KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:32 2014 Check: 00 .. Name: ENSTTRP00000007240/1-346 Len: 545 Check: 9808 Weight: 1.00 Name: ENSP00000162023/1-368 Len: 545 Check: 5300 Weight: 1.00 Name: ENSBTAP00000002377/1-368 Len: 545 Check: 3965 Weight: 1.00 Name: BACU016636/1-511 Len: 545 Check: 246 Weight: 1.00 Name: bmy_02651T0/1-292 Len: 545 Check: 8147 Weight: 1.00 // 1 50 ENSTTRP00000007240/1-346 ---------- ---------- ---------- ---------- ---------- ENSP00000162023/1-368 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002377/1-368 ---------- ---------- ---------- ---------- ---------- BACU016636/1-511 MEEPEMQLKG KKVTDKFTES VYVLANEPSV ALYRLQEHVR RSLPELAQHK bmy_02651T0/1-292 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007240/1-346 ---------- ---------- ---------- ---------- ---------- ENSP00000162023/1-368 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002377/1-368 ---------- ---------- ---------- ---------- ---------- BACU016636/1-511 ADMQRWEEQS QGAIYTVEYA CSAVKNLVDS SVYFRSVEGL LKQAISIRDH bmy_02651T0/1-292 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007240/1-346 ---------- ---------- ---------- ---------- ---------- ENSP00000162023/1-368 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002377/1-368 ---------- ---------- ---------- ---------- ---------- BACU016636/1-511 MNATAQGHRF STHSHLPPAV PVTVTPTSGE GAARSVCCLG WGFAYQGHST bmy_02651T0/1-292 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000007240/1-346 ---------- ---------- --VTFTKRKF GLMKKAYELS VLCDCEIALI ENSP00000162023/1-368 ----MGRKKI QISRILDQRN RQVTFTKRKF GLMKKAYELS VLCDCEIALI ENSBTAP00000002377/1-368 ----MGRKKI QISRILDQRN RQVTFTKRKF GLMKKAYELS VLCDCEIALI BACU016636/1-511 QPGTMGRKKI QISRILDQRN RQVTFTKRKF GLMKKAYELS VLCDCEIALI bmy_02651T0/1-292 ----MGRKKI QISRILDQRN RQVTFTKRKF GLMKKAYELS VLCDCEIALI 201 250 ENSTTRP00000007240/1-346 IFNSANRLFQ YASTDMDRVL LKYTEYSEPH ESRTNTDILE TLKRRGVGLD ENSP00000162023/1-368 IFNSANRLFQ YASTDMDRVL LKYTEYSEPH ESRTNTDILE TLKRRGIGLD ENSBTAP00000002377/1-368 IFNSSNRLFQ YASTDMDRVL LKYTEYSEPH ESRTNTDILE TLKRRGVGLD BACU016636/1-511 IFNSANRLFQ YASTDMDRVL LKYTEYSEPH ESRTNTDILE TLKRRGVGLD bmy_02651T0/1-292 IFNSANRLFQ YASTDMDRVL LKYTEYSEPH ESRTNTDILE TLKRRGVGLD 251 300 ENSTTRP00000007240/1-346 GQELEPEEVI EGPGEKLRRL AGDGGDPALP RPRLYPAAPT MPSPDMAYGA ENSP00000162023/1-368 GPELEPDEGP EEPGEKFRRL AGEGGDPALP RPRLYPAAPA MPSPDVVYGA ENSBTAP00000002377/1-368 GPELEPDEGL EGPGEKLRRL AGDGGDPALP RPRLYPAAPT MPSPDMVYGA BACU016636/1-511 GQELEPEEGI EGPGEKLRRL AGDGGDPALP RPRLYPAAPT MPSPDMAYGA bmy_02651T0/1-292 GQELEPEEGI EGPGEKLRRL AGDGGDPALP RPRLYPAAPT MPSPDMAYGA 301 350 ENSTTRP00000007240/1-346 LPPPGCDPSG LGEALPAQSR PSPFRPGAPK AGPP--GLAH PLFSASHLGS ENSP00000162023/1-368 LPPPGCDPSG LGEALPAQSR PSPFRPAAPK AGPP--GLVH PLFSPSHLTS ENSBTAP00000002377/1-368 LPPPACEPTG LGEALPAQSR PSPFRPAAPK AGPP--GLAH PLFSPSHLAS BACU016636/1-511 LPPPGCDPSG LGEALPAQSR PSPFRPGVPK AGPP--GLAH PLFSASHLGS bmy_02651T0/1-292 LPPPGCDPGG LGEALPAQSR PSPFRPGAPK AGPPEYGLGD P--------- 351 400 ENSTTRP00000007240/1-346 KTPPPLYLAV DGRRPDLPGG LAGARGGLST SRGLYGSLQS PCSTATPGPP ENSP00000162023/1-368 KTPPPLYLPT EGRRSDLPGG LAGPRGGLNT SRSLYSGLQN PCSTATPGPP ENSBTAP00000002377/1-368 KTPPPLYLAA DGRRPDLPGG LAGTRGGLSS SRGLYGGLQS PCSTAAPGPP BACU016636/1-511 KTPPPLYLTV DGRRPDLPGG LAGARGGLST SRGLYGSLQS PCSTATPGPP bmy_02651T0/1-292 ---PP----- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000007240/1-346 LGSFPFLPAG PP---VGAAA WARKALQ-PA VPPRPPHQSA SSPSASRRPL ENSP00000162023/1-368 LGSFPFLPGG PPEYGLGDPP PPPGLLQPPT LAPWQPSRGD GPPAVSSQPS ENSBTAP00000002377/1-368 LGSFPFLPAG PPEYGLGDPP PPPGLLQPPT LAPWQPSRAD GPPATPTQPS BACU016636/1-511 LGSFPFLPAG P--------- --PGLLQPPT LAPWQPSRGD GSPATPAQPS bmy_02651T0/1-292 ---------- P--------- --PGLLQPPT LAPWQPSRGD GPPATPAQPS 451 500 ENSTTRP00000007240/1-346 EAPATFQRPS PTPCSWPGPW QSPYGLGPPC AGCPLPTAGL GSRPGGGTGL ENSP00000162023/1-368 GGRSLGEEGP PTR------- ----GASPPT PPVSIKSERL SPAPGG---- ENSBTAP00000002377/1-368 GGRSLGEDGP PAR------- ----GASSPT PPVSIKSERL SPAPGG---- BACU016636/1-511 GGRSLGEEGP PAR------- ----GASSPT PPVSIKSERL SPAPGG---- bmy_02651T0/1-292 GGRSLGEEGP PAR------- ----GASSPT PPVSIKSERL SPAPGG---- 501 550 ENSTTRP00000007240/1-346 TPGEVRARGV PTSLPVSLEK TQQL------ ---------- ----- ENSP00000162023/1-368 -PGD-----F PKTFPYPLLL ARSLAEPLRP GPALRRLPLA DGWPR ENSBTAP00000002377/1-368 -PGD-----F PKTFPYPLLL ARPLAEPLRP GPPLRRLPTA DGWPR BACU016636/1-511 -PGD-----F PKAFPYPLLL ARPLADPLRP GPPLRRLPTT DGWPR bmy_02651T0/1-292 -PGD-----F PKAFPYPLLL ARPLADPLRP GPPLRRLPTT DGWPR