KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:17:28 2014 Check: 00 .. Name: ENSP00000056217/1-1597 Len: 1630 Check: 6094 Weight: 1.00 Name: ENSBTAP00000002373/1-1584 Len: 1630 Check: 7456 Weight: 1.00 Name: bmy_19833T0/1-1549 Len: 1630 Check: 1561 Weight: 1.00 Name: BACU010928/1-1548 Len: 1630 Check: 4417 Weight: 1.00 // 1 50 ENSP00000056217/1-1597 MEAEEAQRGA SPPISAIEEF SIIPEAPMRS SQVSALGLEA QEDEDPSYKW ENSBTAP00000002373/1-1584 MEAEEPQHGA STPIPARAEF PVIWAPPMRS SKTPALEPAA EEGEDPRCQW bmy_19833T0/1-1549 MEAEEPQHGA STPIRARVEF SVILATPMRS RQTPALEPEA EEGEDPSYQW BACU010928/1-1548 MEAEEPQHGA STPVPARVEF SVILAAPMRS RQTPALEPEA EEGEDPSYQW 51 100 ENSP00000056217/1-1597 REEHRLSATQ QSELRDVCDY AIETMPSFPK EGSADVEPNQ ESLVAEAC-D ENSBTAP00000002373/1-1584 AEGCTLLETQ QRHVRDANDR AAERMTSLLN EASPEVETDQ ETLMAEACDD bmy_19833T0/1-1549 AERHTLLETQ QRHVRDVNDC ATESVTSFPI EASADVETNQ ENLMAEAC-D BACU010928/1-1548 AGRHTLLDTQ QRHVRGVNDC ATESMTSFPI AASADVETNQ ENLMAEAC-H 101 150 ENSP00000056217/1-1597 TPEHWEAVPQ SLAGRQARTL APPELWACPI QSEHLDMAPF SSDLGSEEEE ENSBTAP00000002373/1-1584 TPSCQEAGPW SLEDRQARTP ASLDFLTCPD QGDCLDTASV SRDLDT-SVE bmy_19833T0/1-1549 TPEHQEAGPQ CPAGRQARPP APPELWACPN QGEYLDTASV SSELGS-SME BACU010928/1-1548 TPEHQEAGPQ RPADRQARPP APPELWACPN QGEYLDTASV SSELGS-SME 151 200 ENSP00000056217/1-1597 VEFWPGLTSL TLGSGQAEEE EETSSDNSGQ TRYYSPC-EE HPAETNQN-E ENSBTAP00000002373/1-1584 VDFKPELTSL ILETGQAEGK EETSSNAYAR TRHRPSCDDE HPAETSRPLE bmy_19833T0/1-1549 VEFRPELTSL ILETGQAKEE EETSPDTSAQ TRCGPCC-EE RPAETNQP-Q BACU010928/1-1548 VEFRPELSSL ILETGQAEEE EEPSPDTSAQ TRCGPCC-EE RPAETNQP-Q 201 250 ENSP00000056217/1-1597 GSESGTIRQG EELPPEELQE SQGLLHPQEV QVLEEQGQQE AGFRGEGTLR ENSBTAP00000002373/1-1584 DSECGPARQE S-------P- --GLVCLQGT EGLEEGGPQG E---AAG--- bmy_19833T0/1-1549 DSESGPARQG S-------PE REGAVCLQKA EELEGEGQGE ERLQGAGTPR BACU010928/1-1548 DSESGPARQG S-------PE REGAVCLQKA EELEGEGQGG ERLQGAGTPR 251 300 ENSP00000056217/1-1597 EDVCADGLLG E-EQMIEQVN DEKGEQKQKQ EQVQ-DVMLG RQGERMGLT- ENSBTAP00000002373/1-1584 ----SAGLSG APEQMGEQVK GAEEEGRQKQ QQMQNDMVLE DPGEREGWCC bmy_19833T0/1-1549 EDVCSDGLSG EREQMGEQVH GTEEEQRQKQ QQSQDDVMLA EQGESKGRS- BACU010928/1-1548 GDVCSDGLSG ERVQMGEQVC GTEEEQRQKE QQSQDDVMLA EQGESKGRS- 301 350 ENSP00000056217/1-1597 -GEPEGLNDG EWEQEDMERK AQGQGGPEQG EERKRELQVP EENRADSQDE ENSBTAP00000002373/1-1584 GEELGGLSYG EW-----DWR TWSHGDPEQG EQKGRELTGP EENEVGAQDG bmy_19833T0/1-1549 -GELGGLSSG EW-----DWR TQGHGDLERG EQKSGELTGP EESTVEARYE BACU010928/1-1548 -GELGGLSSG EW-----DWR TQGHGDLERG EQKSGELTGP EESRVEARYE 351 400 ENSP00000056217/1-1597 KSQTFLGKSE EVTGKQEDHG IKEKGVPVSG QEAK------ EPESWDGGRL ENSBTAP00000002373/1-1584 ENQSSASKSE KGSGKPEDPG AQWEAKAAEG QEEEVGSLEE EPGGGEGDTP bmy_19833T0/1-1549 ENQSLVGKSV RVTGKQGDQG LQGKVMPVEG QEEKVGSSEE EPGSGHGDTL BACU010928/1-1548 ENQSLVGKSV RVTGKQEDQG LQGKVMPVEG QEEKVGSSEE EPGGGHGDTP 401 450 ENSP00000056217/1-1597 GAVGRARSRE EENEHHGPSM PALIAPEDSP HCDLFPGASY LMTQIPGTQT ENSBTAP00000002373/1-1584 SRGGEESCIE Q-GEREGPTA LALVAPEVSP PRDLSLEASS PLSRIPGTQT bmy_19833T0/1-1549 GGGGGERHTE EGGKHYVPAT LALVAPEVSS PHDLFPDACC PTARIPGTQA BACU010928/1-1548 GGGGGERRTE EGGKHDVPAA LALVAPEVSS PHDLFPDACC PTARIPGTQA 451 500 ENSP00000056217/1-1597 ESRAEELSPA ALSPSLEPIR CSHQPISLLG SFLTEESPDK EIDQNSQQEE ENSBTAP00000002373/1-1584 EPGAEVPSPI APSPAPEPTG CSHQPFSLPG SCPAEESLDP ETAHRHQQEG bmy_19833T0/1-1549 EPRAEEPSPG A--PTLELVG GSQQLISLPH SFPAAESPDQ ETAQYNQQVG BACU010928/1-1548 EPRAEEPSPG A--PTLELVG WSQQLISLPH SFPAAESPDQ ETAQYNQQVG 501 550 ENSP00000056217/1-1597 SRLRKGTVSS QGTEVVFA-S ASVTPPRTPD SAPPSPAEAY PITPASVSAR ENSBTAP00000002373/1-1584 SELGQETAHG VGAEVVSAYS PSATPPRSPE AAAPSPPEGP PGTAATPMAR bmy_19833T0/1-1549 SELGKGTASS RGGEGV---- -SATPPRTAA SASPSPPEVS PGMTASSSAG BACU010928/1-1548 SELGKGTASS RGGEGV---- -SATPPRTAV SASPSPPEVS PGMTAS-SAG 551 600 ENSP00000056217/1-1597 PPVAFPRRET SCAARAPETA SAPLSMDDPS PCGTSEMCPA ALYGFPSTGT ENSBTAP00000002373/1-1584 PLAASPRREP PVLACSPETS RASCPTDSPS PHGAPKTPPA ACYGFPLAGR bmy_19833T0/1-1549 PQVAFPRREP SVAACSPETS RVSRPTDSPS PCGASESAAA ALHGFPSAGQ BACU010928/1-1548 PQVAFPRREP SVAACSPETS RASRPADSPP PCGASESAAA ARHGFPSAGQ 601 650 ENSP00000056217/1-1597 S-PPRPPANS TGTVQHLRSD SFPGSHRTEQ TPDLVGMLLS YSHSELPQRP ENSBTAP00000002373/1-1584 ANPPGSLGSP TGAVQPVRSN SFPGSHGTEP APHLAGISLS SSHSELPQRP bmy_19833T0/1-1549 ASPHGPPGIR TGAAQHLRSN CFPGSHGTEP TPDLEGVSLS FSHSELPQRP BACU010928/1-1548 ASPHGPPGIR TGAAQHLRGN SLPGSHGTEP TPDLEGISLS FSHSELPQRP 651 700 ENSP00000056217/1-1597 PKPAIYSSVT PRRDRRSGRD YSTVSASPTA LSTLKQDSQE SISNLERPSS ENSBTAP00000002373/1-1584 PKPVIYGSVL PRRGRRTVRD CAIIPEASSS PPTPGQDFGE LASNPATAGS bmy_19833T0/1-1549 PKPAIYGSVI PRRARKSGRD CAIIPESSSS LPTPGQDSQE FASNPARPGS BACU010928/1-1548 PKPAIYGSVI PRRGRKSGRD CTIIPESSSS LPTPGQDSQE FASNPARPGS 701 750 ENSP00000056217/1-1597 PPSIQPWVSP HNPAFATESP AYGSSPSFVS MEDVRIHEPL PPPPPQRRDT ENSBTAP00000002373/1-1584 PPDSQPWGPT KHWAFAPGSP ACGSSPAPAA PMDLMIHEPP PLPPLERRHV bmy_19833T0/1-1549 PQSSQPWAST HPSTFAPGSP AHGSSP-PTV SIDMRIREPP PPPPTEKRRI BACU010928/1-1548 PQSSQPWAST HPSAFAPGSP ARGSSP-PTV SVDMRIREPP PPPPPEKRRV 751 800 ENSP00000056217/1-1597 HPSVVETDGH ARVVVPTLKQ HSHPPPLALG SGLHAPHKGP LPQASDPAVA ENSBTAP00000002373/1-1584 QPSTVEPDGH PPAVIPMLKR YSHPPPLTLG PGLHGPPRVP PAHIPDPLVA bmy_19833T0/1-1549 H-STVEGDGH RSAVVPTLRR YSHPPPLALG LGLHGHPKGP LPQVPDPLVA BACU010928/1-1548 H-STAEGDGH RSAVVPTLRR YSHPPPLALG LGLHGHPKGP LPRVPDPLVA 801 850 ENSP00000056217/1-1597 RQHRPLPSTP DSSHHAQA-- TPRWRYNKPL PPTPDLPQPH LPPISAPGSS ENSBTAP00000002373/1-1584 REHRPLPSTP DAPPHTQHSV SSRQRYNKPL PPTPDAPQPH -HPLVLSSIS bmy_19833T0/1-1549 RQHRPLPSTP DTLYHTQTSF SPRQRYNKPL PPTPGLSQPH PSPVSSSRSS BACU010928/1-1548 RQHRPLPSTP DTPYHTQTSF SPRQRYNKPL PPTPGLPQPQ PSPVSSSRSS 851 900 ENSP00000056217/1-1597 RIYRPLPPLP IIDPPTEPPP LPPKSRGRSR STRGGHMNSG GHAKTRPACQ ENSBTAP00000002373/1-1584 RIYKPLPPVP ILDSPTEPPP LPPKSKGKGR SSQGGLVNSG DQGRPRPVCQ bmy_19833T0/1-1549 RIYKPLPPVP IVNPPTEPPP LPPKSRERSI CTQGELGNSG GQARTRPVCQ BACU010928/1-1548 RIYKPLPPVP IVTPPTEPPP LPPKSRERSS CTQGGLGNSG GEARTRPVCQ 901 950 ENSP00000056217/1-1597 DWTVPLPASA GRTSWPPATA RSTESFTSTS RSKSEVSPGM AFSNMTNFLC ENSBTAP00000002373/1-1584 EWTVSTPPSA GRVSWPPATG RSTDPLASVG RCKSDTPPGL AFSNMTALLH bmy_19833T0/1-1549 EWTISTPHSV GHVSWPPATG RSTDSLVPA- RSKSEVPPGM AFSNMTALVS BACU010928/1-1548 EWTISTPHSV GRVSWPPATG RSTDSLVPAS RSKSEVPPGM AFSNMTALVN 951 1000 ENSP00000056217/1-1597 PSSPTTPWTP ELQGPTSKDE AGVSEHPEAP AREPLRRTTP QQGASGPGRS ENSBTAP00000002373/1-1584 PSSPTTPWTP EVQRPTS--E PGLSEESEAP ARGSWRRTAP QEGSNGLRRS bmy_19833T0/1-1549 PSFLTTPWTL EVQGPT---- ---SEESEVP ARRSLRITAP QKGANGLRRS BACU010928/1-1548 PSFLTARWTL EVQGPT---- ---SKESEVS ARRSLRRTAP QKGASGLRRS 1001 1050 ENSP00000056217/1-1597 PVGQARQPEK PSHLHLEKAS SWPHRRDSGR PPGDSSGQAV APSEGANKHK ENSBTAP00000002373/1-1584 EVGPVRQPEK SGHILLEKAS SWPHRRDPRR PVEGGSEVAA VPGEGSSKHK bmy_19833T0/1-1549 DLGQARQPEK PSHPHLEKAS SWPHRRDPGR PAEGSRGEVA VPSEGSSKHK BACU010928/1-1548 DLGRARQPEK PGHPHLEKAS SWPHRRDPGR PAEGSRGQAV VPSEGSSKHK 1051 1100 ENSP00000056217/1-1597 GWSRQGLRRP SILPEGSSDS RGPAVEKHPG PSDTVVFREK KPKEVMGGFS ENSBTAP00000002373/1-1584 DWHRQGLRRP SILPESPVDT RGPAMEGSPG LSDAIVFREK KPKEVMGNFS bmy_19833T0/1-1549 HWHRQGLRRP SILPEGP--S GGPAVEKSPS LSDAIVFREK KPKEVMGGFS BACU010928/1-1548 HWHRQGLRRP SILPEGP--S GGPAVEKSPS LSDAIVFREK KPKEVMGGFS 1101 1150 ENSP00000056217/1-1597 RRCSKLINSS QLLYQEYSDV VLNKEIQSQQ RLESLSETPG PSSPRQPRKA ENSBTAP00000002373/1-1584 RRCSKLINSS QLLYQEYSDV FLNKEIQSQQ RLDSLTESPG PISPRQPRKA bmy_19833T0/1-1549 RRCSKLINSS QLLYQEYSDV FLNKEIQSQQ RLDSLTEAPE PASPRQPRKA BACU010928/1-1548 RRCSKLINSS QLLYQEYSDV FLNKEIQSQQ RLDSLTEAPE PASPRQPRKA 1151 1200 ENSP00000056217/1-1597 LVSSESYLQR LSMASSGSLW QEIPVVRNST VLLSMTHEDQ KLQEVKFELI ENSBTAP00000002373/1-1584 LVSSESYLRR LSMASSGSLW QEIPVVRNST VLLSMTHEDQ KLQEAKFELI bmy_19833T0/1-1549 LVSSESYLQR LSMASSGSLW QEIPVVRNST VLLSMTHDDQ KLQE------ BACU010928/1-1548 LVSSESYLQR LSMASSGSLW QEIPVVRNST VLLSMTHDDQ KLQEAKFELI 1201 1250 ENSP00000056217/1-1597 VSEASYLRSL NIAVDHFQLS TSLRATLSNQ EHQWLFSRLQ DVRDVSA--- ENSBTAP00000002373/1-1584 VSEASYLRSL HIAVDHFQHS EQLRATLSNQ DHQWLFSRLQ DVRDVST--- bmy_19833T0/1-1549 ---------- ---------- --LRATLSNQ DHQWLFSRLQ DVRDVST--- BACU010928/1-1548 VSEASYLRSL HIAVDHFQHS EQLRATLSNQ DHQWLFSRLQ DNPLIAPSMI 1251 1300 ENSP00000056217/1-1597 ---------- ---TFLSDLE ENFENNIFSF QVCDVVLNHA PDFRRVYLPY ENSBTAP00000002373/1-1584 ---------- ---MFLSDLE ENFENNIFTF QVCDVVLNHA PNFRRVYLPY bmy_19833T0/1-1549 ---------- ---MFLSDLE ENFEGNIFTF QVCDVVLSHA ANFRRVYLPY BACU010928/1-1548 PSGYRHRESK ERRMFLSDLE ENFEGNIFTF QVCDVVLSHA ANFRRVYLPY 1301 1350 ENSP00000056217/1-1597 VTNQTYQERT FQSLMNSNSN FREVLEKLES DPVCQRLSLK SFLILPFQRI ENSBTAP00000002373/1-1584 VTNQTYQERT FQSLLNSNSS FREVLEKLES APICQRLSLK SFLILPFQRI bmy_19833T0/1-1549 VTNQTYQERT FQSLLNSNSS FREVLEKLES DPICQRLSLK SFLILPFQRI BACU010928/1-1548 VTNQTYQERT FQSLLNSNSS FREVLEKLES DPICQRLSLK SFLILPFQRI 1351 1400 ENSP00000056217/1-1597 TRLKLLLQNI LKRTQPGSSE EAEATKAHHA LEQLIRDCNN NVQSMRRTEE ENSBTAP00000002373/1-1584 TRLKLLLQNI LKRTQPGSAE EAEATKAHHA LEELIRDCNN NVQRMRRTEE bmy_19833T0/1-1549 TRLKLLLQNI LKRTQPGSAE EAEATKAHHA LEELIRDCNN NVQRMRRTEE BACU010928/1-1548 TRLKLLLQNI LKRTQPGSSE EAEATKAHHA LEELIRDCNN NVQRMRRTEE 1401 1450 ENSP00000056217/1-1597 LIYLSQKIEF ECKIFPLISQ SRWLVKSGEL TALEFSASPG LRRKLNTRPV ENSBTAP00000002373/1-1584 LIYLSQKIEF ECKIFPLISQ SRWLVKSGEL TALELSVSQA LRRKLTTRPV bmy_19833T0/1-1549 LIYLSQKIEF ECRIFPLISQ SRWLVKSGEL TALEFSVSPG LRRKLNARPV BACU010928/1-1548 LIYLSQKIEF ECRIFPLISQ SRWLVKSGEL TALEFSISPG LRRKLNARPV 1451 1500 ENSP00000056217/1-1597 HLHLFNDCLL LSRPREGSRF LVFDHAPFSS IRGEKCEMKL HGPHKNLFRL ENSBTAP00000002373/1-1584 HLHLFNDCLL LSRPREGSRF LVFDHAPFSA VRGEKCEMKL HGAHKNLFRL bmy_19833T0/1-1549 HLHLFNDCLL LSRPREGSRF LVFDHAPFSS VRGEKCEMKL HGPHKNLFRL BACU010928/1-1548 HLHLFNDCLL LSRPREGSRF LVFDHAPFSS VRGEKCEMKL HGPHKNLFRL 1501 1550 ENSP00000056217/1-1597 FLRQNTQGAQ AEFLFRTETQ SEKLRWISAL AMPREELDLL ECYNSPQVQC ENSBTAP00000002373/1-1584 FLRRNAQGSQ AEFLLRTETQ SEKLRWISAL AMPREELDLL ECYDSPQVQC bmy_19833T0/1-1549 FLRDNAQGSQ AEFLFRTETQ SEKLRWISAL AMPREELDLL ECYESPQVQC BACU010928/1-1548 FLRDNAQGSQ AEFLFRTETQ SEKLRWISAL AMPREELDLL ECYESPQVQC 1551 1600 ENSP00000056217/1-1597 LRAYKPREND ELALEKADVV MVTQQSSDGW LEGVRLSDGE RGWFPVQQVE ENSBTAP00000002373/1-1584 LRAYKPREND ELALEKADVV MVTQQSSDGW LEGVRLSDGE QGWFPLQQVE bmy_19833T0/1-1549 LRAYKPREND ELALEKADVV MVTQQSSDGW LEGVRLSDGE QGWFPVQQVE BACU010928/1-1548 LRAYKPREND ELALEKADVV MVTQQSSD-- ---VEPGEGT ---------- 1601 1650 ENSP00000056217/1-1597 FISNPEVRAQ NLKEAHRVKT AKLQLVEQQA ENSBTAP00000002373/1-1584 FISNPEVRAR NLKEAHRVKT AKLQLVEQQT bmy_19833T0/1-1549 FISNPEVRAR NLKEAHRVKT ARLQLVEQET BACU010928/1-1548 ---------- ---------- ----------