KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:18 2014 Check: 00 .. Name: ENSTTRP00000011186/1-282 Len: 340 Check: 9851 Weight: 1.00 Name: BACU008329/1-298 Len: 340 Check: 9364 Weight: 1.00 Name: ENSP00000292852/1-278 Len: 340 Check: 3958 Weight: 1.00 Name: bmy_16334T0/1-307 Len: 340 Check: 4574 Weight: 1.00 Name: ENSBTAP00000002336/1-279 Len: 340 Check: 6829 Weight: 1.00 // 1 50 ENSTTRP00000011186/1-282 LRPEMGARLS -RRRLPADPP IALDALPPEL LVEVLSHVPP RALVTRCRPV BACU008329/1-298 ----MGARPS -RRRLPADPP IALDALPPEL LVQVLSHVPP RALVTRCRPV ENSP00000292852/1-278 ----MGARLS -RRRLPADPS LALDALPPEL LVQVLSHVPP RSLVTRCRPV bmy_16334T0/1-307 ----MGARPS -RRRLPADPP IALDALPPEL LVQVLSHVPP RALVTRCRPV ENSBTAP00000002336/1-279 ----MGARPS RRRRLPADPP IALDALPPEL LVQVLSHVPP RALVMRCRPV 51 100 ENSTTRP00000011186/1-282 CRAWRDVVDG PTVWLLQLAR DRSAEGRALY AVAQRCPPNS EDEEEFPLCA BACU008329/1-298 CRAWRDVVDG PTVWLLQLAR DRSAEGRALY AVAQRCPPNS EDEEEFPLRA ENSP00000292852/1-278 CRAWRDIVDG PTVWLLQLAR DRSAEGRALY AVAQRCLPSN EDKEEFPLCA bmy_16334T0/1-307 CRAWRDVVDG PTVWLLQLAR DRSAEGRAFY AVAQRCPPNS EDEEEFPLRA ENSBTAP00000002336/1-279 CRAWRDVVDG PTVWLLQLAR DRSAEGRALY SVAQRCPPNS EDEEEFPLCA 101 150 ENSTTRP00000011186/1-282 LARYCLRAPL GRNLIFNSCG EQG------- ---------- ---------- BACU008329/1-298 LARYCLRAPL GRNLIFNSCG EQG------- ---------- ---------- ENSP00000292852/1-278 LARYCLRAPF GRNLIFNSCG EQG------- ---------- ---------- bmy_16334T0/1-307 LARYCLRAPL GRNLIFNSCG ERGCRGSGPS SRGGKKETKG MCRLEAQATW ENSBTAP00000002336/1-279 LARYCLRAPL GRNLIFNSCG EQG------- ---------- ---------- 151 200 ENSTTRP00000011186/1-282 --FRGWEVEH GGNGWAVEKN LILVPGAPSQ TCFVTSFE-- ---------- BACU008329/1-298 --FRGWEVEH GGNGWAVEKN LILVPGAPSQ TCFVTSFESL IHLECDVRFP ENSP00000292852/1-278 --FRGWEVEH GGNGWAIEKN LTPVPGAPSQ TCFVTSFE-- ---------- bmy_16334T0/1-307 KGFRGWEVEH GGNGWAVEKN LILVPGAPSQ TCFVTSFE-- ---------- ENSBTAP00000002336/1-279 --FRGWEVEH GGNGWAVEKN LIMMPGAPSQ TCFVTSFE-- ---------- 201 250 ENSTTRP00000011186/1-282 ---------W CFKRQLVDLV MEGVWQELLD SSQIEICVAD XXXXXXXXXX BACU008329/1-298 LADPTGSRGW CFKRQLVDLV MEGVWQELLD SSQIEICVAD WWGARENCGC ENSP00000292852/1-278 ---------W CSKRQLVDLV MEGVWQELLD SAQIEICVAD WWGARENCGC bmy_16334T0/1-307 ---------W CFKRQLVDLV MEGVWQELLD SSQMEICVAD WWGARENCGC ENSBTAP00000002336/1-279 ---------W CFKRQLVDLV MEGVWQELLD SAQIEICVAD WWGARENCGC 251 300 ENSTTRP00000011186/1-282 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVSHV FTNFGK---- BACU008329/1-298 IYRLRVRLLD MYENEVVKFS ASPNPVLQWT ERGCRQTQHP ESSYQKVSWG ENSP00000292852/1-278 VYQLRVRLLD VYEKEVVKFS ASPDPVLQWT ERGCRQVSHV FTNFGK---- bmy_16334T0/1-307 IYRLRVRLLD IYENEVVKFS ASPNPVLQWT ERGCRQVSHV FTNFGK---- ENSBTAP00000002336/1-279 IYRLRVRLLD VYENEVVKFS ASPNPVLQWT ERGCRQVSHV FTNFGK---- 301 350 ENSTTRP00000011186/1-282 ---GIRYVSF EQYGRDTRSW VGHYGALVTH SSVRVRIRLS BACU008329/1-298 FPGGTVVKNL PANAEDTGLS PGLGRSHVPR SN-------- ENSP00000292852/1-278 ---GIRYVSF EQYGRDVSSW VGHYGALVTH SSVRVRIRLS bmy_16334T0/1-307 ---GIRYVSF EQYGRDTRSW VGHYGALVTH SSVRVRIRLS ENSBTAP00000002336/1-279 ---GIRYVSF EQYGRDTRSW VGHYGTLVTH SSVRVRIRLS