KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:21 2014 Check: 00 .. Name: ENSP00000371037/1-798 Len: 802 Check: 9848 Weight: 1.00 Name: ENSBTAP00000002352/1-781 Len: 802 Check: 2928 Weight: 1.00 Name: ENSTTRP00000012903/1-790 Len: 802 Check: 4897 Weight: 1.00 Name: BACU002585/1-711 Len: 802 Check: 5238 Weight: 1.00 Name: bmy_06934T0/1-479 Len: 802 Check: 515 Weight: 1.00 // 1 50 ENSP00000371037/1-798 MLMLMLVAAV TMWLRPLVTA Q-LCRSRTVR TGKVFNLIQD VQGDRLYFHP ENSBTAP00000002352/1-781 MLVLMLVVAT TFRLCPLVKA RPLCRIRTLR TGKVFPVEEK IQGDRLYFSS ENSTTRP00000012903/1-790 MLLLMLVAAT TLRLCPLARA QPLCRIRTVR TGKVFHVREQ IQGDHLYFSS BACU002585/1-711 ---------- ---------- ---MYGKKKK RPPVF----- ---------- bmy_06934T0/1-479 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000371037/1-798 TTTRLIKHPC EKNIALYLGK QVFFTMDNFE TSLLPFTIPT SMQVGVPEVT ENSBTAP00000002352/1-781 GKTHLIKHPC KKNLALYLGR QIFLTKDTFE SSLIPFSIPT SMQVGTPEVT ENSTTRP00000012903/1-790 GTTRLMKHPC KKNIALYLGR QVFLTKNSFE SSVLPFSIPT SMQVGIPEVT BACU002585/1-711 ---------- ---------- --FVWDNSLD EASLQEKHSP VSRVGIPEVT bmy_06934T0/1-479 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000371037/1-798 SAHFAGSLLL LVVDQKVYIY DYENNSWSMS LGIKHPVTHV SGDNCCYTGS ENSBTAP00000002352/1-781 SAHFAGSVLL LVVNQKVYVY DYEANFWTAS TGIQHPVSHV SGDNCCYSGN ENSTTRP00000012903/1-790 SAHFAGSVLL LVVNRKVYVY DYEANSWNAS TGVEHPVSHI SGDNCCYSGN BACU002585/1-711 SAHFAGSVLL LVVNRKVYVY DYEANSWNAS TGVEHPVSHI SGDNCCYSGN bmy_06934T0/1-479 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000371037/1-798 LFCVHVSNLV FAYFRGDQIS QTYIYYSNTG GFSFWKYHYD RQAEIIGSLG ENSBTAP00000002352/1-781 SFCMDISNSV FAYLRGDQVS QANIYFSNSR GYRFQKYTQE RRAELVGTFG ENSTTRP00000012903/1-790 SFCMDISNSV FAYLRGDQIS QANIYFSNTR GYRFQKYSQE RQAELVGSLG BACU002585/1-711 SFCMDISNSV FAYLHGDQIS QANIYFSNTR GYRFQKYAQE RQAELVGSLG bmy_06934T0/1-479 ---------- --------IS QANIYFSNTR GYRFQKYAQE RQAELVGSLG 201 250 ENSP00000371037/1-798 GIFHFFSLSQ VAMLVVNQGK GMFKYSDHPL NRSFGLSFDY NGTLDILIAP ENSBTAP00000002352/1-781 GIFSFHSLSQ VGLLLVDEQM AMFSYSDHPL NRSFGLPFDY DRALDILIAP ENSTTRP00000012903/1-790 GIFYFYSLSQ VGLLLVDQRK AMFGYSDHPL NRSFGLPFDY NGTLDILIAP BACU002585/1-711 GIFYFYSLSQ VGLLLVDQRK AMFGYSDHPL NRSFGLPFDY NGTLDVLIAP bmy_06934T0/1-479 GIFYFYSLSQ VGLLLVDQRK AMFGYSDHPL NRSFGLPFDY NGTLDVLIAP 251 300 ENSP00000371037/1-798 GQRGILLLWF ENSLLFSHNA GQLVDTVRVK KGDQTLFSSI FEAKITIHNI ENSBTAP00000002352/1-781 GQKGILIFWS EKNLLVSRNS GQLVESVQVR EGQRILYNSI VKANVTIHSV ENSTTRP00000012903/1-790 GQKGILIFWF EKSLLISRNA GQLVNPVHVR EGQHILYSSI SEANITIHSV BACU002585/1-711 GQKGILIFWF EKSLLVSRNA GQLVNPVQVR EGQHILYSSI SEANITIHSV bmy_06934T0/1-479 GQKGILIFWF EKSLLVSRNA GQLVNPVQVR EGQHILYSSI FEANITIHSV 301 350 ENSP00000371037/1-798 AVTENELAVI TREDNLYYGN LGIVPSSIIK FADQYIWSED VALMFRSPGT ENSBTAP00000002352/1-781 AANENELAVL TEENNLYYGS LGIQSSSLIK FADQNIWSQE AVLMFTDVGM ENSTTRP00000012903/1-790 AANENELAVL TQENNLYYGS LGILSSSLIK FADQNIWSEE AVLMFTDVGM BACU002585/1-711 AANENELAVL TQENHLYYGS LGILSSSLIK -VDQNIWSKE AVLMFTDVGM bmy_06934T0/1-479 AANENELAVL TRENHLYYGS LGILSSSLIK FADQNIWSEE AVLMFTDVGM 351 400 ENSP00000371037/1-798 LEILTPLRDT AFPAFDFQKC LVNIQALLMD PELHVGKCKI EFLTGEFIYR ENSBTAP00000002352/1-781 LEILTPLRDV LFPAFDFQKC RLNIQALLMD PQLQAGVCKV ELLQGEFENK ENSTTRP00000012903/1-790 LEILSPLPDS TSPAFDFQKC PVNIQAILMD PQLQVDVCKV ELLQGEFENK BACU002585/1-711 LEILTLLPDS ISPAFDFQKC PVNIQAILMD PQLQVDVCKV ELLQGEFENK bmy_06934T0/1-479 LEILTPLPDS TFPAFDFQKC PVNIQAILMD PQLQVDVCNV ELLQGEFENK 401 450 ENSP00000371037/1-798 MYTIDMHSQL ELTASLIPQP GTSLIPLVMV SNPHSLGFQA TFYENGYTSD ENSBTAP00000002352/1-781 MYTIDMNSQL ELTALMIPRP GMLPVPLVSV SNPHSLGLQA VICEDGYTYD ENSTTRP00000012903/1-790 MYTIDMNSEL ELTALMIPRP STSPVPLVMV SNPHSLGLQA VIYEDGYTYD BACU002585/1-711 MYTIDMNSEL ELTALMIPRP STSPVPLVMV SNPHSLGLQA VIYEDGHTYD bmy_06934T0/1-479 MYTIDMNSEL ELTALMIPRP STSPVPL--- ---------A VIYEDGYTYD 451 500 ENSP00000371037/1-798 GNTKYKLDIF LKQQQHWGRT DSNFTSSLKK ATMSTLTVDI ANKEISCVDI ENSBTAP00000002352/1-781 GNTKHRLNIS LKQQHHWGRA DPNFTSSIKR PTISTITLDI ANKEISCVDL ENSTTRP00000012903/1-790 GNTKHRLNIS LRQQQHWGRA DPNFTSSIKR PTISTITLDI ANKEISCLDL BACU002585/1-711 GNTKHRLNIS LRQQQHWGRA DPNFTSSIKR PTISTITLDI ANKEISCLDL bmy_06934T0/1-479 GNTKHRLNIS LRQQQHWGRA DPNFTSSIKR PTISTITLDI ANKEISCLDL 501 550 ENSP00000371037/1-798 KPLSTLISVG CDLDKKIVIQ NKVSACSMGI LDPLTLQDNY SFIIEKEFYD ENSBTAP00000002352/1-781 KPLTALISVG CDLEKKIVIQ NELSACYHGV LDPVALQDNY SYIIEREAYD ENSTTRP00000012903/1-790 KPLTALISVG CDLEKKIVIQ NEISACYNGI LDPVALQDNY SYVIEREAYD BACU002585/1-711 KPLTALISVG CDLEKKIVIQ NEISACYNGV LDPVALQDNY SYIIEREAYD bmy_06934T0/1-479 KPLTALISVG CDLEKKIVIQ NEISACYNGV LDPVALQDNY SYVIER---- 551 600 ENSP00000371037/1-798 PGFQGQQSSE DLHVFYSYQQ LGCPLLVYYD TLWKPVVELW RKDSFQEVID ENSBTAP00000002352/1-781 PNFQGQQAKK DLEVHYPYEK LGCPLLAYYD IPWKPVVELW REGKFQEVVE ENSTTRP00000012903/1-790 PSFRGQKATE DLEVPYHYEK LGCPILVYYD TPWKPVVELW REGKFQEVVK BACU002585/1-711 PNFRGQKATE DLEVPYHYEK LGCPLLVYYD TPWKPVVELW REGKFQEVVE bmy_06934T0/1-479 ---------- ---------- ---------- ---------W REGKFQEVVE 601 650 ENSP00000371037/1-798 AEYVLLEVNG QFSYSYSLTA QSAMCTSQPQ NWTTMIKEFG --GPFFWNRE ENSBTAP00000002352/1-781 AEYVLLEMNG LFTYTYSLTA STAGCSAQPQ NWTTITKMAG DTAPFSWDRE ENSTTRP00000012903/1-790 AEYVLLEVNG LFTYTYSLTA DMALCSSQPQ NWTTIAKTAG DKGPFAWDRE BACU002585/1-711 AEYVLLEVNG LFTYTYSLTA DMALCSSQPQ NWTTIAKTAG DKGPFAWDRE bmy_06934T0/1-479 AEYVLLEVNG LFTYTYSLTA DMALCSSQPQ NWTTIAKTAG DKGPFAWDRE 651 700 ENSP00000371037/1-798 NYVSCHDPNN NAPLRWPDVQ YQILGGRTAN QIIFGH-NGF YVFYISIVDP ENSBTAP00000002352/1-781 NYISCHDPNY HEPLRWPDVP YQILGGQTEN KVVFDQRNGI YIFFISIVDP ENSTTRP00000012903/1-790 NYVSCHDPNN NAPLRWPKVP YQILGGPTEN KVVFDQRNGI YIFFISIVDP BACU002585/1-711 NYVSCHDPNN NAPLRWPEVP YQILGGPTEN KVVFDQRNGI YIFFISIVDP bmy_06934T0/1-479 NYVSCHDPNN NAPLRWPEVP YQILGGPTEN KVVFDQRNGI YIFFISIVDP 701 750 ENSP00000371037/1-798 YYSYCQLETI FSIYVYGAFP VQLVSAGVVI LLIISSILGS VWLAYKTPKL ENSBTAP00000002352/1-781 SYSYCRLETT FSVYVYGAFP LSIFPPEITI VLLTAATLLS IWLAYMIPQL ENSTTRP00000012903/1-790 YYSYCHLETT FSVYVYGAFP LPIFPPEITI VLLTGATLLS VWLAYLIPEL BACU002585/1-711 YYSYCHLETT FSVYVYGAFP LPIFPPEITI VLLTGATLLS VWLAYMIPKL bmy_06934T0/1-479 YY-------- ---------- ---------- ---------- ---------- 751 800 ENSP00000371037/1-798 LRTARGRRIK KCATQLCRRC KTVCQFRASA TARAGTEPPG RHRTPHGGRS ENSBTAP00000002352/1-781 LHTEQGLEGN GFWVRLYQRC RKSCACLWGR C--------- ---------- ENSTTRP00000012903/1-790 LHTERGLRVK GFWARLRRRC GKSCACVWAR CARPGRGGGG ---------- BACU002585/1-711 LHTEQGLRVK GFWVKRTHPT VI-------- ---------- ---------- bmy_06934T0/1-479 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000371037/1-798 DH ENSBTAP00000002352/1-781 -- ENSTTRP00000012903/1-790 -- BACU002585/1-711 -- bmy_06934T0/1-479 --