KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:17:09 2014 Check: 00 ..
Name: ENSTTRP00000004003/1-1481 Len: 1549 Check: 3120 Weight: 1.00
Name: ENSP00000365130/1-1495 Len: 1549 Check: 8137 Weight: 1.00
Name: ENSBTAP00000002277/1-1498 Len: 1549 Check: 7275 Weight: 1.00
Name: bmy_12565T0/1-1465 Len: 1549 Check: 2983 Weight: 1.00
Name: BACU006698/1-1546 Len: 1549 Check: 3682 Weight: 1.00
//
1 50
ENSTTRP00000004003/1-1481 -------YFV RRAKERGTTD DEDFRRGHPQ QDYLIMDDYA KGHSSKMEKG
ENSP00000365130/1-1495 MGDTAKPYFV KRTKDRGTMD DDDFRRGHPQ QDYLIIDDHA KGHGSKMEKG
ENSBTAP00000002277/1-1498 MGDATKPYFV RRPKERGTTD DDDFRRGHPQ QDYLIMDDYA KGHSSKMEKG
bmy_12565T0/1-1465 MGDAAKPYFV RRAKERGTTD DEDFRRGHPQ QDYLIMDDYA KGHSIKMEKG
BACU006698/1-1546 MGDAAKPYFV RRAKERGTTD DEDFRRGHPQ QDYLIMDDYA KGHSSKMEKG
51 100
ENSTTRP00000004003/1-1481 LQKKKGTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPAWI NDNHKDQSKR
ENSP00000365130/1-1495 LQKKKITPGN YGNTPRKGPC AVSSNPYAFK NPIYSQPAWM NDSHKDQSKR
ENSBTAP00000002277/1-1498 LPKKKVTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPTWI NDNHRDQSKR
bmy_12565T0/1-1465 LPKKRGTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPAWI NDNHKDQSKR
BACU006698/1-1546 LPKKRGTPGN YGNTPRKGPY AVSSNPYAFK NPIYSQPAWI NDNHKDQSKR
101 150
ENSTTRP00000004003/1-1481 WLSDELAGNS DSWREFKPGP RIPVTNRPRR DSFQESEGGY RWQDGRGCRT
ENSP00000365130/1-1495 WLSDEHTGNS DNWREFKPGP RIPVINRQRK DSFQENEDGY RWQDTRGCRT
ENSBTAP00000002277/1-1498 WLSDELANNS DSWREYKPGP RIPVINRPRR DSFQESEDGY RWQDGRGCRT
bmy_12565T0/1-1465 WLSDELAGNS DSWREFKPGP RIPVTNRPRK DSFQESEDGY RWQDGRGCRT
BACU006698/1-1546 WLSDELAGNS DSWREFKPGP RIPVTNRPRK DSFQESEDGY RWQDGRGCRT
151 200
ENSTTRP00000004003/1-1481 VRRLFHKDLT SLETMSEMEA GSPENKKQRS RPRKPRRTRN EENEQDGDLE
ENSP00000365130/1-1495 VRRLFHKDLT SLETTSEMEA GSPENKKQRS RPRKPRKTRN EENEQDGDLE
ENSBTAP00000002277/1-1498 VRRLFHKELT NLDTMSEMEA GSPENKKPRS RPRKPRRTRN DENEQDGDLE
bmy_12565T0/1-1465 VRRLFHKDLT SLETMSEVET GSPENKKQRS RPRKPRRTRN EENEQDGDLE
BACU006698/1-1546 VRRLFHKDLT SLETMSEMEA GSPENKKQRS RPRKPRRTRN EENEQDGDLE
201 250
ENSTTRP00000004003/1-1481 GPVIDESVLS TKELLGLQQA EERLKRDCID RLKRRPRNYP TAKYTCKLCD
ENSP00000365130/1-1495 GPVIDESVLS TKELLGLQQA EERLKRDCID RLKRRPRNYP TAKYTCRLCD
ENSBTAP00000002277/1-1498 GPVIDESVLS TKELLGLQQA EERLKRDCID RLKRRPRNYP TAKYTCKLCA
bmy_12565T0/1-1465 GPVIDESVLS TKELLGLQQA EERLRRDCVD RLQRRPRNYP TAKYTCKLCD
BACU006698/1-1546 GPVIDESVLS TKELLGLQQA EERLRRDCVD RLQRRPRNYP TAKYTCKLCD
251 300
ENSTTRP00000004003/1-1481 VLIESIAFAH KHIKEKRHKK NIKXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000365130/1-1495 VLIESIAFAH KHIKEKRHKK NIKEKQEEEL LTTLPPPTPS QINAVGIAID
ENSBTAP00000002277/1-1498 VLIESIAFAH KHIKEKRHKK NIKEKHEEEL LTTLPPPTPS QINAIGIAID
bmy_12565T0/1-1465 VLIESIAFAH KHIKEKRHKK NIKEKQEEEL LTTLPPPTPS QINAIGIAID
BACU006698/1-1546 VLIESIAFAH KHIKEKRHKK NIKEKQEEEL LTTLPPPTPS QINAIGIAID
301 350
ENSTTRP00000004003/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCSLRLYG SSCSRLGFKN
ENSP00000365130/1-1495 KVVQEFGLHN ENLEQRLEIK RIMENVFQHK LPDCSLRLYG SSCSRLGFKN
ENSBTAP00000002277/1-1498 KVVQEFGLHN ENLEQRLEIK RIMENVFQHK LPDCSLRLYG SSCSRLGFKN
bmy_12565T0/1-1465 RVVQEFGLHN ENLEQRLEIK RIMENVFQHK LPDCSLRLYG SSCSRLGFKN
BACU006698/1-1546 RVVQEFGLHN ENLEQRLEVK RIMESVFQHK LPDCSLRLYG SSCSRLGFKN
351 400
ENSTTRP00000004003/1-1481 SDINIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE
ENSP00000365130/1-1495 SDVNIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE
ENSBTAP00000002277/1-1498 SDINIDIQFP AIMSQPDVLL LVQECLKNND SFIDVDADFH ARVPVVVCRE
bmy_12565T0/1-1465 SDINIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE
BACU006698/1-1546 SDINIDIQFP AIMSQPDVLL LVQECLKNSD SFIDVDADFH ARVPVVVCRE
401 450
ENSTTRP00000004003/1-1481 KQSGLLCXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLCSID
ENSP00000365130/1-1495 KQSGLLCKVS AGNENACLTT KHLTALGKLE PKLVPLVIAF RYWAKLCSID
ENSBTAP00000002277/1-1498 KQSGLLCKVS AGNENACLTT NHLTALGKLE SKLVPLVIAF RYWAKLCSID
bmy_12565T0/1-1465 KQSGLLCKVS AGNENACLTT NHLTALGKLE SKLVPLVIAF RYWAKLCSID
BACU006698/1-1546 KQSGLLCKVS AGNENACLTT NHLTALGKLE SKLVPLVIAF RYWAKLCSID
451 500
ENSTTRP00000004003/1-1481 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWXXXXX XXXXXXXXXX
ENSP00000365130/1-1495 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LSKLGNFNLQ
ENSBTAP00000002277/1-1498 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LNKLGNFNLK
bmy_12565T0/1-1465 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LNKLGNFNLK
BACU006698/1-1546 RPEEGGLPPY VFALMAIFFL QQRKEPLLPV YLGSWIEGFS LNKLGNFNLK
501 550
ENSTTRP00000004003/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVS-I FDLKHQPSVP
ENSP00000365130/1-1495 DIEKDVVIWE HTDSAAGDTG ITKEEAPRET PIKRGQVSLI LDVKHQPSVP
ENSBTAP00000002277/1-1498 EIEKDSVVWE YTDNVAGDVD STKEEAPKEM AIKRGQVPLI FDSKQQPSVP
bmy_12565T0/1-1465 EIQKDSVVWE YTDNAAGDAD SAKEEAPKEM PVKRGQVSLI FDLKHQPSVP
BACU006698/1-1546 EIQKDSVVWE YTDNAAGDAA SAKEEAPKEM PFKRGQVSLI FDLKHQPSVP
551 600
ENSTTRP00000004003/1-1481 VGQLWVELLR FYALEFNLAD LVISIRVKES VSRESKDWPK KRIAIEDPYS
ENSP00000365130/1-1495 VGQLWVELLR FYALEFNLAD LVISIRVKEL VSRELKDWPK KRIAIEDPYS
ENSBTAP00000002277/1-1498 IGQLWVELLR FYALEFNLAD LVISIRVKES ISRESKDWPK KRIAIEDPYS
bmy_12565T0/1-1465 VGQLWVELLR FYALEFNLAD LVISIRVKES VSRESKDWPK KRVAIEDPYS
BACU006698/1-1546 VGQLWVELLR FYALEFNLAD LVISIRVKES VSRESKDWPK KRIAIEDPYS
601 650
ENSTTRP00000004003/1-1481 VKRNVARTIN NQPV-EYIIQ SLRTTSKYNA LPHKNTKSSL PKPESSAACI
ENSP00000365130/1-1495 VKRNVARTLN SQPVFEYILH CLRTTYKYFA LPHKITKSSL LKPLNAITCI
ENSBTAP00000002277/1-1498 IKRNVARTLN NQPVFEYILH CLRTTYKYFA LPHKVMKSSL PKPLSTVSCT
bmy_12565T0/1-1465 VKRNVARTLN NQPVFEYILH CLRTTYKYFA LPHKITKSSL PKPLSTDTCT
BACU006698/1-1546 VKRNVARTLN NQPVFEYILH CLRTTYKYFA LPHKVTKSSL PKPLSTDTCT
651 700
ENSTTRP00000004003/1-1481 SNHCKEVAKR DADVQEKDD- --NSXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000365130/1-1495 SEHSKEVINH HPDVQTKDDK LKNSVLAQGP GATSSAANTC KVQPLTLKET
ENSBTAP00000002277/1-1498 SERSKEIAKH DPEVQAKGDK LKNSVLAQGS GAASSTANTC KAQPLTLKET
bmy_12565T0/1-1465 SKHSKEVAKR DPDVQAEGDK LKTSVLAQGP GAASLTASTC KVQSLTLKET
BACU006698/1-1546 SKHSKEVAKR DPDVQAEGDK LKTSVLAQGP GAASLTASTC KVQSLTLKET
701 750
ENSTTRP00000004003/1-1481 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXQETGSKD
ENSP00000365130/1-1495 AESFGSPPKE EMGNEHISVH PENSDCIQAD VNSDDYKGDK VYHPETGRKN
ENSBTAP00000002277/1-1498 DENFESPSAE KMGNSHISVH LENSDCIKAK VSSGDSKDIE VHHQETGSKN
bmy_12565T0/1-1465 AESFESPSTQ EMGNTHVSVH LENSDCIKAE VTCDDSEHVK VHHQETGSKD
BACU006698/1-1546 AESFESPSTG EMGNTHVSVH LENSDCIKAE VTCDDSEHVK VHHQETGSKD
751 800
ENSTTRP00000004003/1-1481 EKEKCGMEGK HPLTADDKR- -----GELVV CGSPGSDETH GTLHLKGFEN
ENSP00000365130/1-1495 EKEKVGRKGK HLLTVDQKR- -----GEHVV CGSTRNNESE STLDLEGFQN
ENSBTAP00000002277/1-1498 KKEKNGKESK HPLTADDQAL SSSKCGALVT CGSSGTKETD TTLDLEGFRN
bmy_12565T0/1-1465 EKEKCGLEGK HALTAGDQAL SSSRCGELVI CGRPGNNETD GTLDLKGFEN
BACU006698/1-1546 EKEKCGLEGK HPLTAGDQAL SSSRCGELVI CGRPGNNETD GTLDLKGFEN
801 850
ENSTTRP00000004003/1-1481 PTAKGCDEFA TLDDKADVDE ESIEGTDELG DALSHFTPSR QGQTSGIIHS
ENSP00000365130/1-1495 PTAKECEGLA TLDNKADLDG ESTEGTEELE DSLNHFTHSV QGQTSEMIPS
ENSBTAP00000002277/1-1498 PIATEYDEFP PSYAKADVDE ESIEGTNELG DAVSHFTPLR QSQISGILHS
bmy_12565T0/1-1465 PTAKESDEFA TVDDKADVDE ESIEGTDELG DALSHFTPSR QGQTSGVIHS
BACU006698/1-1546 PTAKESDEFA IVADKADVDE ESIEGTDELG DALSHFTPSR KGQTLGVIHS
851 900
ENSTTRP00000004003/1-1481 DEEEE--EEE EEEEEPRLSI SRREDEDDVA NEDELDNTYT GSGDEDALSE
ENSP00000365130/1-1495 DEEEEDDEEE EEEEEPRLTI NQREDEDGMA NEDELDNTYT GSGDEDALSE
ENSBTAP00000002277/1-1498 DEEE---EDE EEEEEPRLSI SRREDEDDIA NGDELDNTFT GSGDEDALSE
bmy_12565T0/1-1465 DEEEE--EEE EEEEEPRLSI SRREDKGDVA NEDELDNTYT GSGDEDALSE
BACU006698/1-1546 DEEEE--EEE EEEEEPRLSI SRREDEGDVA NEDELDNTYT GSGDEDALSE
901 950
ENSTTRP00000004003/1-1481 EDEELGGSAK YEDLKECGKH QVDGNLLMEL NKISLKEENV CEE-NSTADQ
ENSP00000365130/1-1495 EDDELGEAAK YEDVKECGKH -VERALLVEL NKISLKEENV CEEKNSPVDQ
ENSBTAP00000002277/1-1498 EDVELDGSAK YEDLKECGKH HVDGNLLTEL NKISLKEESV CEE-NSTVNQ
bmy_12565T0/1-1465 EDEEFGGSAK REDLKECGKH QVDGNLLMEL NKISLKEENV CEE-NSTADH
BACU006698/1-1546 EDEEFGGSAK REDLKECGKH QVDGNLLMEL NKISLKEENV CEE-NSTADH
951 1000
ENSTTRP00000004003/1-1481 SDFFYEFSKL IFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL
ENSP00000365130/1-1495 SDFFYEFSKL IFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL
ENSBTAP00000002277/1-1498 SDFFYEFSKL TFTRGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL
bmy_12565T0/1-1465 SDFFYEFSKL TFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL
BACU006698/1-1546 SDFFYEFSKL TFTKGKSPTV VCSLCKREGH LKKDCPEDFK RIQLEPLPPL
1001 1050
ENSTTRP00000004003/1-1481 TPKFSNILDQ VCIQCYKDFS PTILEDQARE HIRQNLESFI RQEFPGTKLS
ENSP00000365130/1-1495 TPKFLNILDQ VCIQCYKDFS PTIIEDQARE HIRQNLESFI RQDFPGTKLS
ENSBTAP00000002277/1-1498 TPKFSNILDQ VCIQCYKDFS PTVLEDQARE HIRQNLENFI RQEFPGTKLS
bmy_12565T0/1-1465 TPKFSNILDQ VCIQCYKDFS PTILEDQARE HIRQNLESFI RQEFPGTKLS
BACU006698/1-1546 TPKFSNILDQ VCIQCYKDFS PTILEDQARE HIRQNLESFI RQEFPGTKLS
1051 1100
ENSTTRP00000004003/1-1481 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLKKHSGL
ENSP00000365130/1-1495 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLRKHSGL
ENSBTAP00000002277/1-1498 LFGSSKNGFG FKQSDLDVCM TINGLETAEE LDCVRTIEEL ARVLKKHSGL
bmy_12565T0/1-1465 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLKKHSGL
BACU006698/1-1546 LFGSSKNGFG FKQSDLDVCM TINGLETAEG LDCVRTIEEL ARVLKKHSGL
1101 1150
ENSTTRP00000004003/1-1481 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR
ENSP00000365130/1-1495 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR
ENSBTAP00000002277/1-1498 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR
bmy_12565T0/1-1465 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR
BACU006698/1-1546 RNILPITTAK VPIVKFFHLR SGLEVDISLY NTLALHNTRL LSAYSAIDPR
1151 1200
ENSTTRP00000004003/1-1481 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ
ENSP00000365130/1-1495 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ
ENSBTAP00000002277/1-1498 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ
bmy_12565T0/1-1465 VKYLCYTMKV FTK------- ---------- ---------- -----VSMLP
BACU006698/1-1546 VKYLCYTMKV FTKMCDIGDA SRGSLSSYAY TLMVLYFLQQ RNPPVIPVLQ
1201 1250
ENSTTRP00000004003/1-1481 EIYKGEKKPE IFVDGWNIYF FDQIDELPTY WPEYGKNTES VGQLWLGLLR
ENSP00000365130/1-1495 EIYKGEKKPE IFVDGWNIYF FDQIDELPTY WSECGKNTES VGQLWLGLLR
ENSBTAP00000002277/1-1498 EIYKGEKKPE IFVDGWNIYF FDQIDELPNY WPEYGKNTES VGQLWLGLLR
bmy_12565T0/1-1465 LIYKGEKKPE IFVDGWNIYF FDQIDELPTY WPEYGKNTES VGQLWLGLLR
BACU006698/1-1546 EIYKGEKKPE IFVDGWNIYF FDQIDELPTY WPEYGKNTES VGQLWLGLLR
1251 1300
ENSTTRP00000004003/1-1481 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS
ENSP00000365130/1-1495 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS
ENSBTAP00000002277/1-1498 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS
bmy_12565T0/1-1465 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS
BACU006698/1-1546 FYTEEFDFKE HVISIRRKSL LTTFKKQWTS KYIVIEDPFD LNHNLGAGLS
1301 1350
ENSTTRP00000004003/1-1481 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN
ENSP00000365130/1-1495 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN
ENSBTAP00000002277/1-1498 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN
bmy_12565T0/1-1465 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN
BACU006698/1-1546 RKMTNFIMKA FINGRRVFGI PVKGFPKDYP SKMEYFFDPD VLTEGELAPN
1351 1400
ENSTTRP00000004003/1-1481 DRCCRICGKI GHFMKDCPMR RRVRRRRDQE DTLNQRYPEN KEKRSKEDKE
ENSP00000365130/1-1495 DRCCRICGKI GHFMKDCPMR RKVRRRRDQE DALNQRYPEN KEKRSKEDKE
ENSBTAP00000002277/1-1498 DRCCRICGKI GHFMKDCPMR RKVRRRRDQE DTLNQRYPEN KDKRSKEDKE
bmy_12565T0/1-1465 DRCCRICGKI GHFMKDCPMR RRVRRRRDQE DTLNQRYPEN KEKRSKEDKE
BACU006698/1-1546 DRCCRICGKI GHFMKDCPMR RRVRRRRDQE DTLNQRYPEN KEKRSKEDKE
1401 1450
ENSTTRP00000004003/1-1481 IQNKYTEREV STKEDKPMQC TLQKAKPVRA AVDLGREKIL RPPVEKWKRQ
ENSP00000365130/1-1495 IHNKYTEREV STKEDKPIQC TPQKAKPMRA AADLGREKIL RPPVEKWKRQ
ENSBTAP00000002277/1-1498 IQNKYTEREV STKEDKPMQC TPQKAKPLRA AAEPGREKIL RPPVEKWKRQ
bmy_12565T0/1-1465 IQNKYTEREV STKEDKPMQC TLQKAKPVRA AVDLGREKIL RPPVEKWKRQ
BACU006698/1-1546 IQNKYTEREV STKEDKPMQC TLQKAKPVRA AVDLGREKIL RPPVEKWKRQ
1451 1500
ENSTTRP00000004003/1-1481 DDKDLREKRC FICGREGHIK KECPQFKGSS G--------- ----------
ENSP00000365130/1-1495 DDKDLREKRC FICGREGHIK KECPQFKGSS G--------- ----------
ENSBTAP00000002277/1-1498 EDRDLREKRC FICGREGHIK KECPQFKGSS G--------- ----------
bmy_12565T0/1-1465 DDKDLREKRC FICGREGHIK KECPQFKGTS GMHTHH---- ----------
BACU006698/1-1546 DDKDLREKRC FICGREGHIK KECPQFKGTS GLSKSDCVFG SPSSPSPLRP
1501 1550
ENSTTRP00000004003/1-1481 ---------- ---------- --------SL SSKYMTQGKA SAKRTQQES
ENSP00000365130/1-1495 ---------- ---------- --------SL SSKYMTQGKA SAKRTQQES
ENSBTAP00000002277/1-1498 ---------- ---------- --------SL SSKYMTQGKA SAKRTQQES
bmy_12565T0/1-1465 ---------- ---------- --------TL MFALTSQGKS LF-------
BACU006698/1-1546 TGAFVQAVLL HEDQKKQKTS IFLSPQSGSL SSKYMTQGKA SAKRTQQES