KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:09 2014 Check: 00 .. Name: ENSTTRP00000004003/1-1481 Len: 1549 Check: 3120 Weight: 1.00 Name: ENSP00000365130/1-1495 Len: 1549 Check: 8137 Weight: 1.00 Name: ENSBTAP00000002277/1-1498 Len: 1549 Check: 7275 Weight: 1.00 Name: bmy_12565T0/1-1465 Len: 1549 Check: 2983 Weight: 1.00 Name: BACU006698/1-1546 Len: 1549 Check: 3682 Weight: 1.00 // 1 50 ENSTTRP00000004003/1-1481 -------YFV RRAKERGTTD DEDFRRGHPQ QDYLIMDDYA KGHSSKMEKG ENSP00000365130/1-1495 MGDTAKPYFV KRTKDRGTMD DDDFRRGHPQ QDYLIIDDHA KGHGSKMEKG ENSBTAP00000002277/1-1498 MGDATKPYFV RRPKERGTTD DDDFRRGHPQ QDYLIMDDYA KGHSSKMEKG bmy_12565T0/1-1465 MGDAAKPYFV RRAKERGTTD DEDFRRGHPQ QDYLIMDDYA KGHSIKMEKG BACU006698/1-1546 MGDAAKPYFV RRAKERGTTD DEDFRRGHPQ QDYLIMDDYA KGHSSKMEKG 51 100 ENSTTRP00000004003/1-1481 LQKKKGTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPAWI NDNHKDQSKR ENSP00000365130/1-1495 LQKKKITPGN YGNTPRKGPC AVSSNPYAFK NPIYSQPAWM NDSHKDQSKR ENSBTAP00000002277/1-1498 LPKKKVTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPTWI NDNHRDQSKR bmy_12565T0/1-1465 LPKKRGTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPAWI NDNHKDQSKR BACU006698/1-1546 LPKKRGTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPAWI NDNHKDQSKR 101 150 ENSTTRP00000004003/1-1481 WLSDELAGNS DSWREFKPGP RIPVTNRPRR DSFQESEGGY RWQDGRGCRT ENSP00000365130/1-1495 WLSDEHTGNS DNWREFKPGP RIPVINRQRK DSFQENEDGY RWQDTRGCRT ENSBTAP00000002277/1-1498 WLSDELANNS DSWREYKPGP RIPVINRPRR DSFQESEDGY RWQDGRGCRT bmy_12565T0/1-1465 WLSDELAGNS DSWREFKPGP RIPVTNRPRK DSFQESEDGY RWQDGRGCRT BACU006698/1-1546 WLSDELAGNS DSWREFKPGP RIPVTNRPRK DSFQESEDGY RWQDGRGCRT 151 200 ENSTTRP00000004003/1-1481 VRRLFHKDLT SLETMSEMEA GSPENKKQRS RPRKPRRTRN EENEQDGDLE ENSP00000365130/1-1495 VRRLFHKDLT SLETTSEMEA GSPENKKQRS RPRKPRKTRN EENEQDGDLE ENSBTAP00000002277/1-1498 VRRLFHKELT NLDTMSEMEA GSPENKKPRS RPRKPRRTRN DENEQDGDLE bmy_12565T0/1-1465 VRRLFHKDLT SLETMSEVET GSPENKKQRS RPRKPRRTRN EENEQDGDLE BACU006698/1-1546 VRRLFHKDLT SLETMSEMEA GSPENKKQRS RPRKPRRTRN EENEQDGDLE 201 250 ENSTTRP00000004003/1-1481 GPVIDESVLS TKELLGLQQA EERLKRDCID RLKRRPRNYP TAKYTCKLCD ENSP00000365130/1-1495 GPVIDESVLS TKELLGLQQA EERLKRDCID RLKRRPRNYP TAKYTCRLCD ENSBTAP00000002277/1-1498 GPVIDESVLS TKELLGLQQA EERLKRDCID RLKRRPRNYP TAKYTCKLCA bmy_12565T0/1-1465 GPVIDESVLS TKELLGLQQA EERLRRDCVD RLQRRPRNYP TAKYTCKLCD BACU006698/1-1546 GPVIDESVLS TKELLGLQQA EERLRRDCVD RLQRRPRNYP TAKYTCKLCD 251 300 ENSTTRP00000004003/1-1481 VLIESIAFAH KHIKEKRHKK NIKXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000365130/1-1495 VLIESIAFAH KHIKEKRHKK NIKEKQEEEL LTTLPPPTPS QINAVGIAID ENSBTAP00000002277/1-1498 VLIESIAFAH KHIKEKRHKK NIKEKHEEEL LTTLPPPTPS QINAIGIAID bmy_12565T0/1-1465 VLIESIAFAH KHIKEKRHKK NIKEKQEEEL LTTLPPPTPS QINAIGIAID BACU006698/1-1546 VLIESIAFAH KHIKEKRHKK NIKEKQEEEL LTTLPPPTPS QINAIGIAID 301 350 ENSTTRP00000004003/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCSLRLYG SSCSRLGFKN ENSP00000365130/1-1495 KVVQEFGLHN ENLEQRLEIK RIMENVFQHK LPDCSLRLYG SSCSRLGFKN ENSBTAP00000002277/1-1498 KVVQEFGLHN ENLEQRLEIK RIMENVFQHK LPDCSLRLYG SSCSRLGFKN bmy_12565T0/1-1465 RVVQEFGLHN ENLEQRLEIK RIMENVFQHK LPDCSLRLYG SSCSRLGFKN BACU006698/1-1546 RVVQEFGLHN ENLEQRLEVK RIMESVFQHK LPDCSLRLYG SSCSRLGFKN 351 400 ENSTTRP00000004003/1-1481 SDINIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE ENSP00000365130/1-1495 SDVNIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE ENSBTAP00000002277/1-1498 SDINIDIQFP AIMSQPDVLL LVQECLKNND SFIDVDADFH ARVPVVVCRE bmy_12565T0/1-1465 SDINIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE BACU006698/1-1546 SDINIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE 401 450 ENSTTRP00000004003/1-1481 KQSGLLCXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLCSID ENSP00000365130/1-1495 KQSGLLCKVS AGNENACLTT KHLTALGKLE PKLVPLVIAF RYWAKLCSID ENSBTAP00000002277/1-1498 KQSGLLCKVS AGNENACLTT NHLTALGKLE SKLVPLVIAF RYWAKLCSID bmy_12565T0/1-1465 KQSGLLCKVS AGNENACLTT NHLTALGKLE SKLVPLVIAF RYWAKLCSID BACU006698/1-1546 KQSGLLCKVS AGNENACLTT NHLTALGKLE SKLVPLVIAF RYWAKLCSID 451 500 ENSTTRP00000004003/1-1481 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWXXXXX XXXXXXXXXX ENSP00000365130/1-1495 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LSKLGNFNLQ ENSBTAP00000002277/1-1498 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LNKLGNFNLK bmy_12565T0/1-1465 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LNKLGNFNLK BACU006698/1-1546 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LNKLGNFNLK 501 550 ENSTTRP00000004003/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVS-I FDLKHQPSVP ENSP00000365130/1-1495 DIEKDVVIWE HTDSAAGDTG ITKEEAPRET PIKRGQVSLI LDVKHQPSVP ENSBTAP00000002277/1-1498 EIEKDSVVWE YTDNVAGDVD STKEEAPKEM AIKRGQVPLI FDSKQQPSVP bmy_12565T0/1-1465 EIQKDSVVWE YTDNAAGDAD SAKEEAPKEM PVKRGQVSLI FDLKHQPSVP BACU006698/1-1546 EIQKDSVVWE YTDNAAGDAA SAKEEAPKEM PFKRGQVSLI FDLKHQPSVP 551 600 ENSTTRP00000004003/1-1481 VGQLWVELLR FYALEFNLAD LVISIRVKES VSRESKDWPK KRIAIEDPYS ENSP00000365130/1-1495 VGQLWVELLR FYALEFNLAD LVISIRVKEL VSRELKDWPK KRIAIEDPYS ENSBTAP00000002277/1-1498 IGQLWVELLR FYALEFNLAD LVISIRVKES ISRESKDWPK KRIAIEDPYS bmy_12565T0/1-1465 VGQLWVELLR FYALEFNLAD LVISIRVKES VSRESKDWPK KRVAIEDPYS BACU006698/1-1546 VGQLWVELLR FYALEFNLAD LVISIRVKES VSRESKDWPK KRIAIEDPYS 601 650 ENSTTRP00000004003/1-1481 VKRNVARTIN NQPV-EYIIQ SLRTTSKYNA LPHKNTKSSL PKPESSAACI ENSP00000365130/1-1495 VKRNVARTLN SQPVFEYILH CLRTTYKYFA LPHKITKSSL LKPLNAITCI ENSBTAP00000002277/1-1498 IKRNVARTLN NQPVFEYILH CLRTTYKYFA LPHKVMKSSL PKPLSTVSCT bmy_12565T0/1-1465 VKRNVARTLN NQPVFEYILH CLRTTYKYFA LPHKITKSSL PKPLSTDTCT BACU006698/1-1546 VKRNVARTLN NQPVFEYILH CLRTTYKYFA LPHKVTKSSL PKPLSTDTCT 651 700 ENSTTRP00000004003/1-1481 SNHCKEVAKR DADVQEKDD- --NSXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000365130/1-1495 SEHSKEVINH HPDVQTKDDK LKNSVLAQGP GATSSAANTC KVQPLTLKET ENSBTAP00000002277/1-1498 SERSKEIAKH DPEVQAKGDK LKNSVLAQGS GAASSTANTC KAQPLTLKET bmy_12565T0/1-1465 SKHSKEVAKR DPDVQAEGDK LKTSVLAQGP GAASLTASTC KVQSLTLKET BACU006698/1-1546 SKHSKEVAKR DPDVQAEGDK LKTSVLAQGP GAASLTASTC KVQSLTLKET 701 750 ENSTTRP00000004003/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXQETGSKD ENSP00000365130/1-1495 AESFGSPPKE EMGNEHISVH PENSDCIQAD VNSDDYKGDK VYHPETGRKN ENSBTAP00000002277/1-1498 DENFESPSAE KMGNSHISVH LENSDCIKAK VSSGDSKDIE VHHQETGSKN bmy_12565T0/1-1465 AESFESPSTQ EMGNTHVSVH LENSDCIKAE VTCDDSEHVK VHHQETGSKD BACU006698/1-1546 AESFESPSTG EMGNTHVSVH LENSDCIKAE VTCDDSEHVK VHHQETGSKD 751 800 ENSTTRP00000004003/1-1481 EKEKCGMEGK HPLTADDKR- -----GELVV CGSPGSDETH GTLHLKGFEN ENSP00000365130/1-1495 EKEKVGRKGK HLLTVDQKR- -----GEHVV CGSTRNNESE STLDLEGFQN ENSBTAP00000002277/1-1498 KKEKNGKESK HPLTADDQAL SSSKCGALVT CGSSGTKETD TTLDLEGFRN bmy_12565T0/1-1465 EKEKCGLEGK HALTAGDQAL SSSRCGELVI CGRPGNNETD GTLDLKGFEN BACU006698/1-1546 EKEKCGLEGK HPLTAGDQAL SSSRCGELVI CGRPGNNETD GTLDLKGFEN 801 850 ENSTTRP00000004003/1-1481 PTAKGCDEFA TLDDKADVDE ESIEGTDELG DALSHFTPSR QGQTSGIIHS ENSP00000365130/1-1495 PTAKECEGLA TLDNKADLDG ESTEGTEELE DSLNHFTHSV QGQTSEMIPS ENSBTAP00000002277/1-1498 PIATEYDEFP PSYAKADVDE ESIEGTNELG DAVSHFTPLR QSQISGILHS bmy_12565T0/1-1465 PTAKESDEFA TVDDKADVDE ESIEGTDELG DALSHFTPSR QGQTSGVIHS BACU006698/1-1546 PTAKESDEFA IVADKADVDE ESIEGTDELG DALSHFTPSR KGQTLGVIHS 851 900 ENSTTRP00000004003/1-1481 DEEEE--EEE EEEEEPRLSI SRREDEDDVA NEDELDNTYT GSGDEDALSE ENSP00000365130/1-1495 DEEEEDDEEE EEEEEPRLTI NQREDEDGMA NEDELDNTYT GSGDEDALSE ENSBTAP00000002277/1-1498 DEEE---EDE EEEEEPRLSI SRREDEDDIA NGDELDNTFT GSGDEDALSE bmy_12565T0/1-1465 DEEEE--EEE EEEEEPRLSI SRREDKGDVA NEDELDNTYT GSGDEDALSE BACU006698/1-1546 DEEEE--EEE EEEEEPRLSI SRREDEGDVA NEDELDNTYT GSGDEDALSE 901 950 ENSTTRP00000004003/1-1481 EDEELGGSAK YEDLKECGKH QVDGNLLMEL NKISLKEENV CEE-NSTADQ ENSP00000365130/1-1495 EDDELGEAAK YEDVKECGKH -VERALLVEL NKISLKEENV CEEKNSPVDQ ENSBTAP00000002277/1-1498 EDVELDGSAK YEDLKECGKH HVDGNLLTEL NKISLKEESV CEE-NSTVNQ bmy_12565T0/1-1465 EDEEFGGSAK REDLKECGKH QVDGNLLMEL NKISLKEENV CEE-NSTADH BACU006698/1-1546 EDEEFGGSAK REDLKECGKH QVDGNLLMEL NKISLKEENV CEE-NSTADH 951 1000 ENSTTRP00000004003/1-1481 SDFFYEFSKL IFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL ENSP00000365130/1-1495 SDFFYEFSKL IFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL ENSBTAP00000002277/1-1498 SDFFYEFSKL TFTRGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL bmy_12565T0/1-1465 SDFFYEFSKL TFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL BACU006698/1-1546 SDFFYEFSKL TFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL 1001 1050 ENSTTRP00000004003/1-1481 TPKFSNILDQ VCIQCYKDFS PTILEDQARE HIRQNLESFI RQEFPGTKLS ENSP00000365130/1-1495 TPKFLNILDQ VCIQCYKDFS PTIIEDQARE HIRQNLESFI RQDFPGTKLS ENSBTAP00000002277/1-1498 TPKFSNILDQ VCIQCYKDFS PTVLEDQARE HIRQNLENFI RQEFPGTKLS bmy_12565T0/1-1465 TPKFSNILDQ VCIQCYKDFS PTILEDQARE HIRQNLESFI RQEFPGTKLS BACU006698/1-1546 TPKFSNILDQ VCIQCYKDFS PTILEDQARE HIRQNLESFI RQEFPGTKLS 1051 1100 ENSTTRP00000004003/1-1481 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLKKHSGL ENSP00000365130/1-1495 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLRKHSGL ENSBTAP00000002277/1-1498 LFGSSKNGFG FKQSDLDVCM TINGLETAEE LDCVRTIEEL ARVLKKHSGL bmy_12565T0/1-1465 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLKKHSGL BACU006698/1-1546 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLKKHSGL 1101 1150 ENSTTRP00000004003/1-1481 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR ENSP00000365130/1-1495 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR ENSBTAP00000002277/1-1498 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR bmy_12565T0/1-1465 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR BACU006698/1-1546 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR 1151 1200 ENSTTRP00000004003/1-1481 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ ENSP00000365130/1-1495 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ ENSBTAP00000002277/1-1498 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ bmy_12565T0/1-1465 VKYLCYTMKV FTK------- ---------- ---------- -----VSMLP BACU006698/1-1546 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ 1201 1250 ENSTTRP00000004003/1-1481 EIYKGEKKPE IFVDGWNIYF FDQIDELPTY WPEYGKNTES VGQLWLGLLR ENSP00000365130/1-1495 EIYKGEKKPE IFVDGWNIYF FDQIDELPTY WSECGKNTES VGQLWLGLLR ENSBTAP00000002277/1-1498 EIYKGEKKPE IFVDGWNIYF FDQIDELPNY WPEYGKNTES VGQLWLGLLR bmy_12565T0/1-1465 LIYKGEKKPE IFVDGWNIYF FDQIDELPTY WPEYGKNTES VGQLWLGLLR BACU006698/1-1546 EIYKGEKKPE IFVDGWNIYF FDQIDELPTY WPEYGKNTES VGQLWLGLLR 1251 1300 ENSTTRP00000004003/1-1481 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS ENSP00000365130/1-1495 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS ENSBTAP00000002277/1-1498 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS bmy_12565T0/1-1465 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS BACU006698/1-1546 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS 1301 1350 ENSTTRP00000004003/1-1481 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN ENSP00000365130/1-1495 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN ENSBTAP00000002277/1-1498 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN bmy_12565T0/1-1465 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN BACU006698/1-1546 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN 1351 1400 ENSTTRP00000004003/1-1481 DRCCRICGKI GHFMKDCPMR RRVRRRRDQE DTLNQRYPEN KEKRSKEDKE ENSP00000365130/1-1495 DRCCRICGKI GHFMKDCPMR RKVRRRRDQE DALNQRYPEN KEKRSKEDKE ENSBTAP00000002277/1-1498 DRCCRICGKI GHFMKDCPMR RKVRRRRDQE DTLNQRYPEN KDKRSKEDKE bmy_12565T0/1-1465 DRCCRICGKI GHFMKDCPMR RRVRRRRDQE DTLNQRYPEN KEKRSKEDKE BACU006698/1-1546 DRCCRICGKI GHFMKDCPMR RRVRRRRDQE DTLNQRYPEN KEKRSKEDKE 1401 1450 ENSTTRP00000004003/1-1481 IQNKYTEREV STKEDKPMQC TLQKAKPVRA AVDLGREKIL RPPVEKWKRQ ENSP00000365130/1-1495 IHNKYTEREV STKEDKPIQC TPQKAKPMRA AADLGREKIL RPPVEKWKRQ ENSBTAP00000002277/1-1498 IQNKYTEREV STKEDKPMQC TPQKAKPLRA AAEPGREKIL RPPVEKWKRQ bmy_12565T0/1-1465 IQNKYTEREV STKEDKPMQC TLQKAKPVRA AVDLGREKIL RPPVEKWKRQ BACU006698/1-1546 IQNKYTEREV STKEDKPMQC TLQKAKPVRA AVDLGREKIL RPPVEKWKRQ 1451 1500 ENSTTRP00000004003/1-1481 DDKDLREKRC FICGREGHIK KECPQFKGSS G--------- ---------- ENSP00000365130/1-1495 DDKDLREKRC FICGREGHIK KECPQFKGSS G--------- ---------- ENSBTAP00000002277/1-1498 EDRDLREKRC FICGREGHIK KECPQFKGSS G--------- ---------- bmy_12565T0/1-1465 DDKDLREKRC FICGREGHIK KECPQFKGTS GMHTHH---- ---------- BACU006698/1-1546 DDKDLREKRC FICGREGHIK KECPQFKGTS GLSKSDCVFG SPSSPSPLRP 1501 1550 ENSTTRP00000004003/1-1481 ---------- ---------- --------SL SSKYMTQGKA SAKRTQQES ENSP00000365130/1-1495 ---------- ---------- --------SL SSKYMTQGKA SAKRTQQES ENSBTAP00000002277/1-1498 ---------- ---------- --------SL SSKYMTQGKA SAKRTQQES bmy_12565T0/1-1465 ---------- ---------- --------TL MFALTSQGKS LF------- BACU006698/1-1546 TGAFVQAVLL HEDQKKQKTS IFLSPQSGSL SSKYMTQGKA SAKRTQQES