KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:14 2014 Check: 00 .. Name: ENSP00000252575/1-1321 Len: 1370 Check: 1494 Weight: 1.00 Name: ENSBTAP00000002312/1-1347 Len: 1370 Check: 8051 Weight: 1.00 Name: ENSTTRP00000007268/1-1319 Len: 1370 Check: 3630 Weight: 1.00 Name: bmy_02655T0/1-1254 Len: 1370 Check: 9302 Weight: 1.00 Name: BACU016634/1-1355 Len: 1370 Check: 387 Weight: 1.00 // 1 50 ENSP00000252575/1-1321 MGAPFVWALG LLMLQMLLFV AGEQGTQDIT ---DASERGL HMQKLGSGSV ENSBTAP00000002312/1-1347 MGALSVWVSG LLTLQMLLFV AGEQGPQHTT AAAATAEKGL HMQKVGSGSV ENSTTRP00000007268/1-1319 MGAMSVWVSG LLILQMLLFV AGEQGTQDAT -AAATAEKGL HMQKVGSGSV bmy_02655T0/1-1254 ---------- ---------- ---------- ---------- -MQKVGSGSV BACU016634/1-1355 MGAMSVWVSG LLILQMLLFV AGEQGTQDAT -AAATAEKGL HMQKVGSGSV 51 100 ENSP00000252575/1-1321 QAALAELVAL PCLFTLQPRP SAARDAPRIK WTKVRTASGQ RQDLPILVAK ENSBTAP00000002312/1-1347 RAALAELVAL PCLFSLRPRP GAAREAPRIK WTKVRTASGQ RQDLPILVAK ENSTTRP00000007268/1-1319 RAALAELVAL PCLFTLWPRP GAAREAPRIK WTKVRTASGQ RQDLPILVAK bmy_02655T0/1-1254 RAALAELVAL PCLFTLWPRP GAAREAPRIK WTKVRTASGQ RQDLPILVAK BACU016634/1-1355 RAALAELVAL PCLFTLWPRP GAAREAPRIK WTKVRTASGQ RQDLPILVAK 101 150 ENSP00000252575/1-1321 DNVVRVAKSW QGRVSLPSYP RRRANATLLL GPLRASDSGL YRCQVVRGIE ENSBTAP00000002312/1-1347 DNVVRVAKGW QGRVSLPAYP RHRVNATLLL GPLRASDSGL YRCQVVRGIE ENSTTRP00000007268/1-1319 DNVVRVAKGW QGRVSLPAYP RHRVNATLLL GPLRASDSGL YRCQVVRGIE bmy_02655T0/1-1254 DNVVRVAKGW QGRVSLPAYP RHRVNATLLL GPLRASDSGL YRCQVVRGIE BACU016634/1-1355 DNVVRVAKGW QGRVSLPAYP RHRVNATLLL GPLRASDSGL YRCQVVRGIE 151 200 ENSP00000252575/1-1321 DEQDLVPLEV TGVVFHYRSA RDRYALTFAE AQEACRLSSA IIAAPRHLQA ENSBTAP00000002312/1-1347 DEQDLVPLEV TGVVFHYRAA LDRYSLTFAE AQEACLLNSA TIAAPRHLQA ENSTTRP00000007268/1-1319 DEQDLVPLEV TGVVFHYRAA QDRYSLTFAE AQDACRLNSA TIAAPRHLQA bmy_02655T0/1-1254 DEQDLVPLEV TGVVFHYRAA QDRYSLTFAE AQEACRLNSA TIAAPRHLQA BACU016634/1-1355 DEQDLVPLEV TGVVFHYRAA QDRYSLTFAE AQEACRLNSA TIAAPRHLQA 201 250 ENSP00000252575/1-1321 AFEDGFDNCD AGWLSDRTVR YPITQSRPGC YGDRSSLPGV RSYGRRNPQE ENSBTAP00000002312/1-1347 AFEDGFDNCD AGWLSDRTVR YPITQSRPGC YGDRSSLPGV RNYGRRDPRE ENSTTRP00000007268/1-1319 AFEDGFDNCD AGWLSDRTVR YPITQSRPGC YGDRSSLPGV RNYGRRDPRE bmy_02655T0/1-1254 AFEDGFDNCD AGWLSDRTVR YPITQSRPGC YGDRSSLPGV RNYGRRDPRE BACU016634/1-1355 AFEDGFDNCD AGWLSDRTVR YPITQSRPGC YGDRSSLPGV RNYGRRDPRE 251 300 ENSP00000252575/1-1321 LYDVYCFARE LGGEVFYVGP ARRLTLAGAR AQCRRQGAAL ASVGQLHLAW ENSBTAP00000002312/1-1347 LYDVYCFARE LGGEVFYVGL ARRLTLAGAR AQCRRQGAVL ASVGQLHLAW ENSTTRP00000007268/1-1319 LYDVYCFARE LGGEVFYVGL ARRLTLAGAR AQCRRQGAVL ASVGQLHLAW bmy_02655T0/1-1254 LYDVYCFARE LGGEVFYVGL ARRLTLAGAR AQCRRQGAVL ASVGQLHLAW BACU016634/1-1355 LYDVYCFARE LGGEVFYVGL ARRLTLAGAR AQCRRQGAVL ASVGQLHLAW 301 350 ENSP00000252575/1-1321 HEGLDQCDPG WLADGSVRYP IQTPRRRCGG PAPGVRTVYR FANRTGFPSP ENSBTAP00000002312/1-1347 HEGLDQCDPG WLADGSVRYP IQTPRRRCGG PAPGVRTVYR FANRTGFPAP ENSTTRP00000007268/1-1319 HEDLDQCDPG WLADGSVRYP IQTPRRRCGG PVPGVRTVYS FANRTRFPAP bmy_02655T0/1-1254 HEGLDQCDPG WLADGSVRYP IQTPRRRCGG PVPGVRTVYS FANRTRFPAP BACU016634/1-1355 HEGLDQCDPG WLADGSVRYP IQTPRRRCGG PVPGVRTVYS FANRTRFPAP 351 400 ENSP00000252575/1-1321 AERFDAYCFR AHHPTSQHGD LETPSSGDEG EILSAEGPPV RELEPTL-EE ENSBTAP00000002312/1-1347 GERFDAYCFR AHHPTSQHGD PETPSSGDEG EILSAEGPPA GELEPSLQEE ENSTTRP00000007268/1-1319 RERYDAYCFR AHHPTSQHGN PETPSSGDEG EILSAEGPPA QELEPSL-EE bmy_02655T0/1-1254 GERYDAYCFR AHHPTSLHGN SEMPSSGDEG EILSAEGPPA QELEPSL-EE BACU016634/1-1355 GERYDAYCFR AHHPTSLHGN PETPSSGDEG EILSAEGPPA QELEPSL-EE 401 450 ENSP00000252575/1-1321 EEVVTPDFQE PLVSSGEEET LILEEKQESQ QTLSPTPGDP MLASWP---T ENSBTAP00000002312/1-1347 EEVVTPDIQE PLVSSGEEES LILAEKQESQ ATPSRAPGVP TLASSPALEA ENSTTRP00000007268/1-1319 EEVVTPDFQE PLVSSGEEEP LILAEKQESR ETPSPATGGL TLASRPALEA bmy_02655T0/1-1254 EEVVTPDFQE PLVSSGEEEP LILAEKQESR ETPSPATGGL TLASRPALEA BACU016634/1-1355 EEVVTPDFQE PLVSSGEEEP LILAEKQESR ETPSPATGGL TLASRPAPEA 451 500 ENSP00000252575/1-1321 GEVWLSTVAP SPSDMGAGTA ASSHTEVAPT DPMPRRRGRF KGLNGRYFQQ ENSBTAP00000002312/1-1347 EEVWLSTVAP SHSSVEAGTV VGTHTDTAPA STTPRKRERF KGLNGRHFQQ ENSTTRP00000007268/1-1319 EEVWLSTVSP APGNVEAGTA VGRHTEATPA SPMPRRRGRF KGLNGRHFQQ bmy_02655T0/1-1254 EEVWLSTVSP APSNVEAGTA VGMHTEATPA STMPRRRGRF KGLNGRHFQQ BACU016634/1-1355 EEVWLSTVSP APSNVEAGTA VGMHTEATPA STMPRRRGRF KGLNGRHFQQ 501 550 ENSP00000252575/1-1321 QEPEPGLQGG MEASAQPPTS EAAVNQMEPP LAMAVTEMLG SGQSRSPWAD ENSBTAP00000002312/1-1347 QEPQQGLKGA LEASIQPPTP EAAENYVEPP MTTGTTDALG SGQSQSPWAV ENSTTRP00000007268/1-1319 QEPQRGLKSA LQASVQPPTP EVAGNYVEPP LATGATDALG SGRSQSPWAV bmy_02655T0/1-1254 QEPQRGLKGV LQASVQPPTP EVAGNYVEPP LATGATDALG SGRSQSPWAV BACU016634/1-1355 QEPQRGLKGV LQASVQPPTP EVAGNYVEPP LATGATDALG SGRSQSPWAV 551 600 ENSP00000252575/1-1321 LTNEVDMPGA GSAGGKSSPE PWLWPPTMVP PSISGHSRAP VLELEKAEGP ENSBTAP00000002312/1-1347 LTNEVEMPRA GSLGGRSPQE PWLWLPTVVP PIIPDPSRAL GLELGEAKRF ENSTTRP00000007268/1-1319 LTNEVDVPGA GSPGGRSPPE PWLWPPTMVP PI------TL GLELEEAKGP bmy_02655T0/1-1254 LTNEVDVPGA GSPGGRSPPE PWLWPPTMVP PI------TL GLELEEAKGP BACU016634/1-1355 LTNEVDVPGA GSPGGTSPPE PWLWPPTMVP PI------TL GLELEEAKGP 601 650 ENSP00000252575/1-1321 SARPATPDLF WSPLEAT--- ---VSAPSPA PWEAFPVATS PDLPMMAMLR ENSBTAP00000002312/1-1347 SMRPVTSDLP WSPSETT--- PNPSNGPSPT PWKASPVAIS PDLPVMAMLR ENSTTRP00000007268/1-1319 SVRPATPDLP WSSSEAT--- ---ALAPSTA RWEASPTVIS PDLPVMAMLR bmy_02655T0/1-1254 SVRPATPDLP WSSSEATALA PNPLKGPSTA RWEASPTVIS PDLPVMAMLR BACU016634/1-1355 SVRPATPDLP WSSSEATALA PNPLKGPSTA RWEAPPTVIS PDLPVMAMLR 651 700 ENSP00000252575/1-1321 GPKEWMLPH- -PTPISTEAN RVEAHGEATA TAPPSPAAET ---------- ENSBTAP00000002312/1-1347 APKLWLLSQE PPTSLPTEAS GVKGHSEAMA TALPSPASEI EASPQDPIHL ENSTTRP00000007268/1-1319 GHKLWLLSH- -PTPLPTDAS EVKGYNEAMA AAPPSPASEI ---------- bmy_02655T0/1-1254 APKLWLLSH- -PTPLPTDAS EVKGYSEAMA AAPPSPASEI EASPQDPIHP BACU016634/1-1355 APKLWLLSH- -PTPLPADAS EVKGYSEAMA AAPPSPASEI EASPQDPIHP 701 750 ENSP00000252575/1-1321 KVYSLPLSLT PTGQGGEAMP TT-------- ---------- ------PESP ENSBTAP00000002312/1-1347 EVYSPPSSSG LAGQDGESTS LSLST----- ---------- -----SPNSP ENSTTRP00000007268/1-1319 EVYSLPSSSG LMGQGGEATS LT-------- ---------- ------PNSF bmy_02655T0/1-1254 EVYSLPSSLG LTGQGGEATS PTLSSHGEGS PTAPLQAATD TQAGAGPNSF BACU016634/1-1355 EAYSLPASLG LTGQGGEATT PTLSSHGEGG PTAPLQAATD TQAGAGPNSF 751 800 ENSP00000252575/1-1321 RADFRETGET SPAQVNKAEH SSSSPWPSVN RNVAVGFVPT ETATEPTGLR ENSBTAP00000002312/1-1347 GADFGNTRGA SPTELSKAEH PGSSPQASVD WNVVADITIS EPATEPMGAR ENSTTRP00000007268/1-1319 RADFGKTGGT SPTGLSKAEP PRSNPQASVD GNVVAAVTPT ETAPEPMGAR bmy_02655T0/1-1254 RADFGKTGGA SPTGLSKAEH PRSNPQASVD GNVVAAITPT ETATEPMGAR BACU016634/1-1355 RADFGKIGGT SPTGLSKAEH PRSNPQASVD GNVVAAVTPT ETATEPMGAR 801 850 ENSP00000252575/1-1321 GIPGSESGVF DTAESPTSGL QATVDEVQDP WPSVYSKGLD ASSPSAPLGS ENSBTAP00000002312/1-1347 GVSESESGVF NTAESPTSSL QASMDKTQEI WASLHREGLD PHSPSAPLGV ENSTTRP00000007268/1-1319 GVLGSESAVF NTAETPTSSL QANMDEAQGM WRSLHSEGLD PHSPSAPLGV bmy_02655T0/1-1254 GILGSESGVF NTAETPTSSL QANMDEAQGM WPSLHSEGLD PHSPSVLLGV BACU016634/1-1355 GILGSESGVF NTAETPTSSL QANMDEAQGM WPSLHSEGLD PHSPSVLLGV 851 900 ENSP00000252575/1-1321 PGVFLVPKVT PNLEPWVATD EGPTVNPMDS TVTPAPSDAS GIWEPGSQVF ENSBTAP00000002312/1-1347 PEVPLMPKFT PGLGPWAATD GGVTVDPMAS TVTLDTSDAG GHWEPGSHMV ENSTTRP00000007268/1-1319 PRVSLMLKVT PRLEPSAATD GGATVAPMNS MATLDTRGAG GNWEPGSHVV bmy_02655T0/1-1254 PGVSLMPKVT PHLEPSAATD GGATVGPMDS MATLDTSDAG GNWEPGSHVV BACU016634/1-1355 PGVSLMPKVT PHLEPSAATD GGAAVGPMES MATLDTSDAG GNWEPGSHVV 901 950 ENSP00000252575/1-1321 EEAESTTLSP QVALDTSIVT PLTTLEQGDK VGVPAMSTLG SSSSQPHPEP ENSBTAP00000002312/1-1347 EGAESPTLSP QMAVDTSVVT SVTSLDLGDK VRVLAVFTVA SSSSQPHPEP ENSTTRP00000007268/1-1319 EGAENPTLNP QMAVDTSVVM SLMSLDLGDK VGVLAMSTMA SSNSQPHPEP bmy_02655T0/1-1254 EGAESPTLSP QMAVDTSVVM SLMSLDLGDK VGVLAMSTMA SSSSQPHPEP BACU016634/1-1355 EGDESPTLSP QVAVDTSVVM SLMSLDLGDK VGVLAMSTMA SSSSQPHPEP 951 1000 ENSP00000252575/1-1321 EDQVETQGTS GASVPPHQSS PLGKPAVPPG TPTAASVGES ASVSSGEPTV ENSBTAP00000002312/1-1347 ESQLVTQGTL GALEPPQEGS HSGDPILPPW TPTAANKDEP ISVSSGEPTV ENSTTRP00000007268/1-1319 EGQMVTQGTL RGLEPPREGS PSGEPALPPW TPTAASKDKP ISVSSGEPIV bmy_02655T0/1-1254 EGQMVTQGTL RGLEPPHEGS PSGEPALPPW TPTAASEDKP ISVSSGEPTV BACU016634/1-1355 EGQVVTQGTL RGLEPPHEGS P-----LPPW TPTAASEDKP ISVSSGEPLV 1001 1050 ENSP00000252575/1-1321 PWDPSSTLLP VTLGIEDFEL EVLAGSPGVE SFWEEVASGE EPALPGTPMN ENSBTAP00000002312/1-1347 PWDSPSTLLP ASLGPEEFEL EVLMGSPSVE SFWEEAASGE EPALPGTPAN ENSTTRP00000007268/1-1319 PWDSPSTLLP ASLGPEEFEL EVLAGSPGVE SFWVEAASGE EPALPGTPAN bmy_02655T0/1-1254 PWDSPSTLLP ASLGPEEFEL EVLAGSPGVE SFWEEAASGE EPALPGTPAN BACU016634/1-1355 PWDSPSTLLP ASLGPEEFEL EVLAGSPGVE SFWEEAASGE EPALPGTPAN 1051 1100 ENSP00000252575/1-1321 AGAEEVHSDP CENNPCLHGG TCNANGTMYG CSCDQGFAGE NCEIDIDDCL ENSBTAP00000002312/1-1347 GSAEEGPLDP CENNPCLHGG TCRANGTMYG CSCDQGFAGE NCEIDIDDCI ENSTTRP00000007268/1-1319 GSAEEXXXXX XXXXPCLH-G TCKANGTMYG CSCDQGFAGE NCEIDIDDCL bmy_02655T0/1-1254 GSAEE----- ---------- ---------- ---------- ----DIDDCI BACU016634/1-1355 GSAEEVPSDP CENNPCLHGG TCEANGTMYG CSCDQGFAGE NCEIDIDDCI 1101 1150 ENSP00000252575/1-1321 CSPCENGGTC IDEVNGFVCL CLPSYGGSFC EKDTEGCDRG WHKFQGHCYR ENSBTAP00000002312/1-1347 SSPCENGGTC IDEVNAFICL CLPSYGGSLC EKDTEGCDHG WHKFQGHCYR ENSTTRP00000007268/1-1319 SSPCENGGTC IDEVNAFICL CLPSYGGSLC EKDTEGCDHG WHKFQGHCYR bmy_02655T0/1-1254 SSPCENGGTC IDEVNAFVCL CLPSYGGSLC EKDTEGCDHG WHKFQGHCYR BACU016634/1-1355 SSPCENGGTC IDEVNAFVCL CLPSYGGSLC EKDTEGCDHG WHKFQGHCYR 1151 1200 ENSP00000252575/1-1321 YFAHRRAWED AEKDCRRRSG HLTSVHSPEE HSFINSFGHE NTWIGLNDRI ENSBTAP00000002312/1-1347 YFAHRRAWED AERDCRRRAG HLTSIHSSEE HNFINSFGRE NTWIGLNDRI ENSTTRP00000007268/1-1319 YFAHRRAWED AERDCRRRAG HLTSIHSSEE HGFINSFGRE NTWIGLNDRI bmy_02655T0/1-1254 YFAHRRAWED AERDCRRRAG HLTSIHSPEE HGFINSFGRE NTWIGLNDRI BACU016634/1-1355 YFAHRRAWED AERDCRRRAG HLTSIHSPEE HGFINSFGRE NTWIGLNDRI 1201 1250 ENSP00000252575/1-1321 VERDFQWTDN TGLQFENWRE NQPDNFFAGG EDCVVMVAHE SGRWNDVPCN ENSBTAP00000002312/1-1347 VERDFQWTDN TGLQFENWRE NQPDNFFAGG EDCVVMVAHE SGRWNDVPCN ENSTTRP00000007268/1-1319 VERDFQWTDN TGLQYENWRE NQPDNFFAGG EDCVVMVSHE SGHWNDVPCN bmy_02655T0/1-1254 VERDFQWTDN TGL------- ---------- ---------- SGHWNDVPCN BACU016634/1-1355 VERDFQWTDN TGLQYENWRE NQPDNFFAGG EDCVVMVAHE SGHWNDVPCN 1251 1300 ENSP00000252575/1-1321 YNLPYVCKKG TVLCGPPPAV ENASLIGARK AKYNVHATVR YQCNEGFAQH ENSBTAP00000002312/1-1347 YNLPYVCKKG TVLCGPPPAV ENASPIGARK AKYNVHATVR YQCDEGFAQH ENSTTRP00000007268/1-1319 YNLPYVCKKG TVLCGPPPAV ENALPIGARK AKYNVHATVR YQCDEGFAQH bmy_02655T0/1-1254 YNLPYVCKKG TVLCGPPPAV ENALPIGARK AKYNVHATVR YQCDEGFAQH BACU016634/1-1355 YNLPYVCKKG TVLCGPPPAV ENALPIGARK AKYNVHATVR YQCDEGFAQH 1301 1350 ENSP00000252575/1-1321 HVATIRCRSN GKWDRPQIVC TKPRRSHRMR RHHHHHQHHH QHHHHKSRKE ENSBTAP00000002312/1-1347 HVAIIRCRSN GKWDRPQIIC TKPRRSHRMR RHHHHHQHHH QHRHHKSRKE ENSTTRP00000007268/1-1319 HVAIIRCRSN GKWDRPQIVC TKPRRSHRMR RHHHHHQHHH QHHHHKSRKE bmy_02655T0/1-1254 HVAIIRCRSN GKWDRPQIVC TKPRRSHRMR RHHHHHQHHH QHHHHKSRKE BACU016634/1-1355 HVAIIRCRSN GKWDRPQIVC TKPRRSHRMR RHHHHHQHHH QHHHHKSHKE 1351 1400 ENSP00000252575/1-1321 RRKHKKHPTE DWEKDEGNFC ENSBTAP00000002312/1-1347 RRKHKKHPAE DWEKEEGNFC ENSTTRP00000007268/1-1319 RRKHKKHPAE DWEKEEGNFC bmy_02655T0/1-1254 RRKHKKHPAE DWEKDEGNFC BACU016634/1-1355 RRKHKKHPAE DWEKDEGNFC