KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:18 2014 Check: 00 .. Name: ENSP00000249396/1-389 Len: 470 Check: 947 Weight: 1.00 Name: ENSTTRP00000011179/1-379 Len: 470 Check: 4890 Weight: 1.00 Name: ENSBTAP00000002327/1-390 Len: 470 Check: 5351 Weight: 1.00 Name: bmy_16329T0/1-368 Len: 470 Check: 9950 Weight: 1.00 Name: BACU008331/1-426 Len: 470 Check: 1949 Weight: 1.00 // 1 50 ENSP00000249396/1-389 ---------- ---------- ---------- -------MAE PDPSHPLETQ ENSTTRP00000011179/1-379 ---------- ---------- ---------- --------RA PAPRPWLSR- ENSBTAP00000002327/1-390 ---------- ---------- ---------- -------MAD PDPSDPEETQ bmy_16329T0/1-368 ---------- ---------- ---------- -------MAE PDPSDPVETQ BACU008331/1-426 MAPGSCSSLP CLGPLLFPVP SRGRAVGDST EGPRPAPMAE PDPSDPLETQ 51 100 ENSP00000249396/1-389 AGKVQEAQDS DSDSEGGAAG GEADMDFLRN LFSQTLSLGS QKERLLDELT ENSTTRP00000011179/1-379 -------IDS DSDTEGGAAG GEGEMDFLRN FFSQTLGLGT QKERLLDELT ENSBTAP00000002327/1-390 AGKVQEAQDS DSDTEAGATG GEAEMDFLRN FFSQTLGLGT QKERLLDELT bmy_16329T0/1-368 AGKVQEAQDS DSDTEGGAAG GEGEMDFLRN FFSQTLGLGT QKERLLDELT BACU008331/1-426 AGKVQEAQDS DSDTEGGAAG AEGEMDFLRN FFSQTLGLGT QKEHLLDELT 101 150 ENSP00000249396/1-389 LEGVARYMQS ERCRRVICLV GAGISTSAGI PDFRSPSTGL YDNLEKYHLP ENSTTRP00000011179/1-379 LEGVTRYMQS ERXXXXXXXX XAG-STSAGI PDFRSPNTGL YANLEKYHLP ENSBTAP00000002327/1-390 LEGVSRYMQS ERCRRVICLV GAGISTSAGI PDFRSPNTGL YANLEKYRLP bmy_16329T0/1-368 LEGVTRYMHS ERCRRVICLV GAGISTSAGI PDFRSPNTGL YANLEKYHLP BACU008331/1-426 LEGVTRYMQS ERCRRVICLV GAGISTSAGI PDFRSPNTGL YANLEKYHLP 151 200 ENSP00000249396/1-389 YPEAIFEISY FK-------- ---------- ---------- ---------- ENSTTRP00000011179/1-379 YPEAIFEIGY FK-------- ---------- ---------- ---------- ENSBTAP00000002327/1-390 YPEAIFEISY FK-------- ---------- ---------- ---------- bmy_16329T0/1-368 YPEAIFEIGY FKVXVPQGGT SVMGVGGGGV AASLQLSSHQ GHLGAHLPLR BACU008331/1-426 YPEAIFEISY FK-------- ---------- ---------- ---------- 201 250 ENSP00000249396/1-389 -----KHPEP FFALAKELYP GQFKPTICHY FMRLLKDKGL LLRCYTQNID ENSTTRP00000011179/1-379 -----KHPEP FFALTAELLP GQFKXXXXXX XXXXXXXXXX XXXXXXXNID ENSBTAP00000002327/1-390 -----KHPEP FFALAKELYP GQFKPTICHY FIRLLKEKGL LLRCYTQNID bmy_16329T0/1-368 LSLPQKHPEP FFALAKELYP GQFK------ ---------- -------NID BACU008331/1-426 -----KHPEP FFALAKELYP GQFKPTICHY FIRLLKEKGL LLRCYTQNID 251 300 ENSP00000249396/1-389 TLERIAGLEQ EDLVEAHGTF YTSHCVSASC RHEYPLSWMK EKIFSEVTPK ENSTTRP00000011179/1-379 TLERVAGLEA EDLVEAHGTF YTSHCISPVC RQEYALSWMK EKIFSEVTPK ENSBTAP00000002327/1-390 TLERVAGLEP EDLVEAHGTF YTSHCISSGC RQEYSLSWMK EKIFSEVTPK bmy_16329T0/1-368 TLERVAGLEA EDLVEAHGTF YTSHCISPVC RQEYTLSWMK EKIFSEVTPK BACU008331/1-426 TLERVAGLEA EDLVEAHGTF YTSHCISPVC RQEYTLSWMK EKIFSEATPK 301 350 ENSP00000249396/1-389 CEDCQSLVKP DIVFFGESLP ARFFSCMQSD FLKVDLLLVM GTSLQVQPFA ENSTTRP00000011179/1-379 CEKCRSVVKP DIVFFGENLP ARFFSCLQSD FLKVDLLIIM GTSLQVQPFA ENSBTAP00000002327/1-390 CEKCQSVVKP DIVFFGENLP ARFFSCMQSD FLKVDLLIIM GTSLQVQPFA bmy_16329T0/1-368 CEKCRSVVKP DIVFFGENLP ARFFSCLQSD FLKVDLLIIM GTSLQVQPFA BACU008331/1-426 CEKCRSVVKP DIVFFGENLP ARFFSCLQSD FLKVDLLIIM GTSLQVQPFA 351 400 ENSP00000249396/1-389 SLISKAPLST PRLLINKEKA GQSDPFLGMI MGLGGGMDFD SKKAYRDVAW ENSTTRP00000011179/1-379 SLISKAPLST PRLLINKEKT GQMDPFLGMM MGLGGGMDFD SKKAYRDVAW ENSBTAP00000002327/1-390 SLIGKAPLST PRLLINKEKT GQTDPFLGMM MALGGGMDFD SKKAYRDVAW bmy_16329T0/1-368 SLISK----- ---------- ---------- ---------- ------DVAW BACU008331/1-426 SLISKAPLST PRLLINKEKT GQTDPFLGMM MGLGGGMDFD SKKAYRDVAW 401 450 ENSP00000249396/1-389 LGECDQGCLA LAELLGWKKE LEDLVRREHA SIDAQSGAGV PNPSTSASPK ENSTTRP00000011179/1-379 LGDCDQGCLA LADLLGWKKE LEDLVRKEHA SIDAQSGSGA PNPTTSASSR ENSBTAP00000002327/1-390 LGDCDQGCLA LADLLGWKKE LEDLVRKEHA SIDAQSGSGA SNPATSASPR bmy_16329T0/1-368 LGDCDQGCLA LADLLGWKKE LEDLVRKEHA SIDAQSGSGT PNPATSASSR BACU008331/1-426 LGDCDQGCLA LADLLGWKKE LEDLVRKEHA SIDAQSGSGT PNPTTSASSR 451 500 ENSP00000249396/1-389 KS-PPPAKDE ARTTEREKPQ ENSTTRP00000011179/1-379 KS-PPPAKEE ARTTEGEKPQ ENSBTAP00000002327/1-390 NSPPPPTKEE PRTTEGEKPQ bmy_16329T0/1-368 KS-PLPAKEE ARTTEGEKPQ BACU008331/1-426 KS-PPPAKEE ARTTEGEKPQ