KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:07 2014 Check: 00 .. Name: ENSP00000379894/1-1134 Len: 1171 Check: 8650 Weight: 1.00 Name: ENSBTAP00000002274/1-1134 Len: 1171 Check: 5976 Weight: 1.00 Name: ENSTTRP00000005209/1-1124 Len: 1171 Check: 558 Weight: 1.00 Name: bmy_14659T0/1-1155 Len: 1171 Check: 790 Weight: 1.00 Name: BACU019029/1-1118 Len: 1171 Check: 3880 Weight: 1.00 // 1 50 ENSP00000379894/1-1134 MSEPHRVQFT SLPGSLNPAF LKKSRKEEAG AGEQHQDCEP AAAAVRITLT ENSBTAP00000002274/1-1134 MSEPHRVQFT SLPGSLNPAF LKKSRKEEVG GAEQHQDSEP AAAAVRITLT ENSTTRP00000005209/1-1124 MSEPHRVQFT SLPGSLNPAF LKKSRKEEVG GAEQHQDSEP AAAAVRITLT bmy_14659T0/1-1155 MSEPHRVQFT SLPGSLNPAF LKKSRKEEVG GAEQHQDSEP AAAAVRITLT BACU019029/1-1118 MSEPHRVQFT SLPGSLNPAF LKKSRKEEVG GAEQHQDSEP AAAAVRITLT 51 100 ENSP00000379894/1-1134 LFEPDHKRCP EFFYPELVKN IRGKVKGLQP GDKKKDLSDP FNDEEKERHK ENSBTAP00000002274/1-1134 LFEPDHKRCP EFFYPELVKN LRGKVKGLQP ADKKKDLLDP FNDEEKERHK ENSTTRP00000005209/1-1124 LFEPDHKRCP EFFYPELVKN LRGKVKGPQP ADKKKDLSDP FNDEEKERHK bmy_14659T0/1-1155 LFEPDHKRCP EFFYPELVKN LRGKVKGPQP ADKKKDLSDP FNDEEKERHK BACU019029/1-1118 LFEPDHKRCP EFFYPELVKN LRGKVKGPQP ADKKKDLSDP FNDEEKERHK 101 150 ENSP00000379894/1-1134 VEALARKFEE KYGGKKRRKD RIQDLIDMGY GYDESDSFID NSEAYDELVP ENSBTAP00000002274/1-1134 VEALARKFEE KYGGKKRRKD RIQDLIDMGY GYDESDSFID NSEAYDELVP ENSTTRP00000005209/1-1124 VEALARKFEE KYGGKKRRKD RIQDLIDMGY GYDESDSFID NSEAYDELVP bmy_14659T0/1-1155 VEALARKFEE KY-------- ---DLIDMGY GYDESDSFID NSEAYDELVP BACU019029/1-1118 VEALARKFEE KYGGKKRRKD RIQDLIDMGY GYDESDSFID NSEAYDELVP 151 200 ENSP00000379894/1-1134 ASLTTKYGGF YINSGTLQFR QASESEDDFI KEKKKKSPKK RKLKEGGEKI ENSBTAP00000002274/1-1134 ASLTTKYGGF YINSGTLQFR QASESEDDFI KEKKKKSPKK RKLKEGGEKI ENSTTRP00000005209/1-1124 ASLTTKYGGF YINSGTLQFR QASESEDDFI KEKKKKSPKK RKLKEGGEKI bmy_14659T0/1-1155 ASLTTKYGGF YINSGTLQFR QASESEDDFI KEKKKKSPKK RKLKEGGEKI BACU019029/1-1118 ASLTTKYGGF YINSGTLQFR QASESEDDFI KEKKKKSPKK RKLKEGGEKI 201 250 ENSP00000379894/1-1134 KKKKKDDTYD KEKKSKKSKF SKAGFTALNA SKEKKKKKYS GALSVKEMLK ENSBTAP00000002274/1-1134 KKKKKDDTYD KEKKSKKSKF SKAGFTALNA SKEKKKKKYS GALSVKEMLK ENSTTRP00000005209/1-1124 KKKKKDDTYD KEKKSKKSKF SKAGFTALNA SKEKKKKKYS GALSVKEMLK bmy_14659T0/1-1155 KKKKKDDTYD KEKKSKKSKF SKAGFTALNA SKEKKKKKYS GALSVKEMLK BACU019029/1-1118 KKKKKDDTYD KEKKSKKSKF SKAGFTALNA SKEKKKKKYS GALSVKEMLK 251 300 ENSP00000379894/1-1134 KFQKEKEAQK KREEEHKPVA VPSAEAQGLR ELEGASDPLL SLFGSTSDND ENSBTAP00000002274/1-1134 KFQKEKEAQR KRDEEHKPIA VSSAEAQGLR ELEGASDPLL SLFGSASDND ENSTTRP00000005209/1-1124 KFQKEKEAQR KRDEEHKPVA VSSVEAQGLR ELEGASDPLL SLFGSTSDND bmy_14659T0/1-1155 KFQKEKEAQR KRDEEHKPIA VSSVEAQGLR ELEGASDPLL SLFGSTSDND BACU019029/1-1118 KFQKEKEAQR KRDEEHKPVA VSSVEAQGLR ELEGASDPLL SLFGSTSDND 301 350 ENSP00000379894/1-1134 LLQAATAMDS LTDLDLEHLL SESPEGSPFR DMDDGSDSLG VGLDQEFRQP ENSBTAP00000002274/1-1134 LLQAATAMDS LTDLDLEQLL SESPEGSPFR DMDDESDSLG VGLDQEFRQP ENSTTRP00000005209/1-1124 LLQAATAMDS LTDLDLEQLL SESPEGSPFR DMDDESDSLG VGLDQEFRQP bmy_14659T0/1-1155 LLQAATAMDS LTDLDLEQLL SESPEGSPFR DMDDESDSLG VGLDQEFRQP BACU019029/1-1118 LLQAATAMDS LTDLDLEQLL SESPEGSPFR DMDDESDSLG VGLDQEFRQP 351 400 ENSP00000379894/1-1134 SSLPEGLPAP LEKRVKELAQ AARAAEGESR QKFFTQDING ILLDIEAQTR ENSBTAP00000002274/1-1134 SSLPEGLPAP LEKRVKELAQ AARAAEGESR QKFFTHDVNG ILLDIEAQTR ENSTTRP00000005209/1-1124 SSLPEGLPAP LEKRVKELAQ AARAAEGESR QKFFTQDING ILLDIEAQTR bmy_14659T0/1-1155 SSLPEGLPAP LEKRVKELAQ AARAAEGESR QKFFTQDING ILLDIEAQTR BACU019029/1-1118 SSLPEGLPAP LEKRVKELAQ AARAAEGESR QKFFTQDING ILLDIEAQTR 401 450 ENSP00000379894/1-1134 ELSSQVRSGV YAYLASFLPC SKDALLKRAR KLHLYE-QGG RLKEPLQKLK ENSBTAP00000002274/1-1134 ELSSQTRSGV YAYLASFLPC SKDTLVKRAR KLHLCEQQGG RLKEPLQKLK ENSTTRP00000005209/1-1124 ELSSQTRSGV YAYLASFLTC SKDTLVKRAR KLHLCE-QGG RLKEPIQKLK bmy_14659T0/1-1155 ELSSQTRSGV YAYLASFLPC SKDTLVKRAR KLHLCE-QGG RLKEPLQKLK BACU019029/1-1118 ELSSQTRSGV YAYLASFLPC SKDTLVKRAR KLHLCE-QGG RLKEPLQKLK 451 500 ENSP00000379894/1-1134 EAIGRAMPEQ MAKYQDECQA HTQAKVAKML EEEKDKEQRD RICSDEEEDE ENSBTAP00000002274/1-1134 EAIGRAMPEQ MAKYQDECQA HTQAKVAKML EEEKDKEQRE RVCSDEEEDE ENSTTRP00000005209/1-1124 EAIDRAMAEQ MAKYRDECQA HTQAKVAKML EEEKDKEQRE RVCSDEEEDE bmy_14659T0/1-1155 EAIGRAMPEQ MAKYQDECQA HTQAKVAKML EEEKDKEQRE RVCSDEEEDE BACU019029/1-1118 EAIGRAMPEQ MAKYQDECQA HTQAKVAKML EEEKDKEQRE RVCSDEEEDE 501 550 ENSP00000379894/1-1134 EKGGRRIMGP RKKFQWNDEI RELLCQVVKI KLESQDLERN NKAQAWEDCV ENSBTAP00000002274/1-1134 EKGGRRIMGP RKKFQWSDEI RELLCQVVKI KLESFDLEK- NKAQSWEDYV ENSTTRP00000005209/1-1124 EKGGRRIMGP RKKFQWNDEI RELLCQVVKI KLESYDLER- NKAQSWEDYV bmy_14659T0/1-1155 EKGGRRIMGP RKKFQWNDEI RELLCQVVKI KLESYDLER- NKAQSWEDYV BACU019029/1-1118 EKGGRRIMGP RKKFQWNDEI RELLCQVVKI KLESYDLER- NKAQSWEDYV 551 600 ENSP00000379894/1-1134 KGFLDAEVKP LWPKGWMQAR TLFKESRRGH GHLTSILAKK KVMAPSKIKV ENSBTAP00000002274/1-1134 KAFLDAEVKP LWPKGWMQAR TLFKESRRGH GHLTSILAKK KVMASCKMKV ENSTTRP00000005209/1-1124 KAFLDAEVKP LWPKGWMQAR TLFKESRRGH GHLTSILAKK KVMASSKMKM bmy_14659T0/1-1155 KAFLDAEVKP LWPKGWMQAR TLFKESRRGH GHLTSILAKK KVMASSKMKV BACU019029/1-1118 KAFLDAEVKP LWPKGWMQAR TLFKESRRGH GHLTSILAKK KVMASSKMKV 601 650 ENSP00000379894/1-1134 KESSTKPDKK VSVPSGQIGG PIALPSDHQT GGLSIGASSR ELPSQASGGL ENSBTAP00000002274/1-1134 KESSAKPDKK VSVSSGQTGS PLALPSEHLG GGLGVGAASR EPSSQASGSL ENSTTRP00000005209/1-1124 KESSTKPDKK VSVPSGQIGS PLALPSEHLG GGLSIGAANR ELSSQASGSL bmy_14659T0/1-1155 KESSTKPDKK VSVPSGQIGS PLALPSEHLG GGLSIGAANR ELSSQASGSL BACU019029/1-1118 KESLTKPDKK VSVPSGQIGS PLALPSEHLG GGLSIGAANR ELSSQASGSL 651 700 ENSP00000379894/1-1134 ANPPPVNLED SLDEDLIRNP ASSVEAVSKE LAALNSRAAG NSEFTLPAPS ENSBTAP00000002274/1-1134 AHPAPINLED SLDGDLVHNS ASSLEAVSKE LAVLHSRAGG SSEFPLPTPV ENSTTRP00000005209/1-1124 ANPAPINVED SLDGDLIRNS ASSLEAVSKE LAALNSRASG SSEFTLPAPS bmy_14659T0/1-1155 ANPAPINVED SLDGDLIRNS ASSLEAVSKE LAALNSRASG SSEFTLPAPS BACU019029/1-1118 ANPAPINVED SLDGDLIRNS ASSLEAVSKE LAVLNSRASG SSEFTLPAPS 701 750 ENSP00000379894/1-1134 KAPAEKVGGV LCTEEKRNFA KPSP-SAPPP ASSLQSPLNF LAEQALALGQ ENSBTAP00000002274/1-1134 KVPAEKLAGV LCPEEKRNFP KPSPSSAPPP SSSLQSPLNF LAEQALALGQ ENSTTRP00000005209/1-1124 KVPAEKVTGV LCTEEKRNFP KPNPSSAPPP SSSLQSPLNF LAEQALALGQ bmy_14659T0/1-1155 KVPAEKVAGV LCTEEKRNFP KPSPSSAPPP SSSLQSPLNF LAEQALALGQ BACU019029/1-1118 KVPAEKVAGV LCTEEKRNFP KPSPSSAPPP SSSLQSPLNF LAEQALALGQ 751 800 ENSP00000379894/1-1134 SSQEKKPESS GYKELSCQAP LNKGLPEVHQ SKAKHHSLPR TSHGPQVAVP ENSBTAP00000002274/1-1134 SSQEKKTESS GYKELSCQAA LGKGPPEGQQ PKAKHHGLPR TSHVPPAGTA ENSTTRP00000005209/1-1124 SSQEKKPESS GYKELSCQAT LSKGLPEVQQ SKAKHHSLPR TSHAPQAGAP bmy_14659T0/1-1155 SSQEKKPESS GYKELSCQAT LSKGLPEVQQ SKAKHHSLPR TSHAPQAGAP BACU019029/1-1118 SSQEKKPESS GYKELSCQAT LSKGLPEVQQ SKAKHHSLPR TSHAPQAGAP 801 850 ENSP00000379894/1-1134 VPGPQVKVFH AGTQQQKNFT PPSPFANKLQ GPKASPTQCH RSLLQLVKTA ENSBTAP00000002274/1-1134 VPDPQVKVFH AGTQPQKSFT PPAPFVNKLQ GPKPGSPQCH RSLLQLVKTA ENSTTRP00000005209/1-1124 VSSPQVKVFH AGTQQQRGFT PPSS-VSKL- GSKAASIK-H RS-LQAVRTV bmy_14659T0/1-1155 VPSPQVKVFH AGAQQQKSFT PPAPFVNKLQ GPKPASPQCH RSLLQLVKTA BACU019029/1-1118 VPSPQVKVFH AGTQQQKSFT PPAPFVNKLQ GPKPASPQCH RSLLQLVKTA 851 900 ENSP00000379894/1-1134 AKGQGFHPSA PATSGGLSAS SSSSHKTPAS SSSALSHPAK PHSVSSAGSS ENSBTAP00000002274/1-1134 TKSQSFHASM PASSG-TPAS SSSSHKTPAS CSAAVSHPAK PHSASSSGPP ENSTTRP00000005209/1-1124 -KSQSFH-YT PVFRG---TP SSSSFHKPAS SSTALSHPAK QHSASSSGPS bmy_14659T0/1-1155 TKSQSFHPST PVSSGGTPAS SSSSHKTPAS SSTALSHPAK QHSASSSGPS BACU019029/1-1118 TKSQSFHPST PVSSGGTPAS SSSSHKTPAS SSTALSHPAK QHSASSSGPS 901 950 ENSP00000379894/1-1134 YKNNPFASSI SKHGVSSGSS SSGGTPVQSS VSGSLVPGIQ PPSVGQATSR ENSBTAP00000002274/1-1134 YKTSPFLGSA SKHGVSSGSP SSGGTPVQSP ASGNLLPTTQ PPSTGQSTSR ENSTTRP00000005209/1-1124 YKNSAFAGSI YKHGVSSGSS SSGGAPVQSS ASGNL-PAVQ PPSTGQSASR bmy_14659T0/1-1155 YKNSPFAGSI SKHGVSSGSS SSGGAPVQSS ASGSLLPAVQ PPSTGQSASR BACU019029/1-1118 YKNSPFAGSI SKHGVSSGSS SSGGAPVQSS ASGSLLPAVQ PPSTGQSASR 951 1000 ENSP00000379894/1-1134 PVPSSAGKKM PVSQKLTLVA PPGGPNGDSS GGTQGVAKLL TSPSLKPSAV ENSBTAP00000002274/1-1134 PVPGPAVKKP PVPQKLTLVA PPGGPNGDSS GGTQGVAKLL TS-SLKPSAV ENSTTRP00000005209/1-1124 PIPGSAVKKP PISQKLTLVA PPGGPNGDSS GGTQGVAKLL TS-SLKPSAV bmy_14659T0/1-1155 PIPGSAVKKP PISQKLTLVA PPGGPNGDSS GGTQGVAKLL TS-SLKPSAV BACU019029/1-1118 PIPGSAVKKP PISQKLTLVA PPGGPNGDSS GGTQGVAKLL TS-SLKPSAV 1001 1050 ENSP00000379894/1-1134 SSVTSSTSLS ---------- ---------- ---------- --KGASGTVL ENSBTAP00000002274/1-1134 SSVTSSTSLP ---------- ---------- ---------- --KGASGAVL ENSTTRP00000005209/1-1124 SSVTSSTSLP ---------- ---------- ---------- --KGTSGAVL bmy_14659T0/1-1155 SSVTSSTSLP VSILKQPSPR GPCGQGRWPC SGQRARSDAE GQKGTSGAVL BACU019029/1-1118 SSVTSSTSLP ---------- ---------- ---------- --KGTSGAVL 1051 1100 ENSP00000379894/1-1134 LAGSS---LM ASPYKSSSPK LSGAMSSNSL GIITPVPIPV HVLSFSADSS ENSBTAP00000002274/1-1134 LTGSSSLNLL SSSYKAGSPK LPGALNSSPL GIISQL--PL HVISFSADSS ENSTTRP00000005209/1-1124 LTSSSPLNLL SSSYKAGSPK LPGALNSNPL GIISQL--PL HVISFSADSS bmy_14659T0/1-1155 LTSSSPLNLL SSSYKAGSPK LPGALNSNPL GIISQL--PL HVISFSADSS BACU019029/1-1118 LTSSSPLNLL SSSYKAGSPK LPGALNSNPL GIISQL--PL HVISFSADSS 1101 1150 ENSP00000379894/1-1134 AKAGVSKDAI VTGPAPGSFH HGLGHSLLAG LHSSPPHAAP LPHAAVPTHI ENSBTAP00000002274/1-1134 AKAGVSKDAI VTGPAPGTFH HGLGHSLLAG VHSSPPRAAP LPHTAVSTHL ENSTTRP00000005209/1-1124 AKAGVSKDAI VTGPAPGTFH HGLGHSLLAG LHSSPPRGAP LPHAAVSTHI bmy_14659T0/1-1155 AKAGVSKDAI VTGPAPGTFH HGLGHSLLAG LHSSPPRAAP LPHAAVSTHI BACU019029/1-1118 AKAGVSKDAI VTGPAPGTFH HGLGHSLLAG LHSSPPRAAP LPHAAVSTHI 1151 1200 ENSP00000379894/1-1134 PQSLPGASQL HGKGPAVPRK L ENSBTAP00000002274/1-1134 PQSLPDASQL HGKGPSVPRK L ENSTTRP00000005209/1-1124 PQSLPDASQL HGKGPSVPRK L bmy_14659T0/1-1155 PQSLPDASQL HGKGPSVPRK L BACU019029/1-1118 PQSLP----- ---------- -