KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:33 2014 Check: 00 .. Name: ENSP00000360966/1-507 Len: 520 Check: 8331 Weight: 1.00 Name: ENSBTAP00000002385/1-507 Len: 520 Check: 8896 Weight: 1.00 Name: ENSTTRP00000013496/1-507 Len: 520 Check: 9618 Weight: 1.00 Name: bmy_20873T0/1-451 Len: 520 Check: 2861 Weight: 1.00 Name: BACU016159/1-520 Len: 520 Check: 1790 Weight: 1.00 // 1 50 ENSP00000360966/1-507 MQEPLLGAEG PDYDTFPEKP PPSPGDRARV GTLQNKRVFL ATFAAVLGNF ENSBTAP00000002385/1-507 MQEPLLGAEG RDYDTFPEKP PPSPGERTRV GVLQNKRVFL ATFAAVLGNF ENSTTRP00000013496/1-507 MQEPLLGAEG PDYDTFPEKP PPSPRETTRV GALQNKRVFL ATFAAVLGNF bmy_20873T0/1-451 MQEPLLGAEA PDYDTFPEKP PPSPGERTRV GALQNKRVFL ATFAAVLGNF BACU016159/1-520 MQEPLLGAEA PDYDTFPEKP PPSPGERTRV GALQNKRVFL ATFAAVLGNF 51 100 ENSP00000360966/1-507 SFGYALVYTS PVIPALERSL DPDLHLTKSQ ASWFGSVFTL GAAAGGLSAM ENSBTAP00000002385/1-507 SFGYALVYTS PVIPALEHSS DPNLNLTKTQ ASWFGSVFTL GAAAGGLSAM ENSTTRP00000013496/1-507 SFGYALVYTS PVIPALEHSL DPNLSLTKTQ ASWFGSVFTL GAAAGGLSAM bmy_20873T0/1-451 SFGYALVYTS PVIPALEHSL DPNLSLTKTQ ASWFGSVFTL GAAAGGLSAM BACU016159/1-520 SFGYALVYTS PVIPALEHSL DPNLSLTKTQ ASWFGSVFTL GAAAGGLSAM 101 150 ENSP00000360966/1-507 ILNDLLGRKL SIMFSAVPSA AGYALMAGAH GLWMLLLGRT LTGFAGGLTA ENSBTAP00000002385/1-507 VLNDLLGRKL SIMFSAVPSA AGYALMAGAH GLWMLLLGRM LTGFAGGLTA ENSTTRP00000013496/1-507 VLNDLLGRKL SIMFSAVPSA AGYALMAGAH GLWMLLLGRT LTGFAGGLTA bmy_20873T0/1-451 VLNDLLGRKL SIMFSAVPSA AGYALMAGAH GLWMLLLGRT LTGFAGGLTA BACU016159/1-520 VLNDLLGRKL SIMFSAVPSA AGYALMAGAH GLWMLLLGRT LTGFAGGLTA 151 200 ENSP00000360966/1-507 ACIPVYVSEI APPGVRGALG ATPQLMAVFG SLSLYALG-- ---------- ENSBTAP00000002385/1-507 ACIPVYVSEI APPSVRGALG ATPQLMAVFG SLSLYALG-- ---------- ENSTTRP00000013496/1-507 ACIPVYVSEI APAGVRGALG ATPQLMAVFG SLSLYALG-- ---------- bmy_20873T0/1-451 ACIPVYVSEI APAGVRGALG ATPQLMAVFG SLSLYALG-- ---------- BACU016159/1-520 ACIPVYVSEI APAGVRGALG ATPQLMAVFG SLSLYALGKY HPDAHWAPPP 201 250 ENSP00000360966/1-507 -LLLPWRWLA VAGEAPVLIM ILLLSFMPNS PRFLLSRGRD EEALRALAWL ENSBTAP00000002385/1-507 -LLLPWRWLA VAGEGPVLVM VLLLSCMPNS PRFLLSKGRD AEALQALAWL ENSTTRP00000013496/1-507 -LLLPWRWLA VAGEGPVLVM ILLLSFMPNS PRFLLSRGRD SEALQALAWL bmy_20873T0/1-451 ---------- KASAAPSAAA SCL------- ---------- ---------- BACU016159/1-520 CLLLPWRWLA VAGEGPVLVM IVLLSFMPNS PRFLLSRGRD SEALQALAWL 251 300 ENSP00000360966/1-507 RGTDVDVHWE FEQIQDNVRR QSSRVSWAEA RAPHVCRPIT VALLMRLLQQ ENSBTAP00000002385/1-507 RGPDADTRWE FEQIQDTVRR QSSHLSWAEA RDPHMYRPIV IALLMRFLQQ ENSTTRP00000013496/1-507 RGADADIRWE FEQIQDNVRR QSSHLSWAEA RDPHMYRPIV IALLMRFLQQ bmy_20873T0/1-451 ---------- ---------- QSSHLSWAEA RDPHMYRPIV IALLMRFLQQ BACU016159/1-520 RGADADIRWE FEQIQDNVRR QSSHLSWAEA RDPHMYRPIV IALLMRFLQQ 301 350 ENSP00000360966/1-507 LTGITPILVY LQSIFDSTAV LLPPKDDAAI VGAVRLLSVL IAALTMDLAG ENSBTAP00000002385/1-507 LTGITPILVY LQSIFDSTAV LLPPKVDAAI VGAVRLLSVL IAALTMDLAG ENSTTRP00000013496/1-507 LTGITPILVY LQSIFDSTAV LLPPEDDAAI VGAVRLLSVL IAALTMDLAG bmy_20873T0/1-451 LTGITPILVY LQSIFDSTAV LLPPEDDAAI VGAVRLLSVL IAALTMDLAG BACU016159/1-520 LTGITPILVY LQSIFDSTAV LLPPEDDAAI VGAVRLLSVL IAALTMDLAG 351 400 ENSP00000360966/1-507 RKVLLFVSAA IMFAANLTLG LYIHFGPRPL SPNSTAGLES ESWGDLAQPL ENSBTAP00000002385/1-507 RKALLFVSAA GMFAANLTLG LYVHFGPKSL APNSSMGLGR EALAGTEQPL ENSTTRP00000013496/1-507 RKALLFVSAA SMFAANLTLG LYVHFGPKPL APNSTMGLES VPLGGTEQPL bmy_20873T0/1-451 RKALLFVSAA SMFAANLTLG LYVHFGPKPL TRNGTMGLES VPLAGTEQPL BACU016159/1-520 RKALLFVSAA SMFAANLTLG LYVHFGPKPL TPNGTMGLES VPPAGTEQPL 401 450 ENSP00000360966/1-507 AAPAGYLTLV PLLATMLFIM GYAVGWGPIT WLLMSEVLPL RARGVASGLC ENSBTAP00000002385/1-507 ATPTSYLTLV PLLATMLFIM GYAMGWGPIT WLLMSEILPL RARGVASGLC ENSTTRP00000013496/1-507 ATPTSYLTLV PLLATMLFIM GYAMGWGPIT WLLMSEILPL RARGVASGLC bmy_20873T0/1-451 ATPTSYLTLV PLLATMLFIM GYAMGWGPIT WLLMSEILPL RARGVASGLC BACU016159/1-520 ATPTSYLTLV PLLATMLFIM GYAMGWGPIT WLLMSEILPL RARGVASGLC 451 500 ENSP00000360966/1-507 VLASWLTAFV LTKSFLPVVS TFGLQVPFFF FAAICLVSLV FTGCCVPETK ENSBTAP00000002385/1-507 VLVSWLTAFA LTKSFLLVTN AFGLQAPFFF FAAVCLVNLA FTGCCVPETK ENSTTRP00000013496/1-507 VLVSWLTAFA LTKSFLLVVN AFGLQAPFFF FDAVSSVNLA FTGCCVPETT bmy_20873T0/1-451 VLVSWLTAFA LTKSFLLVVN AFGLQVPFFF FAAVCSVNLA FTGCCVPETK BACU016159/1-520 VLVSWLTAFA LTKSFLLVVN AFGLQVPFFF FAAVCSVNLA FTGCCVPETK 501 550 ENSP00000360966/1-507 GRSLEQIESF FRTGRRSFLR ENSBTAP00000002385/1-507 GRSLEQIESF FRTGRRSFLH ENSTTRP00000013496/1-507 GRSLDQIESF FLSGRRSFLR bmy_20873T0/1-451 GRSLEQIEAF FRSGRRSFLR BACU016159/1-520 GRSLEQIEAF FRNGRRSFLR