KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:25 2014 Check: 00 .. Name: ENSP00000269701/1-692 Len: 694 Check: 501 Weight: 1.00 Name: ENSBTAP00000002363/1-683 Len: 694 Check: 7885 Weight: 1.00 Name: ENSTTRP00000015162/1-683 Len: 694 Check: 4001 Weight: 1.00 Name: bmy_19197T0/1-691 Len: 694 Check: 1107 Weight: 1.00 Name: BACU004860/1-618 Len: 694 Check: 2944 Weight: 1.00 // 1 50 ENSP00000269701/1-692 MDQGYGGYGA WSAGPANTQG AYGTGVASWQ GYENYNYYGA QNTSVTTGAT ENSBTAP00000002363/1-683 MDQGYGGYGA WSAGPTNTQG TYGTGVASWQ GYENYNYYGA QNTSVTTGAT ENSTTRP00000015162/1-683 -------YGA WSAGPTNTHR AYGTGVASWQ GYENYNYYGA QNTSVTTGAT bmy_19197T0/1-691 MEQGYGGYGA WSAGPTNTQG AYGTGVASWQ GYENYNYYGA QNTSVTTGAT BACU004860/1-618 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000269701/1-692 YSYGPASWEA AKANDGGLAA GAPAMHMASY GPEPCTDNSD SLIAKINQRL ENSBTAP00000002363/1-683 YSYGPASWEA TKASD-GLAP GGPAMHMASY GPEPCTDSSD SLIAKINQRL ENSTTRP00000015162/1-683 YSYGPASWEA TNASD-G-AP GGPAMHMASY GPXXXXXXXX XHIAKINQRL bmy_19197T0/1-691 YSYGPASWEA TKASD-GLAP GGPAMHMASY GPEPCTDNSD SLIAKINQRL BACU004860/1-618 ---------- ---------- ----MHMASY GPEPCTDNSD SLIAKINQRL 101 150 ENSP00000269701/1-692 DMMSKEGGRG GSGGGGEGIQ DRESSFRFQP FESYDSRPCL PEHNPYRPSY ENSBTAP00000002363/1-683 DMMSKEGGRG GSSSGGEGMQ DRESSFRFQS FESYDSRPCL PEHNPYRPSY ENSTTRP00000015162/1-683 DMMSKEGGMG GSSGSGEGMQ DRESSFRFQS FESYDSRPCL PEHNPYRPSY bmy_19197T0/1-691 DMMSKEGGRG GSSGNGEGMQ DRESSFRFQS FESYDSRPCL PEHNPYRPSY BACU004860/1-618 DMMSKEGGRG GSSGNGEGMQ DRESSFRFQS FESYDSRPCL PEHNPYRPSY 151 200 ENSP00000269701/1-692 SYDYEFDLGS DRNGSFGGQY SECRDPARER GSLDGFMRGR GQGRFQDRSN ENSBTAP00000002363/1-683 SYDYDFDLGP NRNGGFGGQY SDCRDPTRER GSLDGFMRGR GQGRFQDRSN ENSTTRP00000015162/1-683 SYDYDFDLGP DRNGGFGGQY SDCRDPARER GSLDDFMRGR GQGRFQDRSN bmy_19197T0/1-691 SYDYDFDLGP DRNGGFGGQY SDCRDPARER GSLDDFMRGR GQGRFQDRSN BACU004860/1-618 SYDYDFDLGP DRNGGFGGQY SDCRDPARER GSLDDFMRGR GQGRFQDRSN 201 250 ENSP00000269701/1-692 PGTFMRSDPF VPPAASSEPL STPWNELNYV GGRGLGGPSP SRPPPSLFSQ ENSBTAP00000002363/1-683 PSTFMRSDPF MPPAAASEPL STPWTEMNYV GGRGLGGPSP SRPPPSLFSQ ENSTTRP00000015162/1-683 PGTFMRSDPF MPPAASSEPL SAPWTEMNYV GGRGLGGPSA SRPPPSLFSQ bmy_19197T0/1-691 PGTFMRSDPF MPPAASSEPL SAPWTEMNYV GGRGLGGPSA SRPPPSLFSQ BACU004860/1-618 PGTFMRSDPF MPPAASSEPL SAPWTEMNYV GGRGLGGPST SRPPPSLFSQ 251 300 ENSP00000269701/1-692 SMAPDYGVMG MQGAGGYDST MPYGCGRSQP RMRDRDRPKR RGFDRFGPDG ENSBTAP00000002363/1-683 SMAPDFGMMG MQGAGGYDNS VPYGCGRSQT RI--RDQPRR RGFNRCGPES ENSTTRP00000015162/1-683 SMAPDFGVMG MQGAGGYDSS MPYGCGRSQT RM--RDRPRR REFDRCGPDS bmy_19197T0/1-691 SMAPDFGVMG MQGAGGYDSS MPYGCGRSQT RM--RDRPRR REFDRCGPDS BACU004860/1-618 SMAPDFGMMG MQGAGGYDSS MPYGCGRSQT RM--RDRPRR REFDRCGPDS 301 350 ENSP00000269701/1-692 TGRKRKQFQL YEEPDTKLAR VDSEGDFSEN DDAAGDFRSG DEEFKGEDEL ENSBTAP00000002363/1-683 LGRKRKQLQI YDEPDTKQAR ADSEGDFSEN DDGAGDFRSG DEEFRGEDES ENSTTRP00000015162/1-683 LGRKRKQLQI YDEPDTKQAR ADSEGDFSEN DDGAGDFRSG DEEFRGEDEF bmy_19197T0/1-691 LGRKRKQLQI YDEPDTKQAR ADSEGDFSEN DDGAGDFRSG DEEFRGEDEF BACU004860/1-618 LGRKRKQLQI YDEPDTKQAR ADSEGDFSEN DDGAGDFRSG DEEFRGEDEF 351 400 ENSP00000269701/1-692 CDSGRQRGEK EDEDEDVKKR REKQRRRDRT RDRAADRIQF ACSVCKFRSF ENSBTAP00000002363/1-683 FDSGRQRGEK DDEDDEVKKR REKQRRRDRM RDRAADRIQF ACSVCKFRSF ENSTTRP00000015162/1-683 FESGRQRGEK DDEDDEVKKR REKQRRRDRM RDRAADRIQF ACSVCKFRSF bmy_19197T0/1-691 FDSGRQRGEK DDEDDEVKKR REKQRRRDRM RDRAADRIQF ACSVCKFRSF BACU004860/1-618 FDSGRQRGEK DDEDDEVKKR REKQRRRDRM RDRAADRIQF ACSVCKFRSF 401 450 ENSP00000269701/1-692 DDEEIQKHLQ SKFHKETLRF ISTKLPDKTV EFLQEYIVNR NKKIEKRRQE ENSBTAP00000002363/1-683 EDEEIQKHLQ SKFHKETLRF ISTKLPDKTV EFLQEYIINR NKKIEKRRQE ENSTTRP00000015162/1-683 EDEEIQKHLQ SKFHKETLRF ISTKLPDKTV EFLQEYIVNR NKKIEKRRQE bmy_19197T0/1-691 EDEEIQKHLQ SKFHKETLRF ISTKLPDKTV EFLQEYIVNR NKKIEKRRQE BACU004860/1-618 EDEEIQKHLQ SKFHKETLRF ISTKLPDKTV EFLQEYIVNR NKKIEKRRQE 451 500 ENSP00000269701/1-692 LMEKETAKPK PDPFKGIGQE HFFKKIEAAH CLACDMLIPA QPQLLQRHLH ENSBTAP00000002363/1-683 LMEKESTKPK PDPFKGIGQE HFFKKIEAAH CLACDMLIPA QPQLLQRHLH ENSTTRP00000015162/1-683 LMEKETTKPK PDPFKGIGQE HFFKKIEAAH CLACDMLIPA QPQLLQRHLH bmy_19197T0/1-691 LMEKESTKPK PDPFKGIGQE HFFKKIEAAH CLACDMLIPA QPQLLQRHLH BACU004860/1-618 LMEKESTKPK PDPFKGIGQE HFFKKIEAAH CLACDMLIPA QPQLLQRHLH 501 550 ENSP00000269701/1-692 SVDHNHNRRL AAEQFKKTSL HVAKSVLNNR HIVKMLEKYL KGEDPFTSET ENSBTAP00000002363/1-683 SVDHNHNRRL AAEQFKKTSL HVAKSVLNNR HIVKMLEKYL KGEDPFTSEA ENSTTRP00000015162/1-683 SVDHNHNRRL AAEQFKKTSL HVAKSVLNNR HIVKMLEKYL KGEDPFTSEA bmy_19197T0/1-691 SVDHNHNRRL AAEQFKKTSL HVAKSVLNNR HIVKMLEKYL KGEDPFTSEA BACU004860/1-618 SVDHNHNRRL AAEQFKKTSL HVAKSVLNNR HIVKMLEKYL KGEDPFTSEA 551 600 ENSP00000269701/1-692 VDPEMEGDDN LGGEDKKETP EEVAADVLAE VITAAVRAVD GEGAPAPESS ENSBTAP00000002363/1-683 GDAEIEGDEP LGSEDKEETP EEVAAQVLAE VVTAAVRAVD GEDAPAPESG ENSTTRP00000015162/1-683 VDPEIEGDDN LGGEDKEETP EEVAAEVLAE VITAAVRAVD GEGAPTPKSS bmy_19197T0/1-691 VDPEIEGDDN LGSEDKEETP EEVAAEVLAE VITAAVRAVD GEGAPTPESS BACU004860/1-618 VDAEIEGDDN LGGEDKEETP EEVAAEVLAE VITAAVRAVD GEGAPTPESS 601 650 ENSP00000269701/1-692 GEPAEDEGPT DTAEAGSDPQ AEQLLEEQVP CGTAHEKGVP KARS--EAAE ENSBTAP00000002363/1-683 EMLAERDGPT DTAEATSSPY P----EAETP CRVAPGKGST DGEAAGEAAE ENSTTRP00000015162/1-683 EMLAQEEGPM DTAETTSGPH PGEQLEAEAP CGMAPEKGNT EAEAGGEAAE bmy_19197T0/1-691 EMLAEGEGLT DTAETTSGPH PGELLEAEAP CGMAPEKGNT EAEAGGEAAE BACU004860/1-618 EMLAEVEGPT DTAETTSGPH PGELLEAEAP CGMAPEKGNT EAEAGGEAAE 651 700 ENSP00000269701/1-692 AGNGAETMAA EAESAQTRVA PAPAAADAEV EQTDAESKDA VPTE ENSBTAP00000002363/1-683 AGVEVEAMAA ESESTVTAT- ---AAAEATV EQTDAESKDA VPTE ENSTTRP00000015162/1-683 AGGEAEALAA ESEGTLTVTA PVQAAAEAEV EQTDAESKDT IPTE bmy_19197T0/1-691 AGGEVETLAA ESESTLTITA PVQAAAEAEV EQTDAESKDA IPTE BACU004860/1-618 AGGEVETLTA ESESTLTITA PVQAAAEAEV EQTDAESKDA LPTE