KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:39 2014 Check: 00 .. Name: ENSTTRP00000007056/1-559 Len: 899 Check: 3180 Weight: 1.00 Name: ENSP00000333122/1-637 Len: 899 Check: 3905 Weight: 1.00 Name: bmy_01820T0/1-820 Len: 899 Check: 2829 Weight: 1.00 Name: BACU017577/1-499 Len: 899 Check: 1050 Weight: 1.00 Name: ENSBTAP00000002429/1-637 Len: 899 Check: 6113 Weight: 1.00 // 1 50 ENSTTRP00000007056/1-559 ---------- ---------- ---------- ---------- ---------- ENSP00000333122/1-637 ---------- ---------- ---------- ---------- ---------- bmy_01820T0/1-820 PAPHPSSSCS SSAPHTQTSS HPLPHSHTQT HARTHAPHTH STLSRALTPL BACU017577/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002429/1-637 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007056/1-559 ---------- ---------- ---------- ---------- ---------- ENSP00000333122/1-637 ---------- ---------- ---------- ---------- ---------- bmy_01820T0/1-820 SPCALAGAAL RGRRTPLPVS LCNADSAGGG CGGGNRSGIL PPGRGPSQDA BACU017577/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002429/1-637 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007056/1-559 ---------- ---------- ---------- ---------- ---------- ENSP00000333122/1-637 ---------- ---------- ---------- ---------- ---------- bmy_01820T0/1-820 RGTPRRRSPM SRDRSIPCQQ LTASGSRWTS TPQPFRDSNC DSRPPRRPQC BACU017577/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002429/1-637 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000007056/1-559 ---------- ---------- ---------- ---------- ---------- ENSP00000333122/1-637 ---------- ---------- ---------- ---------- ---------- bmy_01820T0/1-820 RFRGSFLETR SKDGTATALK DLFNPHRRTP SPGRGDPAWS HCDLCPLSWC BACU017577/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002429/1-637 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000007056/1-559 ---------- ---------- ---------- ---------- ---------- ENSP00000333122/1-637 ---------- ---------- ---------- ---------- ---------- bmy_01820T0/1-820 PQSPLRKSAA RQAPALRLDP QRSRAAPPPL RPAGRPRLLH SQPPLERPPA BACU017577/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002429/1-637 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000007056/1-559 -MYDSIRFGN VDMPCVQAQY SPSPPGSSYA AQTYGSEYTT EIMNPDYSKL ENSP00000333122/1-637 -MHDSIRFGN VDMPCVQAQY SPSPPGSSYA AQTYSSEYTT EIMNPDYTKL bmy_01820T0/1-820 PPFSAQDILQ VDMPCVQAQY SPSPPGSSYA AQTYGSEYTT EIMNPDYSKL BACU017577/1-499 -MYDSIRFGN VGMPCVQAQY SPSPPGSSYA AQTYGSEYTT EIMNPDYSKL ENSBTAP00000002429/1-637 ---------- --MPCVQAQY SPSPPGSSYA AQTYGSDYTT EIMNPDYAKL 301 350 ENSTTRP00000007056/1-559 TMDLGSTEIT ATATTSLPSF STFMEGYSSN YELKPSCLYQ MQPSGPRPLI ENSP00000333122/1-637 TMDLGSTEIT ATATTSLPSI STFVEGYSSN YELKPSCVYQ MQ----RPLI bmy_01820T0/1-820 TMDLGSTEIT ATATTSLPSF STFMEGYSSN YELKPSCLYQ MQPSGTRPLI BACU017577/1-499 TMDLGSTEIT ATATTSLPSF STFMEGYSSN YELKPSCLYQ MQPSGTRPLI ENSBTAP00000002429/1-637 TMDLGSTEIT ATATTSLPSF STFMEGYSSN YELKPSCLYQ MQPSGPRPLI 351 400 ENSTTRP00000007056/1-559 KMEEGRAHGY HHHHHDHHHH HHH----QQQ PSIPPPSGPE DEVLPSTSMY ENSP00000333122/1-637 KVEEGRAPSY HHHHHHHHHH HHHHQQQHQQ PSIPPASSPE DEVLPSTSMY bmy_01820T0/1-820 KMEEGRAHGY HHHHHDHHHH HHH----QQQ PSIPPPSGPE DEVLPSTSMY BACU017577/1-499 KMEEGRTHSY HHHHHDHHHH HHH----QQQ PSIPPPSGPE DEVLPSTSMY ENSBTAP00000002429/1-637 KMEEGRAHGY HHHHHEHHHH HHHQQQQQQQ PSIPPPSGPE DEVLPSTSMY 401 450 ENSTTRP00000007056/1-559 FKQSPPSTPT TPGFPQQAGA MWEDTLSSAQ GCIAPGPLLD QPMKAVPTVA ENSP00000333122/1-637 FKQSPPSTPT TPAFPPQAGA LWDEALPSAP GCIAPGPLLD PPMKAVPTVA bmy_01820T0/1-820 FKQSPPSTPT TPGFPQQAGA MWDDTLSSAQ GCIAPGPLLD QPMKAVPTVA BACU017577/1-499 FKQSPPSTPT TPGFPQQAGA MWDDTLSSAQ GCIAPGPLLD QPMKA----- ENSBTAP00000002429/1-637 FKQSPPSTPT TPGFPSQAGA MWDDAMSSAP GCIAPGTLLD PPMKAVPTVA 451 500 ENSTTRP00000007056/1-559 GARFPLFPFK PSPPHPPAPS PAGGHHLGYD PTAAAALSLP LG---AAAAA ENSP00000333122/1-637 GARFPLFHFK PSPPHPPAPS PAGGHHLGYD PTAAAALSLP LG-------A bmy_01820T0/1-820 GARFPLFPFK PSPPHPPAPS PAGGHHLGYD PTAAAALSLP LG-AAAAAAA BACU017577/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002429/1-637 GARFPLFHFK PSPPHPPAPG PASGHHLGYD PTAAAALSLP LGAAAAAAAA 501 550 ENSTTRP00000007056/1-559 AAAAGSQAAA LEGHPYGLPL AKRAAALAFP PLGLTASPTA SNLLGESPSL ENSP00000333122/1-637 AAAAGSQAAA LESHPYGLPL AKRAAPLAFP PLGLTPSPTA SSLLGESPSL bmy_01820T0/1-820 AAAAGSQAAA LEGHPYGLPL AKRAAALAFP PLGLTASPTA SNLLGESPSL BACU017577/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002429/1-637 AAAAGSQAAA LEGHPYGLPL SKRAPALAFP PLGLTASPTA SSLLGESPSL 551 600 ENSTTRP00000007056/1-559 PSPPNRSSAS GEGTCAVCGD NAACQHYGVR TCEGCKGFFK RTVQKNAKYV ENSP00000333122/1-637 PSPPSRSSSS GEGTCAVCGD NAACQHYGVR TCEGCKGFFK RTVQKNAKYV bmy_01820T0/1-820 PSPPNRSSAS GEGTCAVCGD NAACQHYGVR TCEGCKGFFK RTVQKNAKYV BACU017577/1-499 ---------- ---------- ---------- ---------- RTVQKNAKYV ENSBTAP00000002429/1-637 PSPPSRSSAS GEGTCAVCGD NAACQHYGVR TCEGCKGFFK RTVQKNAKYV 601 650 ENSTTRP00000007056/1-559 CLANKNCPVD KRRRNRCQYC RFQKCLSVGM VKEVVRTDSL KGRRGRLPSK ENSP00000333122/1-637 CLANKNCPVD KRRRNRCQYC RFQKCLSVGM VKEVVRTDSL KGRRGRLPSK bmy_01820T0/1-820 CLANKNCPVD KRRRNRCQYC RFQKCLGVGM VKEVVRTDSL KGRRGRLPSK BACU017577/1-499 CLANKNCPVD KRRRNRCQYC RFQKCLGVGM VKEVVRTDSL KGRRGRLPSK ENSBTAP00000002429/1-637 CLANKNCPVD KRRRNRCQYC RFQKCLSVGM VKEVVRTDSL KGRRGRLPSK 651 700 ENSTTRP00000007056/1-559 PKSPLQQEAS QPSPPSPPIC MMNALVRALT DSTPRDLDYS RYCPTDQAAA ENSP00000333122/1-637 PKSPLQQEPS QPSPPSPPIC MMNALVRALT DSTPRDLDYS RYCPTDQAAA bmy_01820T0/1-820 PKSPLQQEAS QPSPPSPPIC MMNALVRALT DSTPRDLDYS RYCPTDQAAA BACU017577/1-499 PKSPLQQEAS QPSPPSPPIC MMNALVRALT DSTPRDLDYS RYCPTDQAAA ENSBTAP00000002429/1-637 PKSPLQQEAS QPSPPSPPIC MMNALVRALT DSTPRDLDYS RYCPTDQAAA 701 750 ENSTTRP00000007056/1-559 GTDAEHVQQF YNLLTASIDV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000333122/1-637 GTDAEHVQQF YNLLTASIDV SRSWAEKIPG FTDLPKEDQT LLIESAFLEL bmy_01820T0/1-820 GTDAEHVQQF YNLLTASIDV SRSWAEKIPG FTDLPKEDQT LLIESAFLEL BACU017577/1-499 GTDAEHVQQF YNLLTASIDV SRSWAEKIPG FTDLPKEDQT LLIESAFLEL ENSBTAP00000002429/1-637 GTDAEHVQQF YNLLTASIDV SRSWAEKIPG FTDLPKEDQT LLIESAFLEL 751 800 ENSTTRP00000007056/1-559 XXXXXXXXSN TAEDKFVFCN GLVLHRLQCL RGFGEWLDSI KDFSLSLQSL ENSP00000333122/1-637 FVLRLSIRSN TAEDKFVFCN GLVLHRLQCL RGFGEWLDSI KDFSLNLQSL bmy_01820T0/1-820 FVLRLSIRSN TAEDKFVFCN GLVLHRLQCL RGFGEWLDSI KDFSLSLQSL BACU017577/1-499 FVLRLSIRSN TAEDKFVFCN GLVLHRLQCL RGFGEWLDSI KDFSLSLQSL ENSBTAP00000002429/1-637 FVLRLSIRSN TAEDKFVFCN GLVLHRLQCL RGFGEWLDSI KDFSLSLQSL 801 850 ENSTTRP00000007056/1-559 NLDIQALACL SALSMIT--- ---------- ---------- ---------- ENSP00000333122/1-637 NLDIQALACL SALSMITERH GLKEPKRVEE LCNKITSSLK DHQSKGQALE bmy_01820T0/1-820 NLDIQALACL SALSMITGKH ---------- ---------- ---------- BACU017577/1-499 NLDIQALACL SALSMITERH GLKEPKRVEE LCNKITSSLK EHQSKGQALE ENSBTAP00000002429/1-637 NLDIQALACL SALSMVTERH GLKEPKRVEE LCNKITSSLK EHQSKGQALE 851 900 ENSTTRP00000007056/1-559 ---------- ---------- ---------- ---------- --------- ENSP00000333122/1-637 PTESKVLGAL VELRKICTLG LQRIFYLKLE DLVSPPSIID KLFLDTLPF bmy_01820T0/1-820 ---------- ---------- ---------- ----HPAVT- --------- BACU017577/1-499 PTEPKVLRAL VELRKICTLG LQRIFYLKLE DLVSPPSIID KLFLDTLPF ENSBTAP00000002429/1-637 PTEPKVLRAL VELKKICTLG LQRIFYLKLE DLVSPPSIID KLFLDTLPF