KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:27 2014 Check: 00 .. Name: ENSP00000358374/1-1463 Len: 1466 Check: 7318 Weight: 1.00 Name: ENSBTAP00000002366/1-1453 Len: 1466 Check: 3814 Weight: 1.00 Name: ENSTTRP00000004412/1-1446 Len: 1466 Check: 218 Weight: 1.00 Name: bmy_09835T0/1-1257 Len: 1466 Check: 9513 Weight: 1.00 Name: BACU007951/1-1420 Len: 1466 Check: 54 Weight: 1.00 // 1 50 ENSP00000358374/1-1463 MKKKTVCTLN MGDKKYEDME GEENGDNTIS TGLLYSEADR CPICLNCLLE ENSBTAP00000002366/1-1453 MKKKTIYTLN VGDQDYEDMQ GEENKDNTAT TGVLYSEADR CPICLSCLLE ENSTTRP00000004412/1-1446 MKKKTLYTLN V--------X GEENKDNTAT IGLLYSEADR CPICLSCLLE bmy_09835T0/1-1257 ---------- ---------- ---------- ---------- ---------- BACU007951/1-1420 MKKKTLYTLN VGDQDYEDME GEENKDNTAT TGLLYSEADR CPICLSCLLE 51 100 ENSP00000358374/1-1463 KEVGFPESCN HVFCMTCILK WAETLASCPI DRKPFQAVFK FSALEGYVKV ENSBTAP00000002366/1-1453 KEIGFPESCN HVFCLTCILK WAETLPSCPI DRKPFQAVVK FSVSEGCVKV ENSTTRP00000004412/1-1446 KEIGFPESCN HVFCLTCILK WAETLASCPI DRKPFQAVFK FSALEGCVKV bmy_09835T0/1-1257 ---------- ---------- ---------- ---------- ---------- BACU007951/1-1420 KEIGFPESCN HVFCLTCILK WAETLASCPI DRKPFQAVFK FSALESCVKV 101 150 ENSP00000358374/1-1463 QVKKQLRETK DKKNENSFEK QVSCHENSKS CIRRKAIVRE DLLSAKVCDL ENSBTAP00000002366/1-1453 QVKRQLRETK DKKNESSFKK QLSCQENSKS CMRKK-IIGE DLLSVKFYDL ENSTTRP00000004412/1-1446 HIKRQLRETN DKKIESSFKK QLSCQENSKS CMRKK-VKRE DLLSAKLYDL bmy_09835T0/1-1257 ---------- ---------- ---------- ---------- ---------- BACU007951/1-1420 HIKRQLRETN DKKNESSFKK QLSCQENSKS CMRKK-VKRE DLLSAKLYDL 151 200 ENSP00000358374/1-1463 KWIHRNSLYS ETGGKKNAAI KINKPQRSNW STNQCFRNFF SNMFSSVSHS ENSBTAP00000002366/1-1453 KMIHRNSKYS EMGGKKNSII KTNKPRRSNP YTNQCFRNFF SNVFSSSSHT ENSTTRP00000004412/1-1446 KMIYRNSKHS EMGGKENAII KTNKPQRSNP CTNQCFRNFF SNIFSSSSHT bmy_09835T0/1-1257 ---------- ---------- ----PQRSNP CTNQCFRNFF SSIFSSSSHT BACU007951/1-1420 KMIYRNSKYS EMGGKENAII KTNKPQRSNP CTNQCFRNFF SSIFSSSSHT 201 250 ENSP00000358374/1-1463 GESSFTYRAY CTEFIEASEI SALIRQKRHE LELSWFPDTL PGIGRIGFIP ENSBTAP00000002366/1-1453 GESSFSRTAY CTEFIEVNEI SALIRQKRQE LELSWFPDTL PGIGRISFIP ENSTTRP00000004412/1-1446 GESAFTSTAY CTEFIEVNEI SALIRQKRQE LELSWFPDTL PGIGRISFIP bmy_09835T0/1-1257 GESSFTCTAY RTEFIEVNEI SALIRQKRQE LELSWFPDTL PGIGRISFIP BACU007951/1-1420 GESSFTCTAY RTEFIEVNEI SALIRQKRQE LELSWFPDTL PGIGRISFIP 251 300 ENSP00000358374/1-1463 WNVETEVLPL I-SSVLPRTI FPTSTISFEH FGTSCKGYAL AHTQEGEEKK ENSBTAP00000002366/1-1453 WNIEIEVLPL I-SSVLPRTI LPTSTISLEN FGTSCKGYTL AHTQEGEEKK ENSTTRP00000004412/1-1446 WNIETEVLPL ISSSVLPRTI FPTSTISLEN FGTSCKGYAL AHTQEGEEKK bmy_09835T0/1-1257 WNIETEVLPL I-SSVLPRTI FPTSTISLEN FGTSCKGYAL AHTQEGEEKK BACU007951/1-1420 WNIETEVLPL I-SSVLPRTI FPTSTISLEN FGTSCKGYAL AHTQEGEEKK 301 350 ENSP00000358374/1-1463 QTSGTSNTRG SRRKPAMTTP TRRSTRNTRA ETASQSQRSP ISDNSGCDAP ENSBTAP00000002366/1-1453 QTSGTSNTRG SRRKPAAATP TRRSTRNTRA EPVSQSQRSP VSNVSGCDAP ENSTTRP00000004412/1-1446 QTSGTSNTRG SRRKPAATPP TRRSTRNTRA EPVSQSQRSP VSNNSGCDAP bmy_09835T0/1-1257 QTSGTSSTRG SRRKPAATTP TRRSTRNTRA EPVTQSQRSP VSNNSGCDAP BACU007951/1-1420 QTSGTSSTRG SRRKPAATTP TRRSTRNTRA EPVSQSQRSP VSNNSGCDAP 351 400 ENSP00000358374/1-1463 GNSNPSLSVP SSAESEKQTR QAPKRKSVRR GRKPPLLKKK LRSSVAAPEK ENSBTAP00000002366/1-1453 DNNNPSVSVS SSGESEKQTR QAPKRKSVRR GRKLPLLKKK LRSSVPPPEK ENSTTRP00000004412/1-1446 DSNNPSVSVS SSGESEKQTR QAPKRKSVRR GRKLPLLKKK LRSSVPPPEK bmy_09835T0/1-1257 DS-------- ---ESEKQTR QAPKRKSVRR GRKLPLLKKK LRSSVPPPEK BACU007951/1-1420 DSNNPSVSVS SSGESEKQTR QAPKRKSVRR GRKLPLLKKK LRSSLPPPEK 401 450 ENSP00000358374/1-1463 SSSNDSVDEE TAESDTSPVL EKEHQPDVDS SNICTVQTHV ENQSANCLKS ENSBTAP00000002366/1-1453 SSSSDSVDEE VAEPDIPPEL EKEHQSDVES IN--TVQINI ESESANGLRS ENSTTRP00000004412/1-1446 SSSSDSVDEE IVESDIPPVL EKEHQSDVES SN--TVQINV ENESANGLRS bmy_09835T0/1-1257 SSSSDSVDEE IVESDIPPVL EKEHQSDVES SN--TVQINV ENESANGLRS BACU007951/1-1420 SSSSDSVDEE IVESDIPPVL EKEHQSDVES SN--TVQINV ENESANGLRS 451 500 ENSP00000358374/1-1463 CNEQIEESEK HTANYDTEER VGSSSSESCA QDLPVLVGEE GEVKKLENTG ENSBTAP00000002366/1-1453 CSEPLKESEE CTETHDTEER VETLHSESDT QDPPVLLGGE EEVQKVENTS ENSTTRP00000004412/1-1446 CGEPVEESEE HGETHDTEER VESVYSESGT QDPPVLVGEE EEIQKVENTG bmy_09835T0/1-1257 CSEPVQESEE HSETHDTEER VESLYSESGT QDPPVLVGEE EEIQKVENXG BACU007951/1-1420 CSEPVEESEE HSETRDTEER VESLYSESGT QDPPVLVGEE EEIQTVENTG 501 550 ENSP00000358374/1-1463 IEANVLCLES EISENILEKG GDPLEKQDQI SGLSQSEVKT DVCTVHLPND ENSBTAP00000002366/1-1453 IEANVLCLES EISASTSKKG SDPLENQDPI AEPSESEIKA DICIDHVLND ENSTTRP00000004412/1-1446 IEANMLCLES EISKNTSEKG GDPLENQDQI ALPSESEVKA DGCTDHLPND bmy_09835T0/1-1257 IEANILCLES EISKNTSDKG GDPLENQDQI ALPSESEVKA DGCTDHLPND BACU007951/1-1420 IEANILCLES EISKNTSEKG GDPLENQDQI ALPSESEVKA DGCTDHLPND 551 600 ENSP00000358374/1-1463 FPTCLTSESK VYQPVSCPLS DLSENVESVV NEEKITESSL VEITEHKDFT ENSBTAP00000002366/1-1453 SLTCSGSEIE VYQSASN-LC ELPENAEPIV NEEKVMESPI VKIIDPRDST ENSTTRP00000004412/1-1446 FLTCSGSEIE VHQPISS-LG EIPENAESAV NEDNFMGSPI VKIIDHKDST bmy_09835T0/1-1257 FLTCSGSEIE VHQPISS-LG EIPENAESAV NEEKVMESPI VKIIDHKDST BACU007951/1-1420 FLTCSGSEIE VHQPISS-LG EIPENAESAV NEEKVMESPI VKIIDHKDST 601 650 ENSP00000358374/1-1463 LKTEELIESP KLESSEGEII QTVDRQSVKS PEVQLLGHVE TEDVEIIATC ENSBTAP00000002366/1-1453 VKTEQLIDSP KLESSEGGVI QAVDTKSIES SEVLLLGHVE NEDAEIIATC ENSTTRP00000004412/1-1446 VKTEHLIDSP KLESSEGGII QTVDKKSIES SEVHLLGHVE NEDIEIIATC bmy_09835T0/1-1257 VKTEHLIDSP KLESSEGGII QTVDKKSIES SEVHLLGHVE NEDAEIIATC BACU007951/1-1420 VKTEHLIDSP KLESSEGGII QTVDKKSIES SEVHLLGHVE NEDAEVIATC 651 700 ENSP00000358374/1-1463 DTFGNEDFNN IQDSENNLLK NNLLNTKLEK SLEEKNESLT EHPRSTELPK ENSBTAP00000002366/1-1453 DTSGNETLSS IQDSENSLFK KN-LNTKLDK SLEEKTESLV EYPRSTELPK ENSTTRP00000004412/1-1446 DTSGNENFNS IQDSENNLLK KN-LNTKLDK SFEEKTESLV EHPRSTELPK bmy_09835T0/1-1257 DTSGNENFNS IQDSENNLLK KN-LNTKLDK SFEEKTXSLV EHPRSTELPK BACU007951/1-1420 DTSGNENFSS IQDSENNLLK KN-LNTKLDK SFEEKTESLV EHPRSTELPK 701 750 ENSP00000358374/1-1463 THIEQIQKHF SEDNNEMIPM ECDSFCSDQN ESEVEPSVNA DLKQMNENSV ENSBTAP00000002366/1-1453 THLALIQKHF SEDNNEMIPM ECDSFCSDQN ESEIEPSVNA DAKQVNENSV ENSTTRP00000004412/1-1446 THVALIQKHF SEDNNEMIPM ECDSFCSDQN ESELEPSVSA DAKQLNENSV bmy_09835T0/1-1257 THVALIQKHF SEDNNEMIPM ECDSFCSDQN ESELEPSVNA DAKQLNENSV BACU007951/1-1420 THVALIQKHF SEDNNEMIPM ECDSFCSDQN ESELEPSVNA DAKQLNENSV 751 800 ENSP00000358374/1-1463 THCSENNMPS SDLADEKVET VSQPSESPKD TIDKTKKPRT RRSRFHSPST ENSBTAP00000002366/1-1453 EHSSQKNMSS SDPANEKVET VSQPSENPVD ATDKAKKPRT RRSRFHSPST ENSTTRP00000004412/1-1446 EHSSQKNMSS SGPSNEKVET VSQPSEIPID TIDKAKKPRT RRSRFHSPST bmy_09835T0/1-1257 EHSSQKNMSS SGPSNEKVET VSQPSEIPID TIDKAKKPRT RRSRFHSPST BACU007951/1-1420 EHSSQKNMSS SGPSNEKVET VSQPSEIPID TIDKAKKPRT RRSRFHSPST 801 850 ENSP00000358374/1-1463 TWSPNKDTPQ EKKRPQSPSP RRETGKESRK SQSPSPKNES ARGRKKSRSQ ENSBTAP00000002366/1-1453 TWSPNKDTAR EKKRSQSPSP KRETGKDSRK SRSPSPKKES VRGRRKSRSQ ENSTTRP00000004412/1-1446 TWSPNKDTAR EKKRSQSPSP KRETGKESRK SRSPSPKKES ARGRRKSRSQ bmy_09835T0/1-1257 TWSPNKDTVR EKKRSQSPSP KRETGKESRK SRSPSPKKES ARGRRKSRSQ BACU007951/1-1420 TWSPNKDTAR EKKRSQSPSP KRETGKESRK SRSPSPKKES ARGRRKSRSQ 851 900 ENSP00000358374/1-1463 SPKKDIARER RQSQSRSPKR DTTRESRRSE SLSPRRETSR ENKRSQPRVK ENSBTAP00000002366/1-1453 SPKKDSARER RRSQSRSPKR DSAKEGKRSE SLSPK----R ENRRSQSRVK ENSTTRP00000004412/1-1446 SPKKD-PRER RKSQSRSPKR DSTREGKRSE SLSPKRDTSR ENRRSQSRLK bmy_09835T0/1-1257 SPKKD-PRER RKSQSRSPKR DSTREGKRSE SLSPKRDTSR ENRRSQSRLK BACU007951/1-1420 SPKKD-PRER RKSQSRSPKR DSTREGKRSE SLSPKRDTSR ENRRSQSRLK 901 950 ENSP00000358374/1-1463 DSSPGEKSRS QSRERESDRD GQR--RERER RTRKWSRSRS HSRSPSRCRT ENSBTAP00000002366/1-1453 DSSPREKSRS QSRERESDRD GSRRDRDRER RMRRWSRSRS RSRSPSRSRT ENSTTRP00000004412/1-1446 DSSPREKSRS RSRERESDRD GPKRDRDRER RTRRWSRSRS RSRSPSRSRT bmy_09835T0/1-1257 DSSPREKSRS RSRERESDRD GPKRDRDRER RTRRWSRSRS RSRSPSRSRT BACU007951/1-1420 DSSPREKSRS RSRERESDRD GPKRDRDRER RTRRWSRSRS RSRSPSRSRT 951 1000 ENSP00000358374/1-1463 KSKSSSFGRI DRDSYSPRWK GRWANDGWRC PRGNDRYRKN DPEKQNENTR ENSBTAP00000002366/1-1453 KSKGSSFGRN DRDSYSPRWK ERWANDGWRC PRGNDRYRKS DSEKQNENTR ENSTTRP00000004412/1-1446 KSKSSSFGRN DRVSYSPRWK ERWANDGWRC PRGNDRYRKN DSEKQNENTR bmy_09835T0/1-1257 KSKSSSFGRN DRVSYSPRWK ERWANDGWRC PRGNDRYRKN DSEKQNENTR BACU007951/1-1420 KSKSSSFGRN DRVSYSPRWK ERWTNDGWRC PRGNDRYRKN DSEKQNENTR 1001 1050 ENSP00000358374/1-1463 KEKNDIHLDA DDPNSADKHR NDCPNWITEK INSGPDPRTR NPEKLKESHW ENSBTAP00000002366/1-1453 KEKNDINTDA DDSNSADKHR NDCPTWVTEK INSGPDPRIR NPEKLKDSHW ENSTTRP00000004412/1-1446 KEKNDISPDA DDSDSADKHR NDCPSWVTEK INSGPDPRTR NPEKLKDSHW bmy_09835T0/1-1257 KEKNDISPDA DDSNSADKHR NDCPSWVTEK INSGPDPRTR NPEKLKDSHW BACU007951/1-1420 KEKNDISPDA DDSNSADKHR NDCPSWVTEK INSGPDPRTR NPEKLKDSHW 1051 1100 ENSP00000358374/1-1463 EENRNENSGN SWNKNFGSGW VSNRGRGRGN RGRGTYRSSF AYKDQNENRW ENSBTAP00000002366/1-1453 EENRNENSGN SWNKNFSSAW MSN--RGRGN RGRGNHRGGF AYTDQNENRW ENSTTRP00000004412/1-1446 EENRNENAGN SWNKNFGSGW MSN--RERGN RGRGAYKXXX XXXXXXXXXX bmy_09835T0/1-1257 EENRNENSGN SWNKNFGSGW MSN--RGRGN RGRGAYRGGF AYTDQNENRW BACU007951/1-1420 EENRNENSGN SWNKNFGSGW MSN--RGRGN RGRGAYRGGF AYTDQNENRW 1101 1150 ENSP00000358374/1-1463 QNRKPLSGNS NSSGSESFKF VEQQSYKRKS EQEFSFDTPA DRSGWTSASS ENSBTAP00000002366/1-1453 QNRKPLSGNS NSSGNETFKF VEQQPYKRKS EQEFSFDTPA DRSGWTSASS ENSTTRP00000004412/1-1446 PNRKPLSGNS NSSGETK--- VEQQPYKRKS EQEFS-DTPA DRSGWTSASS bmy_09835T0/1-1257 QNRKPLSGNS NSSGNETFKF VEQQPYKRKS EQEFSFDTPA DRSGWTSASS BACU007951/1-1420 QNRKPLSGNS NSSGNETFKF VEQQPYKRKS EQEFSFDTPA DRSGWTSASS 1151 1200 ENSP00000358374/1-1463 WAVRKTLPAD VQNYYSRRGR NSSGPQSGWM KQEEETSGQD SSLKDQTNQQ ENSBTAP00000002366/1-1453 WAVRKTLPAD VQNYYSRRGR SSSGPQSGWM RQDEETAEQE SNLKDQTNQQ ENSTTRP00000004412/1-1446 WAVRKTLPAD VQNYYSRRGR NSAGPQSAWM RQEEETTEQD SNLKDQTNQQ bmy_09835T0/1-1257 WAVRKTLPAD VQNYYSRRGR NSSGPQSGWM RQEEETTEQD SNLKDQTNQQ BACU007951/1-1420 WAVRKTLPAD VQNYYSRRGR NSSGPQSGWM RQEEETTEQD SNLKDQTNQQ 1201 1250 ENSP00000358374/1-1463 VDGSQLPINM MQPQMNVMQQ QMNAQHQPMN IFPYPVGVHA PLMNIQRNPF ENSBTAP00000002366/1-1453 GDGSQLPMNM MQPQMNAMQQ HMSA-HQPVN MFPYPVGVPA PLMNIQRSPF ENSTTRP00000004412/1-1446 GDGSQLPINM MQPQMNVMQQ QMNAQHQPMN IFPYPVGVHA PLMNLQRNPF bmy_09835T0/1-1257 GDGSQLPINM MQPQMNVMQQ QMNAQHQPMN IFPYPVGVHA PLMNLQRSPF BACU007951/1-1420 GDGSQLPINM MQPQMNVMQQ QMNAQHQPMN IFPYPVGVHA PLMNLQRSPF 1251 1300 ENSP00000358374/1-1463 NIHPQLPLHL HTGVPLMQVA TPTSVSQGLP PPPPPPPPSQ QVNYIASQPD ENSBTAP00000002366/1-1453 SIHPQLPLHL HTGVPLMQVA APGGVSQGLP PPPPPPPPSQ QVGYIASQPD ENSTTRP00000004412/1-1446 NIHPQLPLHL HTGVPLMQVA APTSVSQGPP PPPPPPPPSQ QVSYIASQPD bmy_09835T0/1-1257 NIHPQLPLHL HTGVPLMQVA APTSVSQGLP PPPPPPPPSQ QVSYIASQPD BACU007951/1-1420 NMHPQLPLHL HTGVPLM--- ---------- ---------- ---------- 1301 1350 ENSP00000358374/1-1463 GKQLQGIPSS SHVSNNMSTP VLPAPTAAPG NTGMVQGPSS GNTSSSSHSK ENSBTAP00000002366/1-1453 GKQLQGIPSA SHVSNNMSTP VLPAPTAAPG NMGTVQGPSS GNTASSSHSK ENSTTRP00000004412/1-1446 GKQLQGIPSA SHVSNNMSTP VLPAPTAAPG NVGTVQGPSS GNTSSSSHSR bmy_09835T0/1-1257 GRQLQGIPSA SHVSNNMSTP VLPAPTAAPG NMGTVQGPSS GNTSSSSHSR BACU007951/1-1420 ----QGIPSA SHVSNNMSTP VLPAPTAAPG NMGTVQGPSS GNTSSSSHSR 1351 1400 ENSP00000358374/1-1463 ASNAAVKLAE SKVSVAVEAS ADSSKTDKKL QIQEKAAQEV KLAIKPFYQN ENSBTAP00000002366/1-1453 ASNAAVKLAE SKVSVTVEAS ADSSKTDKKL QIQEKAAQEV KLAIKPFYQN ENSTTRP00000004412/1-1446 ASNAAVKLAE SKVSVTVEAS ADSSKTDKKL QIQEKAAQEV KLAIKPFYQN bmy_09835T0/1-1257 ASNAAVKLAE S--------- -------KKL QIQERAAQEV KLAIKPFYQN BACU007951/1-1420 ASNAAVKLAE SKVSVTVEAS ADSSKTDKKL QIQEKAAQEV KLAIKPFYQN 1401 1450 ENSP00000358374/1-1463 KDITKEEYKE IVRKAVDKVC HSKSGEVNST KVANLVKAYV DKYKYSRKGS ENSBTAP00000002366/1-1453 KDITKEEYKE IVRKAVDKVC HSKSGEVNST KVANLVKAYV DKYKYSRKGS ENSTTRP00000004412/1-1446 KDITKEEYKE IVRKAVDKVC HSKSGEVNST XXXXXXXXXX XXXXXXXXXX bmy_09835T0/1-1257 KDITKEEYKE IVRKAVDKVC HSKSGEVNST KVANLVKAYV DKYKYSRKGS BACU007951/1-1420 KDITKEEYKE IVRKAVDKVC HSKSGEVNST KVANLVKAYV DKYKYSRKGS 1451 1500 ENSP00000358374/1-1463 QKKTLEEPVS TEKNIG ENSBTAP00000002366/1-1453 QKKTLEEPMS ADKNMC ENSTTRP00000004412/1-1446 XXXXXXXXXX XXXXXX bmy_09835T0/1-1257 QKKTLEEPVS TDKNIG BACU007951/1-1420 QKKTLEEPVS TDKNIG