KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:10 2014 Check: 00 .. Name: ENSTTRP00000010835/1-363 Len: 375 Check: 5922 Weight: 1.00 Name: ENSP00000378248/1-367 Len: 375 Check: 4341 Weight: 1.00 Name: bmy_16455T0/1-203 Len: 375 Check: 1910 Weight: 1.00 Name: BACU014376/1-203 Len: 375 Check: 1910 Weight: 1.00 Name: ENSBTAP00000002291/1-149 Len: 375 Check: 9820 Weight: 1.00 // 1 50 ENSTTRP00000010835/1-363 MNTNVCVEAG PSPDAPGLPK ESHLPEGALN SLVDYHSEME RYRSFATSFY ENSP00000378248/1-367 MNTNVCVEPG PSPEAPGLPK ESHLPEGALN SLVDYNSEME RYRSFATSFY bmy_16455T0/1-203 ---------- ---------- ---------- ---------- ---------- BACU014376/1-203 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002291/1-149 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010835/1-363 -TNGGAFPQA DRSGGI-IPI FPXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378248/1-367 KTNGGAFPQA AKIARITTPI FPSSAAAAAA AARIGMSPWN CDNAATAAAA bmy_16455T0/1-203 ---------- ---------- ---------- ---------- ---------- BACU014376/1-203 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002291/1-149 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010835/1-363 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378248/1-367 TAMLWGSGGG GGGGGGGGGG GGGGGGGGGG GGGGRKSSSA AASSSASSSS bmy_16455T0/1-203 ---------- ---------- ---------- ---------- ---------- BACU014376/1-203 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002291/1-149 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000010835/1-363 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXGCPPELSF QMAN-DLLSA ENSP00000378248/1-367 AILPAGGGGG GGGGGSRTSM HHRNDSQRLG KAGCPPEPSL QMANTNFLST bmy_16455T0/1-203 ---------- ---------M HHRNDSQRLG KAGCPPEPSL QMANTNFLST BACU014376/1-203 ---------- ---------M HHRNDSQRLG KAGCPPEPSL QMANTNFLST ENSBTAP00000002291/1-149 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000010835/1-363 LSPEQCRPVA GECRNKLKCG AAKAEIMNLP VCVGTL-AIP ALGGFSYLPG ENSP00000378248/1-367 LSPEHCRPLA GECMNKLKCG AAEAEIMNLP ERVGTFSAIP ALGGISLPPG bmy_16455T0/1-203 LSPEHCRPLA GECMNKLKCG AAEAEIMNLP ERVGTFSAIP ALGGISLPPG BACU014376/1-203 LSPEHCRPLA GECMNKLKCG AAEAEIMNLP ERVGTFSAIP ALGGISLPPG ENSBTAP00000002291/1-149 ---------- ---------G AAEAEIMNLP ERVGTFSAIP ALGGISLPLG 251 300 ENSTTRP00000010835/1-363 VIVMTALHSP AAASAAVTDS AFQIANLADC PQNHSSSSSS SSGGAGGANP ENSP00000378248/1-367 VIVMTALHSP AAASAAVTDS AFQIANLADC PQNHSSSSSS SSGGAGGANP bmy_16455T0/1-203 VIVMTALHSP AAASAAVTDS AFQIANLADC PQNHSSSSSS SSGGAGGANP BACU014376/1-203 VIVMTALHSP AAASAAVTDS AFQIANLADC PQNHSSSSSS SSGGAGGANP ENSBTAP00000002291/1-149 VIVMTALHSP AAASAAVTDS AFQIANLADC PQNHSSSSSS SSGGAGGANP 301 350 ENSTTRP00000010835/1-363 AKKKRKRCGV CVPCKRLINC GVCSSCRNRK TGHQICKFRK CEELKKKPGT ENSP00000378248/1-367 AKKKRKRCGV CVPCKRLINC GVCSSCRNRK TGHQICKFRK CEELKKKPGT bmy_16455T0/1-203 AKKKRKRCGV CVPCKRLINC GVCSSCRNRK TGHQICKFRK CEELKKKPGT BACU014376/1-203 AKKKRKRCGV CVPCKRLINC GVCSSCRNRK TGHQICKFRK CEELKKKPGT ENSBTAP00000002291/1-149 AKKKRKRCGV CVPCKRLINC GVCSSCRNRK TGHQICKFRK CEELKKKPGT 351 400 ENSTTRP00000010835/1-363 SLE------- -RTPVPSAEA FRWFF ENSP00000378248/1-367 SLE------- -RTPVPSAEA FRWFF bmy_16455T0/1-203 SLEGFLSGFK MQYPFPEASF RL--- BACU014376/1-203 SLEGFLSGFK MQYPFPEASF RL--- ENSBTAP00000002291/1-149 SLE------- MQSPFPEASF RFWYF