KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:17:19 2014 Check: 00 .. Name: ENSTTRP00000004864/1-233 Len: 281 Check: 4259 Weight: 1.00 Name: bmy_10137T0/1-216 Len: 281 Check: 8717 Weight: 1.00 Name: ENSP00000340988/1-272 Len: 281 Check: 9730 Weight: 1.00 Name: ENSBTAP00000002337/1-273 Len: 281 Check: 6875 Weight: 1.00 // 1 50 ENSTTRP00000004864/1-233 ---------- ---------- ---------Y LVDLCGRTWQ ADG-LLLHSH bmy_10137T0/1-216 ---------- ---------- ---------- -------TWQ GDGLLLLRSH ENSP00000340988/1-272 MEACCLLQLP QRLLLLGAAA LTATALETAD LAELCGQTWQ GDG-LLLRSH ENSBTAP00000002337/1-273 --RCQLLQLP QRLLLLGAAT LTASALHTAD LVDLCGRTRQ ADG-LLLRSH 51 100 ENSTTRP00000004864/1-233 SASRRFYFVA PDTDSRLWMR AATPGDRIRF QFRFFLVYSL TP---AAPNT bmy_10137T0/1-216 SASRRFYFVA PDTDCRLWML AAAPGDRIRF QFRFFLVYSL TP---AAP-- ENSP00000340988/1-272 AASRRFYFVA PDTDCGLWVQ AAAPGDRIRF QFRFFLVYSL TP---APPAL ENSBTAP00000002337/1-273 SASRRFYFVA PDMDCGLWVR AAAPGDRIRL QFRFFLVYSL APPSMPPPAL 101 150 ENSTTRP00000004864/1-233 SSPAPAPEDP CAPGSYLQFY EGPPGAPWPL GARFCGLTIT GPVASSGDFL bmy_10137T0/1-216 NASSPAPEDP CAPGAYLQFY EGPPGAPRPL GARLCGLTMP GPVASSGDFL ENSP00000340988/1-272 NTSSPAPADP CAPGSYLQFY EGPPGAPRPL GSPLCGLNIP VPVASSGPFL ENSBTAP00000002337/1-273 NASAPLQADP CAPGSYLQLY EGPPGTPRPL GAPLCGLTIP APVTTSGDLL 151 200 ENSTTRP00000004864/1-233 GLRLVT---- ----FVGEV- SFRLGCCCAY FRCQNSRCVP PRLVCDP-RT bmy_10137T0/1-216 GLRLVTRGRQ PRVDFVGE-- ----DPVVPT SDVRTAGASP RAWCAIP--- ENSP00000340988/1-272 GLRLVTRGRQ PRVDFVGEVT SFRLGPCGAY FRCQNGRCIP SSLVCDPWGM ENSBTAP00000002337/1-273 GLRLVTRGRQ PRVDFVGEVT SFRLGSCGAY FPCRNGRCIP PSLVCDRWAM 201 250 ENSTTRP00000004864/1-233 DNCGDGSDQP SWPAANC--- --SGPSPVPS QEGXXXXXXX XXXXXXXXXX bmy_10137T0/1-216 ---------G AWTTVAMAVT RLRGQQP-TA EEGSTDDGTS RPLTLPLARG ENSP00000340988/1-272 DNCGDGSDQG SWSPADC--- --RGPSPVPS QTGSTDAHTS RSLTPSPALG ENSBTAP00000002337/1-273 DNCGDGSDQA SWPPANC--- --GAASPESS QEGNTDDSTS QTLTPSAALP 251 300 ENSTTRP00000004864/1-233 XXXXXXXXXX XXXXXXXXXX XXXXXXXXTG S bmy_10137T0/1-216 SAGPLGIAAE RSPPARRDPA RQDAAPE--- - ENSP00000340988/1-272 SAGSLWIAAE RSSPAGRDPT RQDAALEGST E ENSBTAP00000002337/1-273 SSGPLGTAAE MSPPAHWDPA RQGVALEGRW L