KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:20 2014 Check: 00 .. Name: ENSP00000353826/1-959 Len: 961 Check: 213 Weight: 1.00 Name: ENSBTAP00000002350/1-961 Len: 961 Check: 6112 Weight: 1.00 Name: ENSTTRP00000012901/1-956 Len: 961 Check: 2543 Weight: 1.00 Name: bmy_06935T0/1-880 Len: 961 Check: 4168 Weight: 1.00 Name: BACU002586/1-843 Len: 961 Check: 1065 Weight: 1.00 // 1 50 ENSP00000353826/1-959 MAASTGYVRL WGAARCWVLR RPMLAAAGGR VPTAAGAWLL RGQRTCDASP ENSBTAP00000002350/1-961 MAGGTGCVRL WGAARCWTLR RPLLAAAGGR VPTAARAWLP RGRRACDASP ENSTTRP00000012901/1-956 MAAGAGYVRL WGAARCWALR RPLLAAAGGW VPTAARAWLP RGRRACDASP bmy_06935T0/1-880 ---------- ---------- ---------- ---------- ---------- BACU002586/1-843 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000353826/1-959 PWALWGRGPA IGGQWRGFWE ASSR-GGGAF SGGEDASEGG AEEGAGGAGG ENSBTAP00000002350/1-961 PWALWGQSPA AAGHWRGLWE ANNRSGGGAF SGGEDASEGG AEDGASGVGG ENSTTRP00000012901/1-956 PWALRGQGPA AAGHWRGLRD ANNRSGGGAF SGGEDASEGG AEDGASGVGG bmy_06935T0/1-880 ---------- ---------- --------AF SGGEDASEGG AEDGASGVGG BACU002586/1-843 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000353826/1-959 SAGAGEGPVI TALTPMTIPD VFPHLPLIAI TRNPVFPRFI KIIEVKNKKL ENSBTAP00000002350/1-961 SAGGGEGPVI TALTPMMIPD VFPHLPLIAV TRNPVFPRFI KIVEVKNKKL ENSTTRP00000012901/1-956 SAGGGEGPVI TALTPMMIPD VFPHLPLIAV TRNPVFPRFI KIVEVKNKKL bmy_06935T0/1-880 SAGGGEGPVI TALTPMMIPD VFPHLPLIAV TRNPVFPRFI KIVEVKNKKL BACU002586/1-843 ---------- -----MMIPD VFPHLPLIAV TRNPVFPRFI KIVEVKNKKL 151 200 ENSP00000353826/1-959 VELLRRKVRL AQPYVGVFLK RDDSNESDVV ESLDEIYHTG TFAQIHEMQD ENSBTAP00000002350/1-961 VELLRRKVRL AQPYAGVFLK KDDNNESDVV ENLDEIYHTG TFVQIHEMQD ENSTTRP00000012901/1-956 VELLRRKVRL AQPYAGVFLK KDDNNESDVV ESLDEIYHTG TFVQIHEMQD bmy_06935T0/1-880 VELLRRKVRL AQPYAGVFLK KDDNNESDVV ESLDEIYHTG TFVQIHEMQD BACU002586/1-843 VELLRRKVRL AQPYAGVFLK KDDNNESDVV ESLDEIYHTG TFVQIHEMQD 201 250 ENSP00000353826/1-959 LGDKLRMIVM GHRRVHISRQ LEVEPEEPEA ENKHKPRRKS KRGKKEAEDE ENSBTAP00000002350/1-961 LGDKLRMIVM GHRRVHINRQ LEVEPEEPEG ENKQKLRKKP KRGKKEAEED ENSTTRP00000012901/1-956 LGDKLRMIVM GHRRVHINRQ LEVEPEEPEG ENRQKLRRKP KRGKKDAEED bmy_06935T0/1-880 LGDKLRMIVM GHRRVHINRQ LEVEPEEPEG ENKQKLRRKL KRGKKDAEED BACU002586/1-843 LGDKLRMIVM GHRRVHINRQ LEVEPEEPEG ENKQKLRRKL KRGKKDAEED 251 300 ENSP00000353826/1-959 LSARHPAELA MEPTPELPAE VLMVEVENVV HEDFQVTEEV KALTAEIVKT ENSBTAP00000002350/1-961 GATKRPLEVV VGPGPSPAGE VLMVEVENVA HEDFQVTEEV KALTAEIVKT ENSTTRP00000012901/1-956 GGAKRQLQVV MEPEPSPAGE VLMVEVENV- HED-QVTEEV KALTAEIVKT bmy_06935T0/1-880 GGAKRQVEVV TEPDPSPAGE VLMVEVENVA HEDFQVTEEV KALTAEIVKT BACU002586/1-843 GGAKRQVEVV MEPDPSPAGE VLMVEVENVA HEDFQVTEEV KALTAEIVKT 301 350 ENSP00000353826/1-959 IRDIIALNPL YRESVLQMMQ AGQRVVDNPI YLSDMGAALT GAESHELQDV ENSBTAP00000002350/1-961 IRDIIALNPL YRESVLQMMQ AGHRVVDNPI YLSDMGAALT GAESHELQEV ENSTTRP00000012901/1-956 IRDIIALNPL YRESVLQMMQ AGHRVVDNPI YLSDMGAALT GAESHELQDV bmy_06935T0/1-880 IRDIIALNPL YRESVLQMMQ AGHRVVDNPI YLSDMGAALT GAESHELQDV BACU002586/1-843 IRDIIALNPL YRESVLQMMQ AGHRVVDNPI YLSDMGAAPT GAESHELQDV 351 400 ENSP00000353826/1-959 LEETNIPKRL YKALSLLKKE FELSKLQQRL GREVEEKIKQ THRKYLLQEQ ENSBTAP00000002350/1-961 LEETNIPKRL YKALSLLKKE FELSKLQQRL GREVEEKIKQ THRKYLLQEQ ENSTTRP00000012901/1-956 LEETNIPKRL YKALSLLKKE FELSKLQQRL GREVEEKIKQ THRKYLLQEQ bmy_06935T0/1-880 LEETNIPKRL YKALSLLKKE FELSKLQQRL GREVEEKIKQ THRKYLLQEQ BACU002586/1-843 LEETNIPKRL YKALSLLKKE FELSKLQQRL GREVEEKIKQ THRKYLLQEQ 401 450 ENSP00000353826/1-959 LKIIKKELGL EKDDKDAIEE KFRERLKELV VPKHVMDVVD EELSKLGLLD ENSBTAP00000002350/1-961 LKIIKKELGL EKDDKDAIEE KFRERLKELV VPKHVMDVVD EELSKLGLLD ENSTTRP00000012901/1-956 LKIIKKELGL EKDDKDAIEE KFRERLKELV VPRHVMDVVD EELSKLGLLD bmy_06935T0/1-880 LKIIKKELGL EKDDKDAIEE KFRERLRELV VPKHVMDVVD EELSKLGLLD BACU002586/1-843 LKIIKKELGL EKDDKDAIEE KFRERLKELV VPKHVMDVVD EELSKLGLLD 451 500 ENSP00000353826/1-959 NHSSEFNVTR NYLDWLTSIP WGKYSNENLD LARAQAVLEE DHYGMEDVKK ENSBTAP00000002350/1-961 NHSSEFNVTR NYLDWLTSIP WGKHSDENLD LARAQAVLEE DHYGMEDVKK ENSTTRP00000012901/1-956 NHSSEFNVTR NYLDWLTSIP WGKYSDENLD LSRAQAVLEE DHYGMEDVKK bmy_06935T0/1-880 NHSSEFNVTR NYLDWLTSIP WGKYSDENLD LSRAQAVLEE DHYGMEDVKK BACU002586/1-843 NHSSEFNVTR NYLDWLTSIP WGKYSNENLD LSRAQAVLEE DHYGMEDVKK 501 550 ENSP00000353826/1-959 RILEFIAVSQ LRGSTQGKIL CFYGPPGVGK TSIARSIARA LNREYFRFSV ENSBTAP00000002350/1-961 RILEFIAVSQ LRGSTQGKIL CFYGPPGVGK TSIARSIARA LNREYFRFSV ENSTTRP00000012901/1-956 RILEFIAVSQ LRASTQGKIL CFYGPPGVGK TSIARSIARA LNREYFRFSV bmy_06935T0/1-880 RILEFIAVSQ LRASTQGKIL CFYGPPGVGK TSIARSIARA LNREYFRFSV BACU002586/1-843 RILEFIAVSQ LRASTQGKIL CFYGPPGVGK TSIARSIARA LNREYFRFSV 551 600 ENSP00000353826/1-959 GGMTDVAEIK GHRRTYVGAM PGKIIQCLKK TKTENPLILI DEVDKIGRGY ENSBTAP00000002350/1-961 GGMTDVAEIK GHRRTYVGAM PGKIIQCLKK TKTENPLVLI DEVDKIGRGY ENSTTRP00000012901/1-956 GGMTDVAEIK GHRRTYVGAM PGKIIQCLKK TKTENPLVLI DEVDKIGRGY bmy_06935T0/1-880 GGMTDVAEIK GHRRTYVGAM PGKIIQCLKK TKTENPLVLI DEVDKIGRGY BACU002586/1-843 GGMTDVAEIK GHRRTYVGAM PGKIIQCLKK TKTENPLVLI DEVDKIGRGY 601 650 ENSP00000353826/1-959 QGDPSSALLE LLDPEQNANF LDHYLDVPVD LSKVLFICTA NVTDTIPEPL ENSBTAP00000002350/1-961 QGDPSSALLE LLDPEQNANF LDHYLDVPVD LSKVLFICTA NITETIPEPL ENSTTRP00000012901/1-956 QGDPSSALLE LLDPEQNANF LDHYLDVPVD LSKVLFICTA NITETIPEPL bmy_06935T0/1-880 QGDPSSALLE LLDPEQNANF LDHYLDVPVD LSKVLFICTA NITETIPEPL BACU002586/1-843 QGDPSSALLE LLDPEQNANF LDHYLDVPVD LSKVLFICTA NITETIPEPL 651 700 ENSP00000353826/1-959 RDRMEMINVS GYVAQEKLAI AERYLVPQAR ALCGLDESKA KLSSDVLTLL ENSBTAP00000002350/1-961 RDRMEMINVS GYVAQEKLAI AERYLVPQAR ALCGLDESKA KLSSDVLTLL ENSTTRP00000012901/1-956 RDRMEMINVS GYVAQEKLAI AEQYLVPQAR AQCGLDESKA TLSSDVLTLL bmy_06935T0/1-880 RDRMEMINVS GYVAQEKLAI AEQYLVPQAR AQCGLDESKA TLSSDVLTLL BACU002586/1-843 RDRMEMINVS GYVAQEKLAI AEQYLVPQAR AQCGLDESKA TLSSDVLTLL 701 750 ENSP00000353826/1-959 IKQYCRESGV RNLQKQVEKV LRKSAYKIVS GEAESVEVTP ENLQDFVGKP ENSBTAP00000002350/1-961 IKQYCRESGV RNLQKQVEKV LRKSAYKIVS GEAEFVEVTP ENLQDFVGKP ENSTTRP00000012901/1-956 IKQYCRESGV RNLQKQVEKV LRKAAYKIVS GEAEFVEVTP ENLQDFVGKP bmy_06935T0/1-880 IKQYCRESGV RNLQKQVEKV LRKSAYKIVS GEAEFVEVTP ENLQDFVGKP BACU002586/1-843 IKQYCRESGV RNLQKQVEKV LRKSAYKIVS GEAEFVEVTP ENLQDFVGKP 751 800 ENSP00000353826/1-959 VFTVERMYDV TPPGVVMGLA WTAMGGSTLF VETSLRRPQD KD-AKGDKDG ENSBTAP00000002350/1-961 VFTVERMYDV TPPGVVMGLA WTAMGGSTLF VETSLRRPRD RDSDKGDKDG ENSTTRP00000012901/1-956 VFTVERMYDM TPPGVAMGLA WTAMGGSTLF VETSLRRPRD ---SKGDKDG bmy_06935T0/1-880 VFTVERMYDV TPPGVAMGLA WTAMGGSTLF VETSLRRPRD ---SKGDKDG BACU002586/1-843 VFTVERMYDV TPPGVAMGLA WTAMGGSTLF VETSLRRPRD ---SKGDKDG 801 850 ENSP00000353826/1-959 SLEVTGQLGE VMKESARIAY TFARAFLMQH APANDYLVTS HIHLHVPEGA ENSBTAP00000002350/1-961 SLEVTGQLGE VMKESARIAY TFARAFLMQH DSANKFLVTS HIHLHVPEGA ENSTTRP00000012901/1-956 SLEVTGQLGE VMKESARIAY TFARAFLMQY DPTNEYLVTS HIHLHVPEGA bmy_06935T0/1-880 SLEVTGQLGE VMKESARIAY TFARSFLMQY DPTNAYLVTS HIHLHVPEGA BACU002586/1-843 SLEVTGQLGE VMKESARIAY TFARAFLMQY NPTNEYLVTS HIHLHVPEGA 851 900 ENSP00000353826/1-959 TPKDGPSAGC TIVTALLSLA MGRPVRQNLA MTGEVSLTGK ILPVGGIKEK ENSBTAP00000002350/1-961 TPKDGPSAGC TIVTALLSLA LDRPVRQNLA MTGEVSLTGK VLPVGGIKEK ENSTTRP00000012901/1-956 TPKDGPSAGC TIVTALLSLA LDRPVRQNLA MTGEVSLTGK VLPVGGIKEK bmy_06935T0/1-880 TPKDGPSAGC TIVTALLSLA LGRPVRQNLA MTGEVSLTGK VLPVGGIKEK BACU002586/1-843 TPKDGPSAGC TIVTALLSLA LGQPVRQNLA MTGEVSLTGK VLPVGGIKEK 901 950 ENSP00000353826/1-959 TIAAKRAGVT CIVLPAENKK DFYDLAAFIT EGLEVHFVEH YREIFDIAFP ENSBTAP00000002350/1-961 TIAAKRAGVT CIVLPAENKK DFYDLAAFIT EGLEVHFVEH YREIFDIAFP ENSTTRP00000012901/1-956 TIAAKRAGVT CIILPTENKK DFYDLAAFIT EGLEVHFVEH YREIFNIAFP bmy_06935T0/1-880 TIAAKRAGVT CIILPSENKK DFYDLAAFIT EGLEVHFVEH YREIFNIAFP BACU002586/1-843 TIAAKRAGVT CIILPTENKK DFYDLAAFIT EGLEVHFVEH YREIFNIAFP 951 1000 ENSP00000353826/1-959 DEQAEALAVE R ENSBTAP00000002350/1-961 EERAEALAVE R ENSTTRP00000012901/1-956 EEQAEALAVE R bmy_06935T0/1-880 EEQAEALAVE R BACU002586/1-843 EEQAKALAVE R