KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:37 2014 Check: 00 .. Name: ENSP00000329943/1-754 Len: 798 Check: 9094 Weight: 1.00 Name: ENSTTRP00000000429/1-750 Len: 798 Check: 6584 Weight: 1.00 Name: ENSBTAP00000002402/1-754 Len: 798 Check: 4015 Weight: 1.00 Name: bmy_05267T0/1-542 Len: 798 Check: 3036 Weight: 1.00 Name: BACU018103/1-694 Len: 798 Check: 3165 Weight: 1.00 // 1 50 ENSP00000329943/1-754 MAEQWELDEE GIRRLGALTL EQPELVESLS LQGSYAGKIH SIGDAFRNFK ENSTTRP00000000429/1-750 MAEQWELDEE GIRRLGALTL EQSELVESLS LQGSYAGKIH SIGDAFRNFK ENSBTAP00000002402/1-754 MAEQWELDEE GIRRLGALTL EQPELVESLS LQGSYAGKIH SIGDAFRNFK bmy_05267T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU018103/1-694 MAEQWELDEE GIRRLGALTL EQPELVESLS LQGSYAGKIH SIGDAFRNFK 51 100 ENSP00000329943/1-754 NLRSLDLSRN LITSLKGIQY LCSLQDLNLY YNNIPSLVEV SRLQPLPFLK ENSTTRP00000000429/1-750 SLRSLDLSRN LITSLKGIQY LCSLQDLNLY YNNIPSLVEV SRLQPLTFLK ENSBTAP00000002402/1-754 SLRSLDLSRN LITSLKGIQY LCSLQDLNLY YNNIPSLVEV SRLQPLPFLK bmy_05267T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU018103/1-694 SLRSLDLSRN LITSLKGIQY LCSLQDLNLY YNNIPSLVEV SRLQPLPFLK 101 150 ENSP00000329943/1-754 ELDLRLNPVV RKDTDYRLFA VYTLQTLEKL DDRTVREGER KAAKLHFSQL ENSTTRP00000000429/1-750 ELDLRLNPVV RKDTDYRLFA VYTLQTLEKL DDRAIRESER KAAKLHFSQL ENSBTAP00000002402/1-754 ELDLRLNPVV RKDTDYRLFA VYMLQTLEKL DDRAVRESER KAAKLHFSQL bmy_05267T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU018103/1-694 ELDLRLNPVV RKDTDYRLFA VYTLQTLEKL DDRAVRESER KAAKLHFSQL 151 200 ENSP00000329943/1-754 GNSENFLLEV EKSSREKTMK NCVTGESSAS KVSANVDSRI EMDSNKGLFI ENSTTRP00000000429/1-750 GNNENFLLEV EKSSREKTVK NCVANESTAS KVSTDVDDRI EIGSNKGLFI ENSBTAP00000002402/1-754 GNSENFLLEV EKSSREKTVK NCVTNESTAS KVSTDSDNRI ETDSNKGLFI bmy_05267T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU018103/1-694 GNNENFLLEV EK--REKTVK NCVANESTAS KVSTDVDNRI ---------- 201 250 ENSP00000329943/1-754 PFPNREIKDS L-STSATQGN GTRDQKLDTF PLGTQTQEVA RREMPSDNHQ ENSTTRP00000000429/1-750 PFPNWEIKDS PTSTSVTQDN GIPDQKLDTL PLGTQMQEVA RKEIPSENHQ ENSBTAP00000002402/1-754 PFPNREIKDS LTSTSATQGS VIPDQKLDPF LLGTQMQEVA RREMPSENNQ bmy_05267T0/1-542 ---------- ---------- ---------- -----MQEVA RREMPSENHQ BACU018103/1-694 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000329943/1-754 EDEFRHYSPR QSTVRSPEKM TREGYQVSFL DNKSSGSSPE KELIPKPDTF ENSTTRP00000000429/1-750 EDEFRRYLPH QSTVRTPEKM AREGYRISFL DNKSSGSSPE KDLIPKPDTY ENSBTAP00000002402/1-754 EDEIRRYSPH QMTVRSPEKM AKEGYRISFL DNKSSGSSPE KDLIPKPDTY bmy_05267T0/1-542 EDEFRRYSPH QSTVRTPEKM AREGYRISFL DNKSSGSSPE KDLILKPDTY BACU018103/1-694 ETEFRRYSPH QSTVRTPEKM AREGYRISFL DNKSSGSSPE KDLILKPDTY 301 350 ENSP00000329943/1-754 HLTHDASLSK CLDVGDSSQI HPYQLPSDVG LENYDSCYSQ TLSLHGSLGK ENSTTRP00000000429/1-750 QLTHDASLGK RLDVGDSRQI HPYQLPSDAG LENYDSHYSQ NPSLHGSLGK ENSBTAP00000002402/1-754 QLTHDASLGK RLDVGDSSQI HPYQLPSDVG LENYDSHYSQ NLSLHGSIGK bmy_05267T0/1-542 QLTHDASLGK RLDVGDSRQI HPYQLPSDAG LENYGSHYSQ NPSLHGSLGK BACU018103/1-694 QLTHDASLGK RLDVGDSRQS HPYQLPSDAG LENYDSHYSQ NPSLHGSLGK 351 400 ENSP00000329943/1-754 RPQRSKNYQE YSIKPSNDIK TTASHSCGDL LTSLSNPDSS TGRLLKLSSD ENSTTRP00000000429/1-750 RPQTSRNYRE YSTKPSNNMK ATTSHSCGDL PTSLSNPDSS TGRLLKLSSD ENSBTAP00000002402/1-754 RPQRNKNYRE YSTKPSNNMK ATTSHSCGDL LTSLSNPDSS TGRLLKLSSD bmy_05267T0/1-542 RPQRSRNYRE YSTKPSNNMK ATTSHSCGDL LTSLSNPDSS TGRLLKLSS- BACU018103/1-694 RPQRSRNYRE YSTKPSNNMK ATTSHSCGDL LTSLSNPDSS TGRLLKLSSD 401 450 ENSP00000329943/1-754 LYATTHFNSD PAVLVNVEQQ LSTSLDDLTP AHGSVPNNAV LGNRTTPLRT ENSTTRP00000000429/1-750 LYATTHFNSD PALLVNVEQN LSTSLGDLTP AHGSFPNNTI LRD---SLRT ENSBTAP00000002402/1-754 LYAATHFNSD PALVVNVEQQ LATSLSDLTQ AHGSFPNNSI LGD---SLRT bmy_05267T0/1-542 ---------- -------EQK LSTSLGDLTP AHGSFPNNTI LGD---SLRT BACU018103/1-694 LYATTHFNSD PALLVNVEQK LSTSLGDLTP AHGSFPNNTI LGD---SLRT 451 500 ENSP00000329943/1-754 LLLSPGTSEH RKIFTKRSLS PSKRGFKWKD NILANLNLKH GFQDATGSE- ENSTTRP00000000429/1-750 LLLPT-VSEN RESLTKGSLS PSRRGFKQKE NILDTLNPKH GFRDATGSE- ENSBTAP00000002402/1-754 LLLPTGTSEN RENLTKRSLS PSRRGFRRKE NILATLNTKH GFRDATGSE- bmy_05267T0/1-542 LLLPTGTSEN RESLTKGSLS PLRRGFKRKE NILDTLNPKH GFRDATGSEA BACU018103/1-694 LLLPTGTSEN RESLTKGSLS PLRRGFKRKE NILDTLNPKH GFRDATGSEA 501 550 ENSP00000329943/1-754 ---------- ---------- ---------- ---------- PLSSDLGSLH ENSTTRP00000000429/1-750 ---------- ---------- ---------- ---------- PLSSDLGSLH ENSBTAP00000002402/1-754 ---------- ---------- ---------- ---------- PLSSDLGSLH bmy_05267T0/1-542 SVGLFVLPLM PIFPDKSTGV NVFRAKKIMI EDTVTFEIIL PLSSDLGSLH BACU018103/1-694 S--------- ---------- ---------- ---------- PLSSDLGSLH 551 600 ENSP00000329943/1-754 GLAGNHSPPI SARTPHVATV LRQLLELVDK HWNGSGSLLL NKKFLGPARD ENSTTRP00000000429/1-750 GLPGNHSPPI SARASHVATV LRQLLELVDK HWNGS-SLLL NKKFLGPARD ENSBTAP00000002402/1-754 GLPGNHSPPV SARTSHVATV LRQLLELVDK HWNGSGSLLL NKKFLGPARD bmy_05267T0/1-542 RLPGNHSPPI SARTSHVATV LRQLLELVDK HWNGSGSLLL NKKFLGPARD BACU018103/1-694 GLPGNHSPPI SARTSHVATV LRQLLELVDK HWNGSGSLLL NKKFLGPARD 601 650 ENSP00000329943/1-754 LLLSLVVPAP SQPRCCSHPE DTMKAFCRRE LELKEAAQLV PNDMESLKQK ENSTTRP00000000429/1-750 LLLTLVVPAP SQQWCHSRPE DTSKASHKRE MELKKTGQLV PNDMESLKQK ENSBTAP00000002402/1-754 LLLTLVVPAP SQQWCRSHPE DTSKAFHRRE MELKETGQLV PNDMEGLKQK bmy_05267T0/1-542 LLLTLVVPAP SQQWCRSHPE DTSKAFHKRE MELKETGQLV PNDMESLKQK BACU018103/1-694 LLLTLVVPAP SQQWCRSHPE DTSKAFHKRE MELKETGQLV PNDMESLKQK 651 700 ENSP00000329943/1-754 LVRVLEENLI LSEKIQQLEE GAAISIVSGQ QSHTYDDLLH KNQQLTMQVA ENSTTRP00000000429/1-750 LVRVLEENLI LSEKIQQLEE GATTSIVSGH QSHTYDDLLH KNQQLNMQVA ENSBTAP00000002402/1-754 LVRVLEENLI LSEKVQRLEE GATTSIVSGH PSHTYDDLLR KNQQLNMQVS bmy_05267T0/1-542 LVRVLEENLI LSEKIQQLEE GATTSIVSGH QSHTYDDLLR KNQQLNMQVA BACU018103/1-694 LVRVLEENLI LSEKIQQLEE GATTSIVSGH QSHTYDDLLR KNQQLNMQVA 701 750 ENSP00000329943/1-754 CLNQELAQLK KLEKTVAILH ESQRSLVVTN EYLLQQLNKE PKGYSGKALL ENSTTRP00000000429/1-750 CLNQELAQLK KLEEIVALLH ESQXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000002402/1-754 CLNQELAQLK KLEETVTLLH ESQRSLVVTN EYLLQQLNKE QKGYSGKALL bmy_05267T0/1-542 CLNQELAQLK KLEETVALLH ESQRSLVVTN EYLLQQLTKE QKGYSGKALL BACU018103/1-694 CLNQELAQLK KLEETVALLH ESQRSLVVTN EYLLQQLTKE QKGYSGKALL 751 800 ENSP00000329943/1-754 PPEKGHHLGR SSPFGKSTLS SSSPVAHETG QYLIQSVLDA APEPGL-- ENSTTRP00000000429/1-750 XXXXXXXXXR SSPFGKSTLS SSSPVAHDTG -YLIQSVSDS VPEPSLW- ENSBTAP00000002402/1-754 PPEKSHHLGR SSPFGKSTLS SSSPVAHDMG QYLIQTVSDS VPEPSLWS bmy_05267T0/1-542 PPEKSHHLGR SSPFGKSTLS SSSPVAHDTG QYLIQSVSDS VPEPSLWS BACU018103/1-694 PPEKSHHLGR SSPFGKSTLS SSSPVAHDTG QYLIQSVSDS VPEPSLRS