKPGPG AHSPEKVTVT KPCAPIVTFG IKHSDYMTPL 301 350 ENSP00000325868/1-254 LVDVE ENSBTAP00000002271/1-254 VVDVD BACU003649/1-170 ----- ENSTTRP00000012806/1-254 VVDVD bmy_04955T0/1-305 VVDVE