KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:17:15 2014 Check: 00 .. Name: ENSP00000291481/1-402 Len: 428 Check: 862 Weight: 1.00 Name: ENSTTRP00000009333/1-273 Len: 428 Check: 6235 Weight: 1.00 Name: bmy_02656T0/1-427 Len: 428 Check: 6691 Weight: 1.00 Name: ENSBTAP00000002313/1-322 Len: 428 Check: 7834 Weight: 1.00 // 1 50 ENSP00000291481/1-402 -------MVC AR-AALGPGA LWAAAWGVLL LTAPAGAQRG RKKVVHVL-- ENSTTRP00000009333/1-273 -------MVC APAAALGRGA LWAAAWGVLL LTGAAEAEHG RKKVVHVL-- bmy_02656T0/1-427 MVSGAVGSVC AP-AALGRGA LWAAAWGVLL LTGAAEAEHG RKKVVHVLGS ENSBTAP00000002313/1-322 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000291481/1-402 ---------- ------EGES GSVVVQTAPG QVVSHRGGTI VLPCRYHYEA ENSTTRP00000009333/1-273 ---------- ------EGES GSVVVQTAPG QVVSHRGGTI VLPCRYHYEA bmy_02656T0/1-427 PAPPREPLLN RLWLPIEGES GSVVVQTAPG QVVSHRGGTI VLPCRYHYEA ENSBTAP00000002313/1-322 ---------- ---------- --VVVQTAPG QVVSHRGGTI VLPCRYHYEA 101 150 ENSP00000291481/1-402 AAHGHDGVRL KWTKVVDPLA FTDVFVALGP QHRAFGSYRG RAELQGDGPG ENSTTRP00000009333/1-273 AAHGHDSVRL KWTKVVDPLA FADVFVALGA QHRAFGSYRG RAELQGDGPG bmy_02656T0/1-427 AAHGHDSVRL KWTKVVDPLA FADVFVALGA QHRAFGSYRG RAELQGDGPG ENSBTAP00000002313/1-322 ATHGHDGVRL KWTKVVDPLA FADVFVALGP QHRAFGSYRG RAELQGDGPG 151 200 ENSP00000291481/1-402 DASLVLRNVT LQDYGRYECE VTNELEDDAG MVKLDLEGVV FPYHPRGGRY ENSTTRP00000009333/1-273 DASLVLRNVT LQDYGRYECE VTNELEDDTG MVKLDLEGVV FPYHPRGGRY bmy_02656T0/1-427 DASLVLRNVT LQDYGRYECE VTNELEDDTG MVKLDLEGVV FPYHPRGGRY ENSBTAP00000002313/1-322 DASLVLRNVT LQDYGRYECE VTNELEDDTG MVKLDLEGVV FPYHPRGGRY 201 250 ENSP00000291481/1-402 KLTFAEAQRA CAEQDGILAS AEQLHAAWRD GLDWCNAGWL RDGSVQYPVN ENSTTRP00000009333/1-273 KLTFTEAQRA CAEQDGILAS AEQLHAAWRD GPDWCNAGWL RDGSVQYPVS bmy_02656T0/1-427 KLTFTEAQRA CAEQDGILAS AEQLHAAWRD GLDWCNAGWL RDGSVQYPVS ENSBTAP00000002313/1-322 KLTFAEAQRA CAEQDGILAS AEQLHAAWRD GLDWCNAGWL RDGSVQYPVS 251 300 ENSP00000291481/1-402 RPREPCGGLG GTGSAGGGGD ANGGLRNYGY RHNAEERYDA FCFTSNLPGR ENSTTRP00000009333/1-273 QPREPCGGLG GAGSAGAGGE PRGGVRNYGY RQNREGLYDA FCFTSISP-- bmy_02656T0/1-427 QPREPCGGLG GAGSAGAGGG ASGGVRNYGY RQNAEELYDA FCFTSNLPGR ENSBTAP00000002313/1-322 QPREPCGGLG GAGSAGAGGG ASGGVRNYGY RHNAEERYDA FCFTSNLPGR 301 350 ENSP00000291481/1-402 VFFLKPLRPV PFSGAARACA ARGAAVAKVG QLFAAWKLQL LDRCTAGWLA ENSTTRP00000009333/1-273 ---------- ---------- ---------- ---------- ---------- bmy_02656T0/1-427 VFFLKPLRPV PFAGAARACA ARGAAVAKVG QLFAAWKLQL LDRCTAGWLA ENSBTAP00000002313/1-322 VFFLKPLRPV PFSGAARACA ARGAAVAKVG QLFAAWKLQL LDRCTAGWLA 351 400 ENSP00000291481/1-402 DGSARYPIVN PRARCGGRRP GVRSLGFPDA TRRLFGVYCY RAPGAPDPAP ENSTTRP00000009333/1-273 ---------- ---------- ---------- ---------- ---------- bmy_02656T0/1-427 DGSARYPIVN PRTRCGGRRP GVRSLGFPDA TRRLFGVYCY RAPGAPDPAP ENSBTAP00000002313/1-322 DGSARYPIVN PRARCGGRRP GVRSLGFPDA SRRLFGVYCY RAPG------ 401 450 ENSP00000291481/1-402 GGWGWGWAGG GGWAGGARDP AAWTPLHV ENSTTRP00000009333/1-273 ---------- ---------- -------- bmy_02656T0/1-427 GGWGWGWAGG GGWAGGARDP AAWTPLRV ENSBTAP00000002313/1-322 ---------- ---------- --------