KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:34 2014 Check: 00 .. Name: ENSP00000356437/1-1247 Len: 1422 Check: 9703 Weight: 1.00 Name: ENSTTRP00000014486/1-1232 Len: 1422 Check: 4278 Weight: 1.00 Name: bmy_02552T0/1-1069 Len: 1422 Check: 7757 Weight: 1.00 Name: BACU017496/1-955 Len: 1422 Check: 6058 Weight: 1.00 Name: ENSBTAP00000002389/1-1116 Len: 1422 Check: 2631 Weight: 1.00 // 1 50 ENSP00000356437/1-1247 MEDAGAAGPG PEPEPEPEPE PEPAPEPEPE PKPGAGTSEA FSRLWTDVMG ENSTTRP00000014486/1-1232 ---------M EDDAGDAGAA HEPYAEPASE PDAGAGLSEA FSRLWTDLMG bmy_02552T0/1-1069 ---------- ---------- ---------- ---------- ---------- BACU017496/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002389/1-1116 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000356437/1-1247 ILDGSLGNID DLAQQYADYY NTCFSDVCER MEELRKRRVS QDLEVEKPDA ENSTTRP00000014486/1-1232 ILDGSLGNID DLAQQYADYY NTCFSDVCER MEELRKRRVS QDLDVEKPEA bmy_02552T0/1-1069 ---------- ---------- ---------- ---------- ---------- BACU017496/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002389/1-1116 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000356437/1-1247 SPTSLQLRSQ IEESLGFCSA VSTPEVERKN PLHKSNSEDS SVGKGDWKKK ENSTTRP00000014486/1-1232 SPTSLQLRSQ IEESLGFSST VSTPEVERKN PLHKSHSEDS SVGKGDWKKK bmy_02552T0/1-1069 ---------- ---------- ---------- ---------- ---------- BACU017496/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002389/1-1116 ---------- ---------- ---------N PLHKSNSEDS SVGKGDWKKK 151 200 ENSP00000356437/1-1247 NKYFWQNFRK NQKGIMRQTS KGEDVGYVAS EITMSDEERI QLMMMVKEKM ENSTTRP00000014486/1-1232 NKYFWQNFRK NQKGIMRQTS KGEDVGYVAS EITMSDEERI QLMMMVKEKM bmy_02552T0/1-1069 ---------- -----MAET- ------WQTV LTNGTEDGSL HLFRFPALLF BACU017496/1-955 ---------- -----MRQTS KGEDVGYVAS EITMSDEERI QLMMMVKEKM ENSBTAP00000002389/1-1116 NKYFWQNFRK NQKGIMRQTS KGEDVGYVAS EITMSDEERI QLMMMVKEKM 201 250 ENSP00000356437/1-1247 ITIEEALARL KEY------E AQHRQSAALD PADWPDGSYP TFDGSSNCNS ENSTTRP00000014486/1-1232 ISIEEALARL KEY------E AQHRQSAALD PADWPDGSYP PFEGSSNCNX bmy_02552T0/1-1069 LIFGEDWNKS TEFGFGEVVD DHVKQRVLMG QTESLAQT-- -------TAS BACU017496/1-955 ITIEEALARL KEY------E AQHRQSAALD PADWPDGSYP PFDGSSNCNS ENSBTAP00000002389/1-1116 ITIEEALARL KEY------E AQHRQSTALD PANWPDGSYP TFEGSSNCNS 251 300 ENSP00000356437/1-1247 REQSDDETEE SVKFKRLHKL VNSTRRVRKK LIRVEEMKKP STEGGEEHVF ENSTTRP00000014486/1-1232 XXXXXXXXXX XXXXXXXXXX XXXXRRVR-- LIRVEE-KKP SPEGGEEQVF bmy_02552T0/1-1069 REQSDDETEE SVKFKRLHKL VNSTRRVRKK LIRVEEMKKP STEGGEEQVL BACU017496/1-955 REQSDDETEE SVKFKRLHKL VNSTRRVRKK LIRVEEMKKP STEGGEEQVL ENSBTAP00000002389/1-1116 REQSEDETEE SVKFKRLHKL VNSTRRVRKK LIRVEEMKKP STEGGEEQVF 301 350 ENSP00000356437/1-1247 ENSPVLDERS ALYSGVHKKP LFFDGSPEKP PEDDSDSLTT SPSSSSLDTW ENSTTRP00000014486/1-1232 ESSPVPDERS ALYSGVHKKP FFFDASPEKP PEDDSDSLTT SPSSSSLDTW bmy_02552T0/1-1069 ENSPVPDERS ALYSGVHKKP FFFDASPEKP PEDDSDSLTT SPSSSSLDTW BACU017496/1-955 ENSPVPDERS ALYSGVHKKP FFFDASPEKP PEDDSDSLTT SPSSSSLDTW ENSBTAP00000002389/1-1116 ENSPVPDERS ALYSGVHKKP FFFDASPEKP PEDDSDSLTT APSSSSLDTW 351 400 ENSP00000356437/1-1247 GAGRKLVKTF SKGESRGLIK PPKKMGTFFS YPEEEKAQKV SRSLTEGEMK ENSTTRP00000014486/1-1232 GAGRKLVKTF SKGESRGLIK PPKKMGTFFS YPEDDKAQKV SRSLTEGEMK bmy_02552T0/1-1069 GAGRKLVKTF SKGESRGLIK PPKKMGTFFS YPEDDKAQKV SRSLTEGEMK BACU017496/1-955 GAGRKLVKTF SKGESRGLIK PPKKMGTFFS YPEDDKAQKV SRSLTEGEMK ENSBTAP00000002389/1-1116 GAGRKLVKTF SKGESRGLIK PPKKMGTFFS YPEDDKAQKV SRSLTEGEMK 401 450 ENSP00000356437/1-1247 KGLGSLSHG- ---------- ---------- ---------- ---------- ENSTTRP00000014486/1-1232 KGLGSLSHG- ---------- ---------- ---------- ---------- bmy_02552T0/1-1069 KGLGSLSHG- ---------- ---------- ---------- ---------- BACU017496/1-955 KGLGSLSHGV STDGVCFCDS HRRRHHLLVS LEAVQSVRKQ IRLKKTDTNY ENSBTAP00000002389/1-1116 KGLGSLSHG- ---------- ---------- ---------- ---------- 451 500 ENSP00000356437/1-1247 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014486/1-1232 ---------- ---------- ---------- ---------- ---------- bmy_02552T0/1-1069 ---------- ---------- ---------- ---------- ---------- BACU017496/1-955 SCSRAFLCQR PSRKGINSTT CDLQLLRQKP KGGGVCGGPG RRVRGRPSVS ENSBTAP00000002389/1-1116 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000356437/1-1247 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014486/1-1232 ---------- ---------- ---------- ---------- ---------- bmy_02552T0/1-1069 ---------- ---------- ---------- ---------- ---------- BACU017496/1-955 EFNVTYVVER SLYSHLNLTQ LVRPASDRTL SKAEKQDLRR CLLEEEEEAK ENSBTAP00000002389/1-1116 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000356437/1-1247 ---------- ---------- --RTCSFGGF DLTNRSLHVG SNNSDPMGKE ENSTTRP00000014486/1-1232 ---------- ---------- --RTCSFGGF DLTNRSLHIG SNNSDPLGKE bmy_02552T0/1-1069 ---------- ---------- --RTCSFGGF DLTNRSLHIG SNNSDPLGKE BACU017496/1-955 RKWAATVDRC TKGVLLRIHQ KSRTCSFGGF DLTNRSLHIG SNNSDPLGKE ENSBTAP00000002389/1-1116 ---------- ---------- --RTCSFGGF DLTNRSLHIG SNNSDPMGKE 601 650 ENSP00000356437/1-1247 GDFVYKEVIK SPTASRISLG KKVKSVKETM RKRMSKKYSS SVSEQDSGLD ENSTTRP00000014486/1-1232 GDFVYKEVIK SPTASRISLG KKVKSVKETM RKRMSKKYSS SVSEQDSGLD bmy_02552T0/1-1069 GDFVYKEVIK SPTASRISLG KKVKSVKETM RKRMSKKYSS SVSEQDSGLD BACU017496/1-955 GDFVYKEVIK SPTASRISLG KKVKSVKETM RKRMSKKYSS SVSEQDSGLD ENSBTAP00000002389/1-1116 GDFVYKEVIK SPTASRISLG KKVKSVKETM RKRMSKKYSS SVSEQDSGLD 651 700 ENSP00000356437/1-1247 GMPGSPPPSQ PDPEHLDKPK LKAGGSVESL RSSLSGQSSM SGQTVSTTDS ENSTTRP00000014486/1-1232 GMPGSPPSSQ PDSEHMDKPK LKAGGSVESL RSSLSGQSSM SGQTVSTTDS bmy_02552T0/1-1069 GMPGSPPSSQ PDSEHMDKPK LKAGGSVESL RSSLSGQSSM SGQTVSTTDS BACU017496/1-955 GMPGSPPSSQ PDSEHVDKPK LKAGGSVESL RSSLSGQSSM SGQTVSTTDS ENSBTAP00000002389/1-1116 GMPGSPPSSQ PDSEHMDKPK LKAGGSVESL RSSLSGQSSM SGQTVSTTDS 701 750 ENSP00000356437/1-1247 STSNRESVKS EDGDDEEPPY RGPFCGRARV HTDFTPSPYD TDSLKLKKGD ENSTTRP00000014486/1-1232 STSNRESVKS EDGDDEEPPY RGPFCGRARV HTDFTPSPYD TDSLKLKKGD bmy_02552T0/1-1069 STSNRESVKS EDGDDEEPPY RGPFCGRARV HTDFTPSPYD TDSLKLKKGD BACU017496/1-955 STSNRESVKS EDGDDEEPPY RGPFCGRARV HTDFTPSPYD TDSLKLKKGD ENSBTAP00000002389/1-1116 STSNRESVKS EDGDDEEPPY RGPFCGRARV HTDFTPSPYD TDSLKLKKGD 751 800 ENSP00000356437/1-1247 IIDIISKPPM GTWMGLLNNK VGTFKFIYVD VLSEDEEKPK RPTRRRRKGR ENSTTRP00000014486/1-1232 IIDIISKPPM GTWMGLLNNK VGTFKFIYVD VLNEEEEKPK RPTRRRRKGR bmy_02552T0/1-1069 IIDIISKPPM GTWMGLLNNK VGTFKFIYVD VLNEEEEKPK RPTRRRRKGR BACU017496/1-955 IIDIISKPPM GTWMGLLNNK VGTFKFIYVD VLNEEEEKPK RPTRRRRKGR ENSBTAP00000002389/1-1116 IIDIISKPPM GTWMGLLNNK VGTFKFIYVD VLNEEEEKPK RATRRRRKGR 801 850 ENSP00000356437/1-1247 PPQPKSVEDL LDRINLKEHM PTFLFNGYED LDTFKLLEEE DLDELNIRDP ENSTTRP00000014486/1-1232 PPQPKSVEDL LDRINLKEHM PTFLFNGYED LDTFKLLEEE DLDELNIRDP bmy_02552T0/1-1069 PPQPKSVEDL LDRINLKEHM PTFLFNGYED LDTFKLLEEE DLDELNIRDP BACU017496/1-955 PPQPKSVEDL LDRINLREHM PTFLFNGYED LDTFKLLEEE DLDELNIRDP ENSBTAP00000002389/1-1116 PPQPKSVEDL LDRINLKEHM PTFLFNGYED LDTFKLLEEE DLDELNIRDP 851 900 ENSP00000356437/1-1247 EHRAVLLTAV ELLQEYDSNS DQSGSQEKLL VDSQGLSGCS PRDSGCYESS ENSTTRP00000014486/1-1232 EHRAVLLTAV ELLQEYDSNS DQSGSQEKLL VDSQGLSGCS PRDSGCYESS bmy_02552T0/1-1069 EHRAVLLTAV ELLQEYDSNS DQSGSQEKLL VDSQGLSGCS PRDSGCYESS BACU017496/1-955 EHRAVLLTAV ELLQEYDSNS DQSGSQEKLL VDSQGLSGCS PRDSGCYESS ENSBTAP00000002389/1-1116 EHRAVLLTAV ELLQEYDSNS DQSGSQEKLL VDSQGLSGCS PRDSGCYESS 901 950 ENSP00000356437/1-1247 ENLENGKTRK ASLLSAKSST EPSLKSFSRN QLGNYPTLPL MKSGDALKQG ENSTTRP00000014486/1-1232 ENLENGKSRK TS-PSARSSA ESSVKSFNRN QLGSYPTLPL TKPVDALKPG bmy_02552T0/1-1069 ENLENGKSRK TS-PSAKSSA ESSLKSFNRN QLGNYPTLPL TKPVDALKPG BACU017496/1-955 ENLENGKSRK TS-PSAKSSA ESSLKSFNRN QLGNYPTLPL TKPVDALKPG ENSBTAP00000002389/1-1116 ENLENGKTRK TG-LSAKSST ESSLKSFNRN QLGNYPTLPL TKSVDALKQG 951 1000 ENSP00000356437/1-1247 QEEGRLGGGL APDTSKSCDP PGVTGLNKNR RSLPVSICRS CETLEGPQTV ENSTTRP00000014486/1-1232 -GEGRLGSGL TPHTSKHCDP PCVTDLNKNR RSLPVSICRS CETLEGPQTV bmy_02552T0/1-1069 -GEGRLGSGL TPHTSKHCDP PCVTDLNKNR RSLPVSICRS CETLEGPQTV BACU017496/1-955 -GEGRLGGGL TPHTSKHCDP PCVTDLNKNR RSLPVSICRS CETLEGPQTM ENSBTAP00000002389/1-1116 -GEGRLGGGL TPLASKSCDP PCVTDLNKNR RSLPVSICRS CETLEGPQTV 1001 1050 ENSP00000356437/1-1247 DTWPRSHSLD DLQVEPGAEQ DVPTEVTEPP PQIVPEVPQK TTASSTKAQP ENSTTRP00000014486/1-1232 ETWPRSHSLD DLQGEP--EK DVPGEVTEPS PQIVPKVPQK TAPSITKVQS bmy_02552T0/1-1069 ETWPRSHSLD DLQGEP--EK GVPGEVTEPS PQIVPEVPQK TAPSITKVQS BACU017496/1-955 ETWPRSHSLD DLQGEP--EK GVPGEVTEPS PQIVPEVPQK TAPSITKVQS ENSBTAP00000002389/1-1116 ETWPRSHSLD NLQGEP--EK DVPGEVTEPS PEIVPEVPQK TAPSVTKVPS 1051 1100 ENSP00000356437/1-1247 LEQDSAVDNA LLLTQSKRFS EPQKLTTKKL EGSIAASGRG LSPPQCLPRN ENSTTRP00000014486/1-1232 PNLDSAVDNA LLLTQSKRFS EPQKTTTKKL DGPMAAFSQG TSPPPCLPKT bmy_02552T0/1-1069 PKLDSAVDNA LLLTQSKRFS EPQKTTTKKL DGPMAAFSHG TSPPPCLPKT BACU017496/1-955 PKLDSAVDNA LLLTQSKRFS EPQKTTTKKL DGPMAAFSHS TSPPPCLPK- ENSBTAP00000002389/1-1116 PKRDSAVDNA LLLTQSKRFS EPQKTTAKKL DGPMGPFSRG ASPPPCLPKT 1101 1150 ENSP00000356437/1-1247 YDAQPPGAKH GLARTPLEGH RKGHEFEGTH HPLGTKEGVD AEQ-----RM ENSTTRP00000014486/1-1232 YDAQPPAVKH GLTRTPLEGH RKGLDFEGTH HPPGTKEGVD AEQRGPEARS bmy_02552T0/1-1069 XDAQPPAVKH GLTRTPLEGH RKGLDFEGTH HPPGTKEGVD AAQRGPEART BACU017496/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002389/1-1116 FDTQPPAIKP SLTRTPLEGH RKGLDFEGTH HPPGTKEGMD AEQRGPEVRT 1151 1200 ENSP00000356437/1-1247 QPKIPSQPPP VPAKKSRERL ANGLHPVPMG PSGALPSPDA PCLPVKRGSP ENSTTRP00000014486/1-1232 QARPPTQPPP VPAKKSRERL ANGLPPVPPG PPSA-PGPDA PSLPLKKGSP bmy_02552T0/1-1069 QAKPPAQPPP VPAKKSRERL ANGLHPVPPG PPGT-PGPDA PSLPLKKGSA BACU017496/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002389/1-1116 QAKPPVQPPP VPAKKSRERL ANGLHPVPPG PPGV-PSPDA PGLPLKKGSP 1201 1250 ENSP00000356437/1-1247 ASPTSPSDCP PAL-APRPLS GQAPGSPPST RPPPWLSELP ENTSLQEHGV ENSTTRP00000014486/1-1232 G---GPSDCP PPP-VARPPP VPEPGSPPSA RPPPWLSELP ESASLQEHGV bmy_02552T0/1-1069 G---GPGDCP PPP-VARPPA GPEPGSPPSA RPPPWLSELP ESASLQEHGV BACU017496/1-955 ---------- ----MAR--- ---------- ----WL---- ---------- ENSBTAP00000002389/1-1116 G---GPSDCP LVVAVARPPP GPEPGSPPST RPPPWLSELP ESASLQEHGV 1251 1300 ENSP00000356437/1-1247 KLGPALTRKV SCARGVDLET LTENKLHAEG IDLTEEPYSD KHGRCGIPEA ENSTTRP00000014486/1-1232 RLGPALARKV SCTRGVDLEM LTEKKLRAEG IDLTEEPYSD KHGRCGIPEA bmy_02552T0/1-1069 RLGPALARKV SCTRGVDLEM LTEKKLRAEG IDLTEEPYSD KHGRCGIPEA BACU017496/1-955 ---------- ---------- ---------- ------PFPT AH-------P ENSBTAP00000002389/1-1116 RLGPALARKV SCARGLDLEM LTENKLRAEG IDLTEEPYSD KHGRCGIPEA 1301 1350 ENSP00000356437/1-1247 LVQRYAEDLD QPERDVAANM DQIRVKQLRK QHRMAIPSGG LTEICRKPVS ENSTTRP00000014486/1-1232 LVQRYAEDLD QPERDVATNM DQIRVKLLRK QHRMAIPSGG LTEICRKPLS bmy_02552T0/1-1069 LVQRYAEDLD QPERDVATNM DQIRVKLLRK QHRMAIPSGG LTEICRKPLS BACU017496/1-955 LLRVYPN--- ---------- ---------- ---------- -------PMT ENSBTAP00000002389/1-1116 LVQRYAEDLD QPERDVATNM DQIRVKLLRK QHRMAIPSGG LTEICRKPLS 1351 1400 ENSP00000356437/1-1247 PGCISSVSDW LISIGLPMYA GTLSTAGFST LSQVPSLSHT CLQEAGITEE ENSTTRP00000014486/1-1232 PGCISSVSDW LVSIGLPMYA SALTEAGFST LGQVPSLSHT CLQEAGITEE bmy_02552T0/1-1069 PGCVSSVSDW LVSIGLPMYA SALTEAGFST LGQVPSLSHT CLQEAGITEE BACU017496/1-955 PNR------- ---------- ---------- ---------- ---------- ENSBTAP00000002389/1-1116 PGYVSSVSDW LVSIGLPMYA SALSEAGFST LGQVPSLSHT CLQEAGITEE 1401 1450 ENSP00000356437/1-1247 RHIRKLLSAA RLFKLPPGPE AM ENSTTRP00000014486/1-1232 RHISKLVSAA RLFKLPPGPE AM bmy_02552T0/1-1069 RHISKLVSAA RLFKLPPGPE AM BACU017496/1-955 ---------- ------PPLN TV ENSBTAP00000002389/1-1116 RHISKLVSAA RLFKLPPGPE AM