KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:10 2014 Check: 00 .. Name: ENSTTRP00000010905/1-989 Len: 994 Check: 4902 Weight: 1.00 Name: bmy_09279T0/1-558 Len: 994 Check: 7986 Weight: 1.00 Name: ENSP00000363023/1-989 Len: 994 Check: 505 Weight: 1.00 Name: BACU015522/1-453 Len: 994 Check: 6143 Weight: 1.00 Name: ENSBTAP00000002286/1-992 Len: 994 Check: 2122 Weight: 1.00 // 1 50 ENSTTRP00000010905/1-989 MKGLGDSRPR HLSDSLDPPH EPLFAGPDRN PYLLSPTEAF AREARFPGQN bmy_09279T0/1-558 MKGLGDSRPR HLSDSLDPPH EPLFAGPDRN PYLLSPTEAF AREARFPGQN ENSP00000363023/1-989 MKGLGDSRPR HLSDSLDPPH EPLFAGTDRN PYLLSPTEAF AREARFPGQN BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 MKGLGDSRPR HLSDSLDPPH EPLFAGPDRN PYLLSPTEAF AREARFPGQN 51 100 ENSTTRP00000010905/1-989 ALPGDGLFPL NNQLPPPSST FPRIHYNSHF EVPEESPFPS HAQATKINRL bmy_09279T0/1-558 ALPGDGLFPL NNQLPPPSST FPRIHYNSHF EVPEESPFPS HAQATKINRL ENSP00000363023/1-989 TLPGDGLFPL NNQLPPPSST FPRIHYNSHF EVPEESPFPS HAQATKINRL BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 ALPGDGLFPL NNQLPPPSST FPRIHYNSHF EVPEESPFPS HAQATKINRL 101 150 ENSTTRP00000010905/1-989 PANLLDQFEK QLPIHRDGFS TLQFPRGEAK ARGESPGRIR HLVHSVQRLF bmy_09279T0/1-558 PANLLDQFEK QLPIHRDGFS TLQFPRGEAK ARGESPGRIR HLVHSVQRLF ENSP00000363023/1-989 PANLLDQFEK QLPIHRDGFS TLQFPRGEAK ARGESPGRIR HLVHSVQRLF BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 PANLLDQFEK QLPIHRDGFS TLQFPRGEAK ARGESPGRIR HLVHSVQRLF 151 200 ENSTTRP00000010905/1-989 FTKAPSLEGT AGKVGGNGGK KGGLEDGKGR RAKSKERAKA GEPKRRSRSN bmy_09279T0/1-558 FTKAPSLEGT AGKVGGNGGK KGGLEDGKGR RAKSKERAKA GEPKRRSRSN ENSP00000363023/1-989 FTKAPSLEGT AGKVGGNGSK KGGMEDGKGR RAKSKERAKA GEPKRRSRSN BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 FTKAPSLEGT AGKVGGNGGK KGVLEDGKGR RAKSKERAKA GEPKRRSRSN 201 250 ENSTTRP00000010905/1-989 ISGWWSSDDN LDGEGGTFRS GGPASGLMTL GRQTERSQPR YFTHAYNTIS bmy_09279T0/1-558 ISGWWSSDDN LDGEGGAFRS GGPASGLMTL GRQAERSQPR YFTHAYNTIS ENSP00000363023/1-989 ISGWWSSDDN LDGEAGAFRS SGPASGLMTL GRQAERSQPR YFMHAYNTIS BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 ISGWWSSDDN LDGEGGAFRS SGPASGLMTL GRQAERSQPR YFMHAYNTIS 251 300 ENSTTRP00000010905/1-989 GHMLRAAKNN TAELTAPPPP PAPPATCPSL GVAADTNYVK RGSWSTLTLS bmy_09279T0/1-558 GHMLRAAKNN TAELTAPPPP PAPPATCPSL GVGADTNYVK RGSWSTLTLS ENSP00000363023/1-989 GHMLKTTKNN TTELTAPPPP PAPPATCPSL GVGTDTNYVK RGSWSTLTLS BACU015522/1-453 ---------- ---------- ---MALCL-- ---------- ---------- ENSBTAP00000002286/1-992 GHMLKAAKNT TTELTAPPPP PAPPATCPSL GVGTDTNYVK RGSWSTLTLS 301 350 ENSTTRP00000010905/1-989 HAHEVCQKTS ATLDKSLLKS KSCHQGLAYH YLQVPGGGGE WTTSLLS-RE bmy_09279T0/1-558 HAHEVCQKTS ATLDKSLLKS KSCHQGLAYH YLQVPGGGGE WTTSLLSPRE ENSP00000363023/1-989 HAHEVCQKTS ATLDKSLLKS KSCHQGLAYH YLQVPGGGGE WSTTLLSPRE BACU015522/1-453 ---------- -----ELLKQ --C------- ---------- ---------- ENSBTAP00000002286/1-992 HAHEVCQKTS ATLDKSLLKS KSCHQGLAYH YLQVPGGGGE WTTSLLSPRE 351 400 ENSTTRP00000010905/1-989 ADPTGEGPIP CRRMRSGSYI KAMGDEDSDE SGGSPKPSPK TAARRQS-LR bmy_09279T0/1-558 ADSTGEGPIP CRRMRSGSYI KAMGDEDSDE SGGSPKPSPK TAARRQSYLR ENSP00000363023/1-989 TDAAAEGPIP CRRMRSGSYI KAMGDEDSDE SGGSPKPSPK TAARRQSYLR BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 ADATAEGPIP CRRMRSGSYI KAMGDEDSDE SGGSPKPSPK TAARRQSYLR 401 450 ENSTTRP00000010905/1-989 ATQQSLGEQS NPRRSLDRLD SVDMLLPSKC PSWEEDYHPV SDSLNDSSCI bmy_09279T0/1-558 ATQQSLGEQS NPR------- ---------- -SWEEDYNAV SDSLNDSSCI ENSP00000363023/1-989 ATQQSLGEQS NPRRSLDRLD SVDMLLPSKC PSWEEDYTPV SDSLNDSSCI BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 ATQQSLGEQS NPRRSLDRLD SVDMLLPSKC PSWEEEYNPV SDSLNDSSCI 451 500 ENSTTRP00000010905/1-989 SQMFGQASLI PQLFGHEQQV READLSDQYE AACESACSEA ESTAAEALDL bmy_09279T0/1-558 SQIFGQASLI PQLFGHEQQV READLSDQYE AACESACSEA ESTAAEALDL ENSP00000363023/1-989 SQIFGQASLI PQLFGHEQQV REAELSDQYE AACESACSEA ESTAAETLDL BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 SQIFGQASLI PQLFGHEQQV READLSDQYE AACESACSEA ESTAAEALDL 501 550 ENSTTRP00000010905/1-989 PLPSYFRSRS HSYLRAIQAG CSQEEDSVSL QSLSPPPSTG SLSNSRTLPS bmy_09279T0/1-558 PLPSYFRSRS HSYLRAIQAG CSQEEDSVSL QSLSPPPSTG SLSNSRTLPS ENSP00000363023/1-989 PLPSYFRSRS HSYLRAIQAG CSQEEDSVSL QSLSPPPSTG SLSNSRTLPS BACU015522/1-453 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002286/1-992 PLPSYFRSRS HSYLRAIQAG CSQEEDSVSL QSLSPPPSTG SLSNSRTLPS 551 600 ENSTTRP00000010905/1-989 SSCLVAYKKT PPPVPPRTTS KPFISVTVQS STESAQDTYL DSQDHKSEVT bmy_09279T0/1-558 E-----YR-- ---------- ---------- ---------- ---------- ENSP00000363023/1-989 SSCLVAYKKT PPPVPPRTTS KPFISVTVQS STESAQDTYL DSQDHKSEVT BACU015522/1-453 SSCLVAYKKT PPPVPPRTTS KPFISVTVQS STESAQDTYL DSQDHKSEVT ENSBTAP00000002286/1-992 SSCLVAYKKT PPPVPPRTTS KPFISVTVQS STESAQDTYL DSQDHKSEVT 601 650 ENSTTRP00000010905/1-989 SQSGLSNSSD SLDSSTRPPS VTRGGVTPAP EAPEPPPKHA ALKSEQGTLT bmy_09279T0/1-558 ---------- ---------- ---------- ---------- ---------- ENSP00000363023/1-989 SQSGLSNSSD SLDSSTRPPS VTRGGVAPAP EAPEPPPKHA ALKSEQGTLT BACU015522/1-453 SQSGLSNSSD SLDSSTRPPS VTRGGVTPAP EAPEPPPKHA ALKSEQGTLT ENSBTAP00000002286/1-992 SQSGLSNSSD SLDSSTRPPS VTRGGVTPAP EAPEPPPKHA ALKSEQGTLT 651 700 ENSTTRP00000010905/1-989 SSESHPEAIP KRKLSSIGIQ XXXXX--XXX XXXXXXXXXX XXXXXXXXXX bmy_09279T0/1-558 ---------- ---------- ---------- ---------- ---------- ENSP00000363023/1-989 SSESHPEAAP KRKLSSIGIQ ERTRRNGSHL SEDNGP---- KAIDVMAPSS BACU015522/1-453 SSESHPEAIP KRKLSSIGIQ VDCIQ--PVP KEEPSPATKF QSIGVQVEDD ENSBTAP00000002286/1-992 SSESHPEAIP KRKLSSIGIQ VDCIQ--PVP NEEPSPATKF QSIGVQVEDD 701 750 ENSTTRP00000010905/1-989 XXSSAPSHSM SSRRDTDSDT QDANDSSCKS SERSLP-CTP HPESISIDAG bmy_09279T0/1-558 ---------- ---------- ---------- ---------- -------DGG ENSP00000363023/1-989 -ESSVPSHSM SSRRDTDSDT QDANDSSCKS SERSLPDCTP HPNSISIDAG BACU015522/1-453 WRSSAPSHSM SSRRDTDSDT QDANDSSCKS SERSLPDCTP HPDSISIDAG ENSBTAP00000002286/1-992 WRSSAPSHSM SSRRDTDSDT QDANDSSCKS SEKSLPDCTP HPNSISIDAG 751 800 ENSTTRP00000010905/1-989 PRQTLRIAQI KRNLSYGDDS DPALEASSLP PPDPWLETSS SSPAEPAQPG bmy_09279T0/1-558 PRG------- ---------- ---------- PLGPFLV--- ---------- ENSP00000363023/1-989 PRQAPKIAQI KRNLSYGDNS DPALEASSLP PPDPWLETSS SSPAEPAQPG BACU015522/1-453 PRQTPRIAQI KRNLSYGDDS DPALEASSLP PPDPWLETSS SSPAEPAQPG ENSBTAP00000002286/1-992 PRQAPKIAQI KRNLSYGDNS DPALEASSLP PPDPWLETSS SSPAEPAQPG 801 850 ENSTTRP00000010905/1-989 ACRRDGYWFL KLLQAETERL EGWCCQMDKE TKENSLSEEV LGKVLSAVGS bmy_09279T0/1-558 ----DRRW-- -------GGI HGW------- ---------- ---------- ENSP00000363023/1-989 ACRRDGYWFL KLLQAETERL EGWCCQMDKE TKENNLSEEV LGKVLSAVGS BACU015522/1-453 ACRRDGYWFL KLLQAETERL EGWCCQMDKE TKENSLSEEV LGKVLSAVGS ENSBTAP00000002286/1-992 ACRRDGYWFL KLLQAETERL EGWCCQMDKE TKENNLSEEV LGKVLSAVGS 851 900 ENSTTRP00000010905/1-989 AQLLMSQKFQ QFRGLCEQNL NPDANPRPTA QDLAGFWDLL QLSIEDISMK bmy_09279T0/1-558 ---------- ---------- ---------- ---------- ---------- ENSP00000363023/1-989 AQLLMSQKFQ QFRGLCEQNL NPDANPRPTA QDLAGFWDLL QLSIEDISMK BACU015522/1-453 AQLLMSQKFQ QFRGLCEQNL NPDANPRPTA QDLAGFWDLL QLSIEDISMK ENSBTAP00000002286/1-992 AQLLMSQKFQ QFRGLCEQNL NPDANPRPTA QDLAGFWDLL QLSIEDISMK 901 950 ENSTTRP00000010905/1-989 FDELYHLKAN SWQLVETPEK RKEEKKLPPP VPKKPAKSKP AVSRDKASDA bmy_09279T0/1-558 ---------- ---------- ---------- ---------- ---------- ENSP00000363023/1-989 FDELYHLKAN SWQLVETPEK RKEEKKPPPP VPKKPAKSKP AVSRDKASDA BACU015522/1-453 FDELYHLKAN SWQLVETPEK RKEEKKPPPP VPKKPAKSKP AVSRDKASDA ENSBTAP00000002286/1-992 FDELYHLKAN SWQLVETPEK RKEEKKAPPP VPKKPAKSKP AVSRDKASDA 951 1000 ENSTTRP00000010905/1-989 GDKQRQEARK RLLAAKRAAS VRQNSATESA DSIEIYVPEA QTRL bmy_09279T0/1-558 ---------- ---------- ---------- ---------- ---- ENSP00000363023/1-989 SDKQRQEARK RLLAAKRAAS VRQNSATESA DSIEIYVPEA QTRL BACU015522/1-453 GDKQRQEARK RLLAAKRAAS VRQNSATESA DSIEIYVPEA QTRL ENSBTAP00000002286/1-992 GDRQRQEARK RLLAAKRAAS VRQNSATESA DSIEIYVPEA QTRL